mRNA_A-nodosum_M_contig10.65.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.65.1
Unique NamemRNA_A-nodosum_M_contig10.65.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 3.060e-94
Identity = 324/744 (43.55%), Postives = 371/744 (49.87%), Query Frame = 3 
Query:  642 SAFHGAGPYDDALNFRSFELALNDVPDITASCEELVSAEERVPEHSKPT-YSSPMAPLVPSGRSGITDETAAXXXXXXAARLE---------------------------RRLTPPQNSSSSDRLLRPSKPEP--QSW---HPLPPARDDASSLLSCSLSRADRGLDSRLRASSWHAADMRSRKSPSLSNGSSYHQQGTCFSLRSPKREAEPSKEEDKPSNEILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKD---GGDRPRRXXXXXXXXXXXXXXSPPRNXXXXXXXXXXXXXXXXXXXXXXXXX-------CGGGCSRGFSPLRNRSQSH-VHPAGSGAGGMPFAYCGGGHGGDHLNQAMVCVVVPAQRAAALGLSHLPQHAM---GSCASRGTPPRDIHFPTLTQSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYLHHAPQGADQHEHHAIGSIGSHHHVGAKTS--------------------------------HSYGVPAPMHMPPLYHERRELSEPRGYQMPLNSGNGGTAGTGAAGIGVGSGGGRSMVDYKRSK-----FDLPP--PSTSYPPPGWSGDGTGMRGMSHDTI---RSQSPPIGMRTAHGTRNGGGAPRPTPPQPRGYDKQSQNYQSSRYGAVSG 2606
            SAFH      D+LNF +FE AL D+   T+   +       + E SKP  + S  A   P      T E AA                                      +         S+ RL R + PEP  Q W      P A DD  +  + +      G DSRLR+ SWHA+D  SR+SP    G  Y           PKR         +   E+LDGSDVLQQISNVTSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFG+IESVSINRDDRT RGRGFAFVKFFQE+AALNAVVADASTHVIRGTTVSVQWSRGAKD   GGDRPRRXXXXXXXXXXXXXX P                    XXXXXXXX       CG GCS GFSP+R+R   H +H   +G GG+P+ + GG HG +H NQ MVCVVVPAQRAAALG +  P H     G C SRGT P D HF +L QS +A XXXXXX                  XXXXXXXXXXX                   + G+ HH+    S                                 SYG P  MHMPP+  ER+  +EPR Y                AG    SG   S  +Y+RS         P   P   Y   G SG G  + G     +   RSQSPP  +R+    R GGGAPRP    PR YD    +Y S+RY    G
Sbjct:    8 SAFHDVSVGRDSLNFHTFERALKDMDGDTSDAADPAEERAGLAEPSKPARHGSVFAVATPPA----TPEAAADRLEGEQHNXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKPAVAMYRQMSAHRLFRAAPPEPKRQQWKVCEETPLAGDDTVAASAAASPMC--GEDSRLRSLSWHASDC-SRRSPPPPPGLEYSHSNRKNDRFFPKRIV------GRDDREVLDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQEAAALNAVVADASTHVIRGTTVSVQWSRGAKDAGSGGDRPRRXXXXXXXXXXXXXXXPSNGSGRSCARPGMFPHKGGGXXXXXXXXXXXXAGACGVGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRHG-EHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAPCDGHFSSLAQSNAASXXXXXXHPGYASHTRSNSQPMSHGXXXXXXXXXXXXXXXXXXXHXXFXXXXXGAASGTPHHLLVNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGAPPAMHMPPMPRERQGRAEPRDYP---------------AGASGSSGSSPSFGEYERSSQSESHLHSPHALPEWGYDDAGGSGAGRAVGGSMATALGVTRSQSPPPMVRS----RIGGGAPRPPSASPRAYDG---HYSSTRYNGRGG 715
[Close]
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.170e-42
Identity = 128/300 (42.67%), Postives = 152/300 (50.67%), Query Frame = 3 
Query:  642 SAFHGAGPYDDALNFRSFELALNDVPDITASCEELVSAEERVPEHSKPTYSSP--MAPLVPSGRSGITDETAAXXXXXXAARLERRLTPPQ----------------------NSSSSDRLLRPSKPEP--QSW---HPLPPARDDASSLLSCSLSRADRGLDSRLRASSWHAADMRSRKSP---SLSNGSSYHQQGTCFSLRSPKREAEPSKEEDKPSNEILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQE 1445
            SAFH A    D+LNF +FELAL DV   T+   +       + E SKP       M    P+      D         X                                    +S+ RL R + PEP  Q W      P A D+ +S  + +   +  G DSRLR+SSWHA             L  G + ++    F  R   R+            E+LDGSDVLQQISN+TSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFG+IESVSINRDDRT RGRGFAFVKFFQE
Sbjct:    8 SAFHDASAGRDSLNFHTFELALKDVDGDTSDAADPAEQRAGLAEPSKPARRGSVFMVATPPATPEAAADSLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMYRQTSAHRLFRAAPPEPKRQQWKVCEKTPLAGDETASTSAAAAPMS--GEDSRLRSSSWHAXXXXXXXXXXXXGLEYGHNNNKNDRFFPKRIVCRD----------DREVLDGSDVLQQISNLTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE 295
[Close]
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 8.320e-30
Identity = 137/355 (38.59%), Postives = 167/355 (47.04%), Query Frame = 3 
Query: 1692 CGGGCSRGFSPLRNRSQSH-VHPAGSGAGGMPFAYCGGGHGGDHLNQAMVCVVVPAQRAAALGLSHLPQHAM---GSCASRGTPPRDIHFPTLTQSTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--YLHH--APQGADQHEHHAIGSIGSHHHVGAKTS--------------------------------HSYGVPAPMHMPPLYHERRELSEPRGYQMPLNSGNGGTAGTGAAGIGVGSGGGRSMVDYKRSKFDLPPPSTSYPPPGWS-----GDGTGMRG-----MSHDTIRSQSPPIGMRTAHGTRNGGGAPRPTPPQPRGYDKQSQNYQSSRYGAVSG 2606
            CG GCS GFSP+R+R   H +H   +G GG+P+ Y GG HG +H NQ MVCVVVPAQRAAALGL+  P H +   G C SRGT P D HF +L QS+  XXXXXXXXXXX                  XXXXXXX   Y HH  +P G   H      + G+ HH+    S                                 SYG P  MHMPP+  ER+  +EPR Y          +  +G            S  +Y+RS        ++Y  P W      G G G  G      +H  +RSQSPP  +R+    RNGGGAPRP    PR YD    +Y S+RY    G
Sbjct:   25 CGVGCSNGFSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRHG-EHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAPCDGHFSSLAQSSXXXXXXXXXXXXXHPGYASHTRSHSQPISHGXXXXXXXXXXYGHHGGSPHGNFDHXX-XXXAAGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSYGGPPAMHMPPMPRERQGRAEPRDYP---------SGASGXXXXXXXXXXSPSFGEYERSSQSESHLHSAYALPEWGYDDAGGSGAGRAGGGAMATAHGVVRSQSPPPMVRS----RNGGGAPRPPSASPRAYDG---HYSSTRYNGRGG 361
[Close]
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Match: A0A7J7L5F8_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L5F8_9MAGN)

HSP 1 Score: 53.9 bits (128), Expect = 8.120e-5
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 3 
Query: 1248 VTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQ 1517
            +T T  S   ++F+  L     S + T+EEL   FS FG I+ VS+ RD RT R +GFAFV F  ES A  A+ A  +  +I G  + V+
Sbjct:   13 ITQTHRSFSSQIFISRL-----SFYTTDEELNRLFSPFGQIKQVSLVRDPRTQRPKGFAFVTFAMESEAQKALEA-MNGRIIGGRLIFVE 96
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE3.060e-9443.55RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM19_ECTSI2.170e-4242.67RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
D7FM18_ECTSI8.320e-3038.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7J7L5F8_9MAGN8.120e-540.00RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:720632..731898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM19
Model size5563
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K00850,ko:K03006,ko:K13024
KEGG ReactionR00435,R00441,R00442,R00443,R00756,R03236,R03237,R03238,R03239,R04779,R05799,R08964
KEGG Pathwayko00010,ko00030,ko00051,ko00052,ko00230,ko00240,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko03020,ko04070,ko04152,ko05016,ko05168,ko05169,ko05230,map00010,map00030,map00051,map00052,map00230,map00240,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map03020,map04070,map04152,map05016,map05168,map05169,map05230
KEGG ModuleM00001,M00180,M00345
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.79e-44
EggNOG OGsKOG4205@1|root,KOG4205@2759|Eukaryota
EC2.7.1.11,2.7.4.24,2.7.7.6
Descriptionpoly(U) RNA binding
Cds size2196
COG categoryS
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.65.1prot_A-nodosum_M_contig10.65.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 721237..729136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866350.1210647-UTR-A-nodosum_M_contig10:720631..7212361680866350.1210647-UTR-A-nodosum_M_contig10:720631..721236Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 720632..721236 +
1680866350.1882913-UTR-A-nodosum_M_contig10:729136..7318981680866350.1882913-UTR-A-nodosum_M_contig10:729136..731898Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 729137..731898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866350.138677-CDS-A-nodosum_M_contig10:721236..7218391680866350.138677-CDS-A-nodosum_M_contig10:721236..721839Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 721237..721839 +
1680866350.1482563-CDS-A-nodosum_M_contig10:722112..7221841680866350.1482563-CDS-A-nodosum_M_contig10:722112..722184Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 722113..722184 +
1680866350.1579874-CDS-A-nodosum_M_contig10:723685..7238501680866350.1579874-CDS-A-nodosum_M_contig10:723685..723850Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 723686..723850 +
1680866350.1693218-CDS-A-nodosum_M_contig10:726996..7273861680866350.1693218-CDS-A-nodosum_M_contig10:726996..727386Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 726997..727386 +
1680866350.1797001-CDS-A-nodosum_M_contig10:728170..7291361680866350.1797001-CDS-A-nodosum_M_contig10:728170..729136Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 728171..729136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.65.1

>prot_A-nodosum_M_contig10.65.1 ID=prot_A-nodosum_M_contig10.65.1|Name=mRNA_A-nodosum_M_contig10.65.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=732bp
MVTLGSIQPTNFSAFHGAGPYDDALNFRSFELALNDVPDITASCEELVSA
EERVPEHSKPTYSSPMAPLVPSGRSGITDETAAAAATATAARLERRLTPP
QNSSSSDRLLRPSKPEPQSWHPLPPARDDASSLLSCSLSRADRGLDSRLR
ASSWHAADMRSRKSPSLSNGSSYHQQGTCFSLRSPKREAEPSKEEDKPSN
EILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFS
KFGIIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTT
VSVQWSRGAKDGGDRPRRRNSSNSGSGSGNGGSPPRNGRSSSSSKNGMFP
PKGHRGGGGGGSCGGGCSRGFSPLRNRSQSHVHPAGSGAGGMPFAYCGGG
HGGDHLNQAMVCVVVPAQRAAALGLSHLPQHAMGSCASRGTPPRDIHFPT
LTQSTSAGGGHGHGQGRYPSHTRSHSYSISPTSHGHGHSSGGGGYLHHAP
QGADQHEHHAIGSIGSHHHVGAKTSHSYGVPAPMHMPPLYHERRELSEPR
GYQMPLNSGNGGTAGTGAAGIGVGSGGGRSMVDYKRSKFDLPPPSTSYPP
PGWSGDGTGMRGMSHDTIRSQSPPIGMRTAHGTRNGGGAPRPTPPQPRGY
DKQSQNYQSSRYGAVSGPGDGLPPGIPVIGRRHSGSSLLAGSDSMRQDVL
AATNFFYSAGDIGNEHTYDHDFSYGSASRLA*
back to top

mRNA from alignment at A-nodosum_M_contig10:720632..731898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.65.1 ID=mRNA_A-nodosum_M_contig10.65.1|Name=mRNA_A-nodosum_M_contig10.65.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11267bp|location=Sequence derived from alignment at A-nodosum_M_contig10:720632..731898+ (Ascophyllum nodosum dioecious)
GTCGCTTGATTTAGATTAGAACCGTATCTCAACCATGCTTGAATTGATGA
TGTCATAAAATGGAGTTTTGCTTTCCCGAATATTCTGATTGGCCCGTCTT
CCGACCAGGTCCGCGTTGGCGGTTGACTCTTGCCTCAGGGAATATAGGGG
GCAAGACCCTTTCGACATAATCAAGTGTCGTAGGCAGCACCCCCGGAGTT
CCTCGTGTTACAAGTCCTTCGCATTACGGGAAACGGCGGCGGATTGTGTC
AGGAACACAACCTCTAGTTCCAGTAGGAGAGACAATTCACCGCGCGTCTG
AGCGCACATCTGTATCTCTGCGCAATTCTCTGCGCAATATTGCGCTTGCA
CTGCGACGTTCTCATTCCCGCGAAGTCGCAGCGTAGGCAAGGACATCGTA
CTGGGCACACCTTGCTTAGATACAGTACATTGGTGCCTTATTGGGAAGGG
ATCATACCCTAATCGACAGACCAGCGCGTTGCTTGAAAGAACTGCGATTT
TGCGGCTGCTTTTGAGTCTCACACTCGAGATCTGCTCCGGACGCCTGAAA
CTTGGGCTGGAACTGCTTACTTGTTCGCACATCTGCGGCCACCCCTTAAA
GCAGCATGGTCACCCTGGGGAGCATCCAGCCTACCAACTTCTCGGCATTC
CATGGAGCTGGACCCTACGACGACGCTCTCAACTTTCGGAGTTTCGAGCT
TGCACTGAACGACGTTCCGGATATTACCGCATCTTGCGAGGAACTCGTCT
CTGCTGAAGAACGAGTGCCGGAGCATTCAAAGCCAACGTACTCCAGCCCT
ATGGCACCCCTCGTGCCGTCCGGCAGGTCCGGAATCACTGACGAGACGGC
TGCAGCGGCGGCGACGGCGACGGCGGCTCGATTAGAGCGCAGACTAACAC
CGCCTCAAAACTCGTCCTCAAGTGATCGACTTCTTCGCCCTTCGAAGCCA
GAGCCGCAATCCTGGCATCCGCTACCGCCAGCTAGAGATGACGCATCATC
TCTTTTGAGCTGCTCTCTTTCGAGGGCAGACCGGGGTTTGGATTCTCGTC
TACGAGCTTCCTCCTGGCACGCGGCGGACATGCGCAGTCGAAAGTCCCCT
TCCCTTTCGAACGGGTCATCCTACCATCAGCAGGGTACCTGCTTCTCCCT
GAGAAGCCCGAAGCGCGAAGCTGAGCCTTCGAAGGAGGAGGACAAACCGT
CCAATGAGGTGAGTAGCTGTGATCAACGCGCAGCGGACGAAACAACGTAC
AGGGGAGCGGCGTTTTATGGTTGTGTTTCGTTGCCTCCCATGCCTAATAC
ACCGTAGTATTCTCAAATGATGCGAAAAGCAAGACATCTACAGCGTACAA
CATCATCATCCGCATGGTGGTGTGGTGTGTCTGAATTGCACTGTCGAAAT
GGCCCTTTGTCTCGGCATAATGCTGGACTTGTAGGCTGCTGACAGTCGGC
GGCTGCCTCTTGATTAATCGTTACCGAACAGATCCTTGACGGCTCCGATG
TGCTCCAGCAAATTTCGAATGTCACGAGCACGGAGCCAAGCAATGAGCGT
GAGGTGAGGCGTTTGTTGGAACTTCCATATGCTCTCCCTGTTGTACAGTG
TCGAGAACGTTCTAGTGTACGGTAGACTCAAAACTTTTGTGTAATTCTGT
ACCCAATTAGTACTACTACTGTGTACCACTGTCCGAAATAGCCAGAATCT
GGCCCTTAAAAGCTCCATAAAAGCCAGCCAGCAGAGTTGGACAGACATTT
GTACTGTACCACAGACATAAAAAAAAAGGCCCGCCGCCTTGAATTTGAGA
TTGTCTTGGAGGGTTTGCACGTATGATCGGTAAAAACAATAACATAACAG
TAAAGAGTGAGGCGATTGTGGTTCAGAATTTGTCGTCGCCACTGGCTGGC
CTACAACCAGGAGAGGAGTGTTCTCTACATATACCGAGCATCTCTAGTCA
AGAGGAAAAATGTCAAAATGTTTAGGTGTGGTCATGTTTGCTGTATCACA
TCACCGTACCACTTGAAATTGGTCTTAGGCGGTCGTCTCGCCACTCGATC
CGCATGTTTGGTGTTGGATGGCAACTCAGAAAAACTGAGATTACAGCAAA
TTTGAGACTACTGCAACAGGTGACGAAGAGTTCTTCCCTAACTACAGGTA
CTCGACTGTAGTATTGACTTCAAAATAGCGGATCGTCTGGAATTGCCTGG
AAGTTGTTTATAAAGAAAAATCAGGGTACACCTAGACCTTCTAGCATCCC
CCGGTTATATACATGAACTAGCCCTGAAAATGGATGGCGCTGAAGCGAGC
GGCTTATACTAGTGGGAACAATAGGGTACGTTGTTCTCCCGACTGGAGTG
TCTACCGATGTATCGAGAGATATTGTATAAAAGGGAGGACGACAACAACC
TTTCAGTTGGTCACCGAAACCATCTGAAGTTGGGAATTGAGCCCGAATCC
TGGCTGCAGTCACACGAACTGGGATTCTAACTCATACAATGCCCAGCACG
TGGAGAGCGACTAATTTGTCGTGGGTACACTAAATTCGACCTCAACATCG
ACGAGGGATAGGGAGGGCCGGACCCTTCTCGCGATAAAAATTTAAGGCAT
GTACCGCAGTGGGAAGGATGTGTGGCCTTTCTACTGTTGTGACCCCGGCT
GGAGCGTCTTTAACAATGTATCGAGAGATACGTTCCTACGCAAACAGCAT
ATGGGATGACAACAACAACAACAGGGGAAAAATGTCCTCACATTCAGCGT
ATTGGTTGCTTACCCCAAAAAAACTATTTGCTTTACAAGGTGGCCAATCC
CGTACTTGATTGAACGTCTTGACGTGAGGAAATTTTCGCGGGTCCATTCT
CTCAAAATAATCGCCCGGCGATCGCTAATGTACCTCTCCAAAGAATCAAA
AGGCGCTGCCCACTTATTCGACTGAGCCCTTTGAGCTGTGGGAAATCCGC
CGTCTATTCCTTATGTAGTAGTGGTGAGTTTACGCATCCCTCCCTCCAGG
CCTCGGCGGACCAAAATTACTCCTCTCCTCTTCTCGAACCTTGAAAAACA
ACAGGTTTTTGTCGGAGGCTTGAGGGAAAGCGAGGACTCTGTGCACATTA
CGGAAGAGGAACTCGCGACCTACTTTTCCAAGTTCGGTATAATCGAGAGT
GTATCGATCAATCGCGATGACCGCACACACCGGGGCCGTGGCTTCGCGTT
CGTCAAGTTTTTCCAAGAGGTACGGATTTTTTGAAGCAATTCGTTCCAAC
AATACGGGGTACTAAATATACGTCTTTTCCCGTATTTTCAATCATGACTC
GTCCTTTTTCGCGCCGACTCCATTGGCACGTTGATCCGTTTTCGTCTCTT
TTTCTTGATTCTGTACAGTATTATAATTAGCTACAGCACATACTTTTGTG
CTATATGTACAGCGCAAACAGTACTCTACCTAGCAACATTCAAACAATTT
TACGCATTTCCTTGTAGAGATAGGACTAGGTTGTTGTTTGTTGTTTAGAG
AAAAATCTGAACTCGTCTAGACCTTCTGAGCATATCCCCCAGGGGAATGG
TTGTTTCTCACATTCAACGTATTGGTTGCCAACCCGAAAAAAACTACTTT
ACACGGTAGCCAATCTCGCTCGTGGTCTGCTGAACAGGGAAAAGAGAACA
AAAGAAAGAAGTCTGTCAGATAGGGTATGCATGGCCAGAACACGCTTTTT
TTTCAGAATTGTCAAAAAGTTTACACCAAAGACTACTGGTAGTAGAGTGA
AAATGATTTAAACATACAGTACCAGTAATGATCTAGAATACCCATTCCAG
AAGGTCTGAACACCGACCTGTATAAGGTGTTTGTGCATGGCCAGAACACG
CGTTTTTTTTTCAGAGTTGTCAAAAAGTTTACACCAAGTACCACTGGTAG
AAGCTAAACAAAGAGTACCAGTAATGATCTAAAATACCCATTCCAGAAGG
TCTGGACACCGACCTGTATAAGGCGTTTGTTCCGCACAGACGTCCTTATC
CCTGCCCTGAGTTTTGCTTTAGCGTAAGGTGCAGACAAGGTCTTGTAGAT
GCGTTTAGATTTTTCTTTAAACGTACTTACCTCTAGAAATCCTCTGTTTC
TACAAAAGTGTCTGCGTTCCATGTCCTCAAAAAAAAAATCATCTCCGTGG
ATGTGGGAGCCGGAGCGATGTGTAGGCTGGTGAAATATCGTTGTCTGTCG
CCACAAAACAAGAGTTTACATTTATTCCCCGAGGTTCAGTCGCCTCACGA
AACCTGCGATGCGATGACGCACGTGGCCTCGCATTCATCTCTCTCCAGTT
TTGACAAAAGTGAACCACTTTTGACATGTTCATACTATACCCAACTACTC
ATTAATTATACTGTGATAATTTCTCTCTTCGAATCGTGTTGATGAGATAA
TTGTATACCAGGTAGTTTTGCGTATTTCAAAGCCTGCGCGATGTCATATT
GCATCCGTTCCTTTCCTTTTCTATGAAATGGTTGACAACAGTATTTATAG
TGTACTACAGTAGGTAGGACAGTACCATGTGTCCCCTGTAATAATACACG
AAATCGGATATTCTCACCCTCAAGAGATGCAGCCAACTAACTGGCTGCCT
TCGCGATTCAGCCTGTCGGTTGAGACGTGGCGGCGGTATGGTTGGCTGAG
GATGATGGTGTTCCCAGGTGCGCGCCTCTTCCCGAGCCCCAATTTGGTGC
CCTTCGGGAGGGTGGCGGCACGCGAGAGGCAGGGAGCACTGTCGCAGAGA
GCCTGATAGTACTCTACTATCGGGTGGGTACGCACCAGATTCGGCGAAGG
CGGAGGGCAGCTCGATCGTTGACGAGCCAgGGGAGGGCTGAACCCTGTGC
GCGAGAATCACAGGCTTGAACCGGGAGGTTTCTGAGGGAAAAGCTGATCT
CTGACCACGGTCATTTTTCTTCCTACGAGGGCCACAAGGAGCGGCGAACG
GGCAAGATTCGTGGGGTTTTTCAAGAATGCACAGGGCTTTGGACGGCTGG
ATGCTGGCTCGCGCGCCGGCTTCACCAGTTCAAGGCCTCCACCACCATGG
ACCTCGGTATTTCAATTTTCCTTATTTCTGTACAAAATGTGGCCTTGAGA
AACTTGGACTTGTTGATCAAAACTGGTTGGAGCGTAATTTTTCCGGTTTT
TTGCTGAGAACGCTGGTCGTGGGTAGGCGACAACATTCCGAGTCGATTGA
GGTTGCTCTCGATATGGAGTAAGGAGGTTTGATGAACCGTTTTGATATTG
GTCGGTGCCATTGCTTGTAGAGCCGCATAACTTTTTGTCGCGATTTGGAT
CCCTGTTGGTCTGAGTAGCGGGTTGTCACCATGATGTGACCCGTTGACCT
TCGTACCTCTTTGTGACCACAAGCGGGATTGGCATTTGATAGGTCTATGG
CTGACTTGTTGTGTCACCGTAGTTTCTTCAGTTGCAAGGACAATACGCTG
AATGTGTGAATCAACAACAACACTAAACACAATGTCTGTTGTGTACATGT
AACAACAGTAGTGTATGCAGTACTGTACAGTAGTATTTGCGAAGTGATCA
GTTAATGATATTATTGTATGCCAGGTAGTTCAAAGCCTGCTGCGATGTCA
TATTGCACCCGTTCCTTTACCTTTTCTATGAAATGGTCGACTACAGTAGT
GCACAACAGTAGGTAGTACAGTACCATGTGTCCCCAGTTATAGGGCTGCA
CACAATACACAATGCCTGTTGTGTAAATGTAATAAAACAGTAGTGTCTGT
AGTGCTATACAGTATTATAGTAGTATTTGCGAAGTGATAGTGTTTTCATC
ATCGATGAATCGGATAATGAATGAATCCATCGTCATAGTCTTACAGTTCC
GTTGTGATCCATATTTTGTGTTGTCGTTGTGCGACCCTTTGTTGGACTTT
TTGGACAGCGCAGGTACGTTTTGACGGTACAGCATATTAAAATTAATACT
AAATCATTCTTTTCATTATATACAACTAGTACCATACTAGCTCAAGTACT
CTACTACTCTAATGGTAGTATATTAATAGTATCATACGAACACGAAGGAG
ATGAAACGATACCGGTAGTAGGTAATGCAGCGTACCTCGTTAGTGAACCC
AACATTCAAATTTTGTACAGATACGAATACAAGAAGCTCCGCGACCTGGT
TGCGGGCGGCGACGCTCAACGTCCGGCCGACCTGAAAATATCACTACTCC
ACATGACAATGACAACCAGCAACATATATTGAAAATAAACTGTTTTATAA
AAGTATCAGGACACAGTGGATTACACAAGCAGTGTGTCCGATAGGGATGG
TCGTAACCCCTCAAAATCGCTTCTGTTGTTCCCGCCCAAAATGCTGCTCC
TTGCGCCCCCTTCAGTCCGCCGCTCTTAACGCCGTTGTGGCAGATGCTTC
AACGCATGTCATTCGAGGCACTACCGTGAGCGTCCAGTGGTCGAGGGGTG
CTAAGGACGGCGGAGACCGACCACGGCGCCGCAACTCATCCAACTCTGGC
TCGGGTTCCGGCAATGGAGGCTCTCCTCCTCGTAACGGCAGATCTTCATC
TTCATCCAAGAATGGAATGTTTCCGCCCAAGGGACATCGTGGGGGCGGCG
GCGGAGGCTCTTGCGGGGGTGGTTGCAGTCGTGGTTTCAGTCCCCTTCGG
AATCGGAGCCAGAGCCATGTCCACCCGGCCGGATCGGGGGCCGGGGGAAT
GCCTTTTGCGTACTGTGGAGGCGGTCACGGTGGGGATCATCTTAATCAAG
CGATGGTGAGAGAAGGAAAAGTACAGAGTAAACATGATTTTTGTTAATCG
AAATGAAGCTCTACACTTGAAATTGAAGACAGCGGTTATAACCATTACTG
CTGTTGTCGGCGGATACTTTTTGTATATATCGGTTGTCCACCCTTTTCAA
GAGACTGGGCAGCGACCGGGTATGGTTGGTAATCCCTCTTGTATCCAGCC
AAAGAGAGGAAAAAAGTGTCCAAATTTATTTTTTGTATGTCCCCTGTCAC
ATGTATTATTAACATATTTTTATAAATACATGTACAACAGTAGTAGCGCG
TGAAAAGGGCCACGTATATCGTTCTTTTTTAGAAATTCTATCACGAACAC
GTTTTAATATATCAACACAAGGCACAGAAATGCTCAACTCGCACCTTACG
ATAAAAGATCGTAACTTTGAACCTAGGAAAGATGTAGACGAGCCCTTGCG
GGCCTAGGCAGGATCTCGAGAACCTGGGGTTAATATACTTGAAGCAGAAA
GTTTTACAGGTACAACAGTAGTATCAACAAGAAACAAAAACGCGCAATCT
ACTGTACCGTTTGAACGTATCGTTTATATTTCAGATTCGACAAGTCTCCA
AAATTGGAGAAATTGTTTGTTGGTGTTTTTTTCACTGTTGTGTCGCACCT
GTACTGTCTTTTTGTACTCTTGAGGGTCCCGAGTTATTCTTTTGAAACTA
TTTTTTCCAGTTCACACCCTATTTTACTGGAAGAAAAGACACCTTTACTA
AATATTACTACTGTATTATCATATGGTGTGGTGTCGCAGGTATGTGTCGT
CGTGCCTGCACAACGCGCAGCTGCACTCGGACTCTCTCACCTACCGCAGC
ATGCGATGGGCTCATGTGCATCAAGGGGCACCCCCCCCCGTGACATCCAC
TTCCCCACTCTGACGCAGTCTACCTCCGCTGGCGGCGGGCACGGGCACGG
GCAAGGACGTTACCCCTCCCATACTCGATCTCATTCATACTCGATATCCC
CGACCAGCCACGGTCACGGTCACAGCAGCGGTGGAGGCGGCTACCTCCAC
CACGCGCCGCAAGGGGCTGACCAGCATGAGCATCACGCGATTGGTTCGAT
TGGTTCGCACCACCACGTGGGGGCTAAGACGAGTCACTCGTACGGCGTGC
CCGCCCCGATGCACATGCCGCCGTTGTACCACGAGAGAAGGGAACTCTCC
GAGCCAAGGGGTTACCAGATGCCGTTGAACAGCGGTAACGGTGGTACTGC
CGGAACAGGTGCCGCCGGTATTGGAGTTGGCAGCGGTGGGGGTCGCTCTA
TGGTGGACTACAAACGATCGAAGTTCGACCTGCCCCCTCCGTCCACGTCT
TACCCACCTCCAGGGTGGAGTGGCGACGGCACGGGCATGAGAGGAATGAG
TCACGATACGATAAGGTCGCAGTCACCGCCCATAGGGATGCGCACCGCGC
ATGGGACTAGAAACGGGGGCGGGGCGCCTCGCCCTACGCCGCCTCAGCCC
CGAGGGTATGACAAGCAGTCTCAGAATTACCAGTCCTCAAGGTACGGCGC
TGTGAGCGGCCCTGGCGATGGGCTTCCACCGGGTATCCCTGTCATCGGTC
GTCGTCATTCGGGTAGCTCTCTCCTGGCCGGGAGTGACAGCATGAGACAG
GACGTGCTCGCCGCGACGAACTTCTTCTACTCCGCTGGCGACATCGGCAA
CGAGCACACGTACGATCATGACTTCAGCTACGGAAGCGCCTCCCGATTGG
CGTAGAGTGATGAGACTGAGAGGGGGGAAAAAAATAGCGTTGGGGTGGAG
TTTTAAGGACTATTAGTCGACAAAACGGGTTGGTTGGGGAGAGAGAGGTG
ATGAGAAGATAACGGCAGTCCTGTCCCCTTGACGATATCCGGGCGCTCTT
CTAGGCGTAGGATCCTCGGCCGTGGCCCTCCCTCGGCCTCGCCGCCCCTC
ACACACTTGCTCTCCCAGCGTTCATTTCTTCATTTCTGGCGTTTGCCTGA
GGAAAATTTGGCTGTGATCGTTGCGCCTACACTGTAAGAAAGTGGCGGGG
TTGATCTCTTCAGCTCAAAAAGCCTTGTCGACCTGGCTCCGGCATTCACC
CCGTGGAAGGCATGCACGTGATAAGATAATGAAAAATATAACATAGATGG
GCGAACGGCTTTTGGGAGAGGCGTTTAGTTTAGTGTGTCCCTCTCGAGAG
GGAAGGCGGCCAGAATTCATGTTCGATGTTCGTGTACGAAGGTCAAGGAG
GAGTAGCGTTGGTATATTGTATGCCAAGTACAGAGACGCCACTTGCCGTC
CCAAAATATAAGAAGAGAGTCGCGTATTGTATCGATACGATATACACGGG
CGGTGTTGCGCGGTCGAACGGAAGACGCGTCGTTTTGATTGGTCAGCCCC
TCTGCTCTGCTCTGCTCCCTTAATACGGCATGTCAAGAGTTGTCGAGTCT
CTGGCGGTGGTTGTCGGTTGCATAGCACCCTTGAAGGAGTTCGCGCGCCA
TCAGTCAATACCTTTTGAAAACGGATTTCAGTACGCGAAAAATTGAACCG
CGTTCGTTCGGATCTATGTCAACATAAATGCTCGCTCACTGCGCGCTCTT
TGACCGTAACGGGGGGGGGTAAGGTAAGGGAAATGGAGGCGACAGCGGAC
TGGATGGGTGATGGGGGCGGGGGGCTGAGTGGAGGAAGAAGGCTGTCCTT
TACAAGCTTTTCGATCCCCATATACGGTATATTTTTTCTGTTATTTTTTC
TCGAAATTGTTTTTTGTGTGCATGTATTCCACGGTTTCCCCGCTCTCCCT
CTTGCTTTCCATGACAAACACGCCTCCTCGAGGGCGGCGTGGTGAGAGTT
TGTTTCATAGGGCGGGAGGGATACGTGGCAATGGTACAGGAACCGGTCTG
CCGTCAAGCCGCAGCATTGAACGGAGGAGCTGTGCGGGGAGTTGGCGGCT
GGAGTTGATAAGGAGATGCGCTTGAAACCACATGTGCCATGCAGGCGGAG
ACACTACAGTCGTACAAGTATAGGGTATATGTATCTGTGTACCAACCCCT
TCCCCCCCTCCCGAGGCTTGTGGCGCCAGGGTACGGTGATTCTTGACGAA
TGGCCATCGTTGGCAGAAGTGAAGTAATTCTACACTTTTTGGGGGGCATA
ACGTTGGTCACCCATGCGTGTGTTGTGTGTTGTTTTGTCAGTGTGTATGT
TGCGTTCGACCGGGAATAATCCTCCTGCCTCGCGACGCCTTTTATAAGGG
CAAGTCGCCTGTAGAAGAGCAGCAACCCAATCGTCGCAAGAGCAGAGCAA
AAGGTGGTTGCTAGCTGTAGCTGTAGAGAGTTTTCTCTTCTGTTTTTCAC
ATGTGCGGTTCGGGGTGACAAAAATGTTCAGACCAATCATTCATAGGAGT
CACACATGCCCCGACCGCGCCCCACCATGTTGAATGCGTGTACACGTGAC
CCATTAAGTGTCAATTACTGCTGCTGCTGCTGCTGGCGCCGTCTAGGTCG
GCACTTGGTCGGAGGAGCACTCCGTCGATTTTAGGCTTCTCTTGCATGTA
ATGCGCGGATGACAACAAGGAGGCGTTGGTGCAAAATACACACTAGCGAC
CCAACAATCTCGTTCTGTTTCGGTTATCAACGGCCTTACTAGGTGTTGCA
GTCACTCCGTGGGTTGTGTGATAAGCCTATTAATAATGCGGTATGTTGCG
TCGAGGCCAGAGTTAATGGGATGGAAACGGGCGGTTGGCATTCGCAAACC
TAGCAAGAACCTACATAGTTCCATTAATAACCGTGCCCTGGATGAAACAT
ATATATATATATATATATAATTAATATGAACGGCGGGGATAATATGGTTA
TTTTTTTTATGAATGGCAAATCTGTATTTGGCTGGGAGAGACTTTTCTCT
ACATTGCGACGGTTGAGTGGATAGCAAGCGAAGGAGTCAGCATGGGTTAC
CGAGAGCAAATGGGAATGGGGTGGTGGTGTATTTTAGTTGCCGCAGCAAT
AAACGTATTAACGTATTTGGTCGTTTTAGAGGAAGTAAAATATTCCAGTA
ACAGTAGTAAAACCATCTTCGATGGCATGCGGATAGGACAGAGGAAGCTC
AAGTTTGTCTTCCGCGTCGCATGTTGTGGGAGTTGCGAGGGACTTTCGGC
GAACCGAATGAAATCCAAATGCGGAGTTGTCTAAGAACATAATTCGGCAA
AAATAATCCATTTTTTTCCCTTACCAATAACGGAGTAATATATATGTTAT
GCTGAAAATCGGCGCAAGAGGATGGTGTGACCGAAGCATTCATAGTGCGC
TACACTGTGAACACCCAAGTATACCATACTACTAATAGACGTCTCTTGCC
TCGTACCGTACAGTACGGGTGCTGGATGAGACCAACCATTGATCAAAAGT
GGCATTCATTTTGTCGGAGAAAAGAAAGATAAAAATGGCATCGATTCCCA
GATATAGGAACGCCCCGAGCTTGGCTCAGGATGATTCGCGATGATAATTA
TATGTTTTCAGTATTGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10:720632..731898+

>mRNA_A-nodosum_M_contig10.65.1 ID=mRNA_A-nodosum_M_contig10.65.1|Name=mRNA_A-nodosum_M_contig10.65.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2196bp|location=Sequence derived from alignment at A-nodosum_M_contig10:720632..731898+ (Ascophyllum nodosum dioecious)
ATGGTCACCCTGGGGAGCATCCAGCCTACCAACTTCTCGGCATTCCATGG
AGCTGGACCCTACGACGACGCTCTCAACTTTCGGAGTTTCGAGCTTGCAC
TGAACGACGTTCCGGATATTACCGCATCTTGCGAGGAACTCGTCTCTGCT
GAAGAACGAGTGCCGGAGCATTCAAAGCCAACGTACTCCAGCCCTATGGC
ACCCCTCGTGCCGTCCGGCAGGTCCGGAATCACTGACGAGACGGCTGCAG
CGGCGGCGACGGCGACGGCGGCTCGATTAGAGCGCAGACTAACACCGCCT
CAAAACTCGTCCTCAAGTGATCGACTTCTTCGCCCTTCGAAGCCAGAGCC
GCAATCCTGGCATCCGCTACCGCCAGCTAGAGATGACGCATCATCTCTTT
TGAGCTGCTCTCTTTCGAGGGCAGACCGGGGTTTGGATTCTCGTCTACGA
GCTTCCTCCTGGCACGCGGCGGACATGCGCAGTCGAAAGTCCCCTTCCCT
TTCGAACGGGTCATCCTACCATCAGCAGGGTACCTGCTTCTCCCTGAGAA
GCCCGAAGCGCGAAGCTGAGCCTTCGAAGGAGGAGGACAAACCGTCCAAT
GAGATCCTTGACGGCTCCGATGTGCTCCAGCAAATTTCGAATGTCACGAG
CACGGAGCCAAGCAATGAGCGTGAGGTTTTTGTCGGAGGCTTGAGGGAAA
GCGAGGACTCTGTGCACATTACGGAAGAGGAACTCGCGACCTACTTTTCC
AAGTTCGGTATAATCGAGAGTGTATCGATCAATCGCGATGACCGCACACA
CCGGGGCCGTGGCTTCGCGTTCGTCAAGTTTTTCCAAGAGTCCGCCGCTC
TTAACGCCGTTGTGGCAGATGCTTCAACGCATGTCATTCGAGGCACTACC
GTGAGCGTCCAGTGGTCGAGGGGTGCTAAGGACGGCGGAGACCGACCACG
GCGCCGCAACTCATCCAACTCTGGCTCGGGTTCCGGCAATGGAGGCTCTC
CTCCTCGTAACGGCAGATCTTCATCTTCATCCAAGAATGGAATGTTTCCG
CCCAAGGGACATCGTGGGGGCGGCGGCGGAGGCTCTTGCGGGGGTGGTTG
CAGTCGTGGTTTCAGTCCCCTTCGGAATCGGAGCCAGAGCCATGTCCACC
CGGCCGGATCGGGGGCCGGGGGAATGCCTTTTGCGTACTGTGGAGGCGGT
CACGGTGGGGATCATCTTAATCAAGCGATGGTATGTGTCGTCGTGCCTGC
ACAACGCGCAGCTGCACTCGGACTCTCTCACCTACCGCAGCATGCGATGG
GCTCATGTGCATCAAGGGGCACCCCCCCCCGTGACATCCACTTCCCCACT
CTGACGCAGTCTACCTCCGCTGGCGGCGGGCACGGGCACGGGCAAGGACG
TTACCCCTCCCATACTCGATCTCATTCATACTCGATATCCCCGACCAGCC
ACGGTCACGGTCACAGCAGCGGTGGAGGCGGCTACCTCCACCACGCGCCG
CAAGGGGCTGACCAGCATGAGCATCACGCGATTGGTTCGATTGGTTCGCA
CCACCACGTGGGGGCTAAGACGAGTCACTCGTACGGCGTGCCCGCCCCGA
TGCACATGCCGCCGTTGTACCACGAGAGAAGGGAACTCTCCGAGCCAAGG
GGTTACCAGATGCCGTTGAACAGCGGTAACGGTGGTACTGCCGGAACAGG
TGCCGCCGGTATTGGAGTTGGCAGCGGTGGGGGTCGCTCTATGGTGGACT
ACAAACGATCGAAGTTCGACCTGCCCCCTCCGTCCACGTCTTACCCACCT
CCAGGGTGGAGTGGCGACGGCACGGGCATGAGAGGAATGAGTCACGATAC
GATAAGGTCGCAGTCACCGCCCATAGGGATGCGCACCGCGCATGGGACTA
GAAACGGGGGCGGGGCGCCTCGCCCTACGCCGCCTCAGCCCCGAGGGTAT
GACAAGCAGTCTCAGAATTACCAGTCCTCAAGGTACGGCGCTGTGAGCGG
CCCTGGCGATGGGCTTCCACCGGGTATCCCTGTCATCGGTCGTCGTCATT
CGGGTAGCTCTCTCCTGGCCGGGAGTGACAGCATGAGACAGGACGTGCTC
GCCGCGACGAACTTCTTCTACTCCGCTGGCGACATCGGCAACGAGCACAC
GTACGATCATGACTTCAGCTACGGAAGCGCCTCCCGATTGGCGTAG
back to top