prot_A-nodosum_M_contig10.137.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10.137.1
Unique Nameprot_A-nodosum_M_contig10.137.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length145
Homology
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BLAST of mRNA_A-nodosum_M_contig10.137.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.170e-21
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0 
Query:   57 IGYQLDLDRSCMITSSEIDVPIDPATALPLVCQWFCDSCASTETGVVAATA 107
            +GYQLDLDRSC+IT+S++D+PID  T LP+VCQWFCDSC+ST TGVVAATA
Sbjct:    1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATA 51
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.137.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW3_ECTSI4.170e-2176.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 17..96
e-value: 1.7E-4
score: 30.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 4..119
e-value: 9.1E-8
score: 33.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..144
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 18..95
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 15..98
score: 8.9738
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 14..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1315564..1328005 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.137.1mRNA_A-nodosum_M_contig10.137.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10 1313564..1328020 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10.137.1 ID=prot_A-nodosum_M_contig10.137.1|Name=mRNA_A-nodosum_M_contig10.137.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
MQQLEPQRNEPVEISSACIICGERDAVDDTEGVVSLSEESFTLRCNSCRR
WYHPWCIGYQLDLDRSCMITSSEIDVPIDPATALPLVCQWFCDSCASTET
GVVAATAKKSVGVRVKSTGRNSKHGAKKARKKSKDKQPRHQQHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD