prot_A-nodosum_M_contig10.65.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10.65.1
Unique Nameprot_A-nodosum_M_contig10.65.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length732
Homology
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 5.240e-100
Identity = 324/744 (43.55%), Postives = 371/744 (49.87%), Query Frame = 0
Query:   13 SAFHGAGPYDDALNFRSFELALNDVPDITASCEELVSAEERVPEHSKPT-YSSPMAPLVPSGRSGITDETAAXXXXXXAARLE---------------------------RRLTPPQNSSSSDRLLRPSKPEP--QSW---HPLPPARDDASSLLSCSLSRADRGLDSRLRASSWHAADMRSRKSPSLSNGSSYHQQGTCFSLRSPKREAEPSKEEDKPSNEILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKD---GGDRPRRXXXXXXXXXXXXXXSPPRNXXXXXXXXXXXXXXXXXXXXXXXXX-------CGGGCSRGFSPLRNRSQSH-VHPAGSGAGGMPFAYCGGGHGGDHLNQAMVCVVVPAQRAAALGLSHLPQHAM---GSCASRGTPPRDIHFPTLTQSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYLHHAPQGADQHEHHAIGSIGSHHHVGAKTS--------------------------------HSYGVPAPMHMPPLYHERRELSEPRGYQMPLNSGNGGTAGTGAAGIGVGSGGGRSMVDYKRSK-----FDLPP--PSTSYPPPGWSGDGTGMRGMSHDTI---RSQSPPIGMRTAHGTRNGGGAPRPTPPQPRGYDKQSQNYQSSRYGAVSG 667
            SAFH      D+LNF +FE AL D+   T+   +       + E SKP  + S  A   P      T E AA                                      +         S+ RL R + PEP  Q W      P A DD  +  + +      G DSRLR+ SWHA+D  SR+SP    G  Y           PKR         +   E+LDGSDVLQQISNVTSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFG+IESVSINRDDRT RGRGFAFVKFFQE+AALNAVVADASTHVIRGTTVSVQWSRGAKD   GGDRPRRXXXXXXXXXXXXXX P                    XXXXXXXX       CG GCS GFSP+R+R   H +H   +G GG+P+ + GG HG +H NQ MVCVVVPAQRAAALG +  P H     G C SRGT P D HF +L QS +A XXXXXX                  XXXXXXXXXXX                   + G+ HH+    S                                 SYG P  MHMPP+  ER+  +EPR Y                AG    SG   S  +Y+RS         P   P   Y   G SG G  + G     +   RSQSPP  +R+    R GGGAPRP    PR YD    +Y S+RY    G
Sbjct:    8 SAFHDVSVGRDSLNFHTFERALKDMDGDTSDAADPAEERAGLAEPSKPARHGSVFAVATPPA----TPEAAADRLEGEQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKPAVAMYRQMSAHRLFRAAPPEPKRQQWKVCEETPLAGDDTVAASAAASPMC--GEDSRLRSLSWHASDC-SRRSPPPPPGLEYSHSNRKNDRFFPKRIV------GRDDREVLDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQEAAALNAVVADASTHVIRGTTVSVQWSRGAKDAGSGGDRPRRXXXXXXXXXXXXXXXPSNGSGRSCARPGMFPHKGGGXXXXXXXXXXXXAGACGVGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRHG-EHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAPCDGHFSSLAQSNAASXXXXXXHPGYASHTRSNSQPMSHGXXXXXXXXXXXXXXXXXXXHXXFXXXXXGAASGTPHHLLVNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGAPPAMHMPPMPRERQGRAEPRDYP---------------AGASGSSGSSPSFGEYERSSQSESHLHSPHALPEWGYDDAGGSGAGRAVGGSMATALGVTRSQSPPPMVRS----RIGGGAPRPPSASPRAYDG---HYSSTRYNGRGG 715          
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.920e-43
Identity = 128/300 (42.67%), Postives = 152/300 (50.67%), Query Frame = 0
Query:   13 SAFHGAGPYDDALNFRSFELALNDVPDITASCEELVSAEERVPEHSKPTYSSP--MAPLVPSGRSGITDETAAXXXXXXAARLERRLTPPQ----------------------NSSSSDRLLRPSKPEP--QSW---HPLPPARDDASSLLSCSLSRADRGLDSRLRASSWHAADMRSRKSP---SLSNGSSYHQQGTCFSLRSPKREAEPSKEEDKPSNEILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQE 280
            SAFH A    D+LNF +FELAL DV   T+   +       + E SKP       M    P+      D         X                                    +S+ RL R + PEP  Q W      P A D+ +S  + +   +  G DSRLR+SSWHA             L  G + ++    F  R   R+            E+LDGSDVLQQISN+TSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFG+IESVSINRDDRT RGRGFAFVKFFQE
Sbjct:    8 SAFHDASAGRDSLNFHTFELALKDVDGDTSDAADPAEQRAGLAEPSKPARRGSVFMVATPPATPEAAADSLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYRQTSAHRLFRAAPPEPKRQQWKVCEKTPLAGDETASTSAAAAPMS--GEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHNNNKNDRFFPKRIVCRD----------DREVLDGSDVLQQISNLTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE 295          
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.950e-30
Identity = 137/355 (38.59%), Postives = 167/355 (47.04%), Query Frame = 0
Query:  363 CGGGCSRGFSPLRNRSQSH-VHPAGSGAGGMPFAYCGGGHGGDHLNQAMVCVVVPAQRAAALGLSHLPQHAM---GSCASRGTPPRDIHFPTLTQSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--YLHH--APQGADQHEHHAIGSIGSHHHVGAKTS--------------------------------HSYGVPAPMHMPPLYHERRELSEPRGYQMPLNSGNGGTAGTGAAGIGVGSGGGRSMVDYKRSKFDLPPPSTSYPPPGWS-----GDGTGMRG-----MSHDTIRSQSPPIGMRTAHGTRNGGGAPRPTPPQPRGYDKQSQNYQSSRYGAVSG 667
            CG GCS GFSP+R+R   H +H   +G GG+P+ Y GG HG +H NQ MVCVVVPAQRAAALGL+  P H +   G C SRGT P D HF +L QS+  XXXXXXXXXXX                  XXXXXXX   Y HH  +P G   H      + G+ HH+    S                                 SYG P  MHMPP+  ER+  +EPR Y          +  +G            S  +Y+RS        ++Y  P W      G G G  G      +H  +RSQSPP  +R+    RNGGGAPRP    PR YD    +Y S+RY    G
Sbjct:   25 CGVGCSNGFSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRHG-EHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAPCDGHFSSLAQSSXXXXXXXXXXXXXHPGYASHTRSHSQPISHGXXXXXXXXXXYGHHGGSPHGNFDHXX-XXXAAGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSYGGPPAMHMPPMPRERQGRAEPRDYP---------SGASGXXXXXXXXXXSPSFGEYERSSQSESHLHSAYALPEWGYDDAGGSGAGRAGGGAMATAHGVVRSQSPPPMVRS----RNGGGAPRPPSASPRAYDG---HYSSTRYNGRGG 361          
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: A0A7J7L5F8_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L5F8_9MAGN)

HSP 1 Score: 53.9 bits (128), Expect = 3.060e-5
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0
Query:  215 VTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQ 304
            +T T  S   ++F+  L     S + T+EEL   FS FG I+ VS+ RD RT R +GFAFV F  ES A  A+ A  +  +I G  + V+
Sbjct:   13 ITQTHRSFSSQIFISRL-----SFYTTDEELNRLFSPFGQIKQVSLVRDPRTQRPKGFAFVTFAMESEAQKALEA-MNGRIIGGRLIFVE 96          
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: A0A2R6PA78_ACTCC (Heterogeneous nuclear ribonucleoprotein like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6PA78_ACTCC)

HSP 1 Score: 57.8 bits (138), Expect = 4.270e-5
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  187 REAEPSKEEDKPSNEILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKDGGDR 315
            +EA P  EE+   N+   G    QQ S   S+ P + +++FVGGL  +     +T E L  YF +FG I  V I  D   +R RGF F+ F  E AAL+  V  +  + +   +V V+W+   KDG  R
Sbjct:   78 KEATPKAEEN--GNQHCQGCLCYQQKS---SSSPLSNKKIFVGGLPPT-----LTAEALKQYFERFGAITDVVIIHDMENNRSRGFGFITFDSEEAALS--VLQSRYYELNKKSVEVKWAE-PKDGNKR 193          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE5.240e-10043.55RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM19_ECTSI2.920e-4342.67RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
D7FM18_ECTSI1.950e-3038.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7J7L5F8_9MAGN3.060e-540.00RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A2R6PA78_ACTCC4.270e-535.66Heterogeneous nuclear ribonucleoprotein like n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 225..304
e-value: 6.3E-17
score: 72.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 239..288
e-value: 1.6E-12
score: 47.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 224..308
score: 16.670687
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 214..342
e-value: 2.0E-21
score: 78.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 648..663
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 614..628
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..487
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 584..671
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..572
NoneNo IPR availablePANTHERPTHR48033RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 214..490
coord: 192..309
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 218..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:721237..729136 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.65.1mRNA_A-nodosum_M_contig10.65.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10 720632..731898 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10.65.1 ID=prot_A-nodosum_M_contig10.65.1|Name=mRNA_A-nodosum_M_contig10.65.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=732bp
MVTLGSIQPTNFSAFHGAGPYDDALNFRSFELALNDVPDITASCEELVSA
EERVPEHSKPTYSSPMAPLVPSGRSGITDETAAAAATATAARLERRLTPP
QNSSSSDRLLRPSKPEPQSWHPLPPARDDASSLLSCSLSRADRGLDSRLR
ASSWHAADMRSRKSPSLSNGSSYHQQGTCFSLRSPKREAEPSKEEDKPSN
EILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFS
KFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTT
VSVQWSRGAKDGGDRPRRRNSSNSGSGSGNGGSPPRNGRSSSSSKNGMFP
PKGHRGGGGGGSCGGGCSRGFSPLRNRSQSHVHPAGSGAGGMPFAYCGGG
HGGDHLNQAMVCVVVPAQRAAALGLSHLPQHAMGSCASRGTPPRDIHFPT
LTQSTSAGGGHGHGQGRYPSHTRSHSYSISPTSHGHGHSSGGGGYLHHAP
QGADQHEHHAIGSIGSHHHVGAKTSHSYGVPAPMHMPPLYHERRELSEPR
GYQMPLNSGNGGTAGTGAAGIGVGSGGGRSMVDYKRSKFDLPPPSTSYPP
PGWSGDGTGMRGMSHDTIRSQSPPIGMRTAHGTRNGGGAPRPTPPQPRGY
DKQSQNYQSSRYGAVSGPGDGLPPGIPVIGRRHSGSSLLAGSDSMRQDVL
AATNFFYSAGDIGNEHTYDHDFSYGSASRLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf