mRNA_A-nodosum_M_contig9994.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9994.1.1
Unique NamemRNA_A-nodosum_M_contig9994.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A6H5JCY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.190e-30
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 1
Query:   10 QIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAKH 237
            +IGPHGAGL+HIIFTPDRASLIELQIDQT  RKHF NLAKWSGHGY + GGPNPV V  T  MVREAI  MDL++H
Sbjct:  345 KIGPHGAGLFHIIFTPDRASLIELQIDQTKARKHFNNLAKWSGHGYKASGGPNPVNVADTVGMVREAIGDMDLSRH 420          
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: D8LR02_ECTSI (Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR02_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 3.620e-30
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAKH 237
            + IGPHGAGL+HIIFTPDRASLIELQIDQT  RKHF NLAKWSGHGY + GGPNPV V  T  MVREAI  MDL++H
Sbjct:  538 IMIGPHGAGLFHIIFTPDRASLIELQIDQTKARKHFNNLAKWSGHGYKAAGGPNPVNVADTVGMVREAIGDMDLSRH 614          
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A7S2F8D2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F8D2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.390e-14
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDL 228
            + IGPHGAGL H +F PDRA+LIEL ID ++  +HF NLA WSGH Y      NPV  +   ++ + AI ++DL
Sbjct:  145 LMIGPHGAGLMHNVFMPDRAALIELWIDGSSANRHFHNLAFWSGHAYQGVQMGNPVDTNKLLNLAKSAIEKIDL 218          
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: F0YEW7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW7_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.670e-14
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGP--NPVVVDATTSMVREAITRMDLAK 234
            V +GPHGAGL H IF PDR  L+EL ID ++  +HF NLA W G  YT  GGP  NPV VD   ++V  A+  +DL+K
Sbjct:  605 VMVGPHGAGLLHNIFMPDRGHLVELGIDGSSGLRHFHNLATWQGRAYT--GGPMANPVPVDRLLAVVAAAVAGLDLSK 680          
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A8J2WYB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYB3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.460e-14
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAK 234
            V +GPHGAGL H IF PDRA+L+EL ID ++  +HF NLA+W G  Y      NPV      S+V  A+  +DL+K
Sbjct:  512 VMVGPHGAGLLHNIFMPDRAALVELFIDGSSANRHFHNLARWQGRSYYGSAFSNPVRAQQLVSVVAGAVASLDLSK 587          
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A482SEX5_9ARCH (Glycosyltransferase family 61 protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEX5_9ARCH)

HSP 1 Score: 76.3 bits (186), Expect = 5.410e-13
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAKH 237
            + IGPHGAGL H+ F PDR  LIEL +D +   +HF N+A WSG  Y      NPV +     +VR+AI  +D+  +
Sbjct:  199 ILIGPHGAGLMHVNFLPDRGQLIELFVDGSAGNRHFHNMASWSGKRYRGESMENPVGISWLLGVVRQAIEEVDVNSY 275          
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A7S2MDM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDM3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.350e-12
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAI 213
            V +GPHGAGL H IF PDRA L+EL ID +    HF NLAKW G  Y +    NP+  +  TS+V +AI
Sbjct:  543 VMVGPHGAGLMHNIFMPDRAVLLELHIDGSGANMHFHNLAKWQGRTYMTSTMKNPIPTNQITSLVSQAI 611          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JCY8_9PHAE1.190e-3077.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR02_ECTSI3.620e-3076.62Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus s... [more]
A0A7S2F8D2_9STRA1.390e-1450.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YEW7_AURAN2.670e-1452.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2WYB3_9STRA3.460e-1448.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482SEX5_9ARCH5.410e-1344.16Glycosyltransferase family 61 protein n=1 Tax=arch... [more]
A0A7S2MDM3_9STRA1.350e-1252.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9994contigA-nodosum_M_contig9994:11149..11816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR02
PFAMsDUF563
Model size668
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.8e-33
EggNOG OGsKOG4698@1|root,KOG4698@2759|Eukaryota
EC2.4.1.255
DescriptionEGF domain-specific O-linked N-acetylglucosamine
Cds size240
COG categoryZ
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870545.1609006-CDS-A-nodosum_M_contig9994:11148..113881680870545.1609006-CDS-A-nodosum_M_contig9994:11148..11388Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9994 11149..11388 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870545.1790345-UTR-A-nodosum_M_contig9994:11388..118161680870545.1790345-UTR-A-nodosum_M_contig9994:11388..11816Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9994 11389..11816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9994.1.1prot_A-nodosum_M_contig9994.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9994 11149..11388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9994.1.1

>prot_A-nodosum_M_contig9994.1.1 ID=prot_A-nodosum_M_contig9994.1.1|Name=mRNA_A-nodosum_M_contig9994.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
MHVQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYT
SRGGPNPVVVDATTSMVREAITRMDLAKH*
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mRNA from alignment at A-nodosum_M_contig9994:11149..11816+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9994.1.1 ID=mRNA_A-nodosum_M_contig9994.1.1|Name=mRNA_A-nodosum_M_contig9994.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=668bp|location=Sequence derived from alignment at A-nodosum_M_contig9994:11149..11816+ (Ascophyllum nodosum dioecious)
ATGCATGTACAGATTGGCCCCCACGGAGCAGGCCTCTACCATATCATCTT CACCCCGGACCGAGCGTCGCTCATTGAGCTCCAAATAGACCAGACGACGC AGCGAAAGCACTTCGCCAACCTTGCCAAGTGGTCGGGCCACGGGTACACT TCCAGAGGAGGACCTAACCCGGTTGTCGTCGATGCCACCACGTCCATGGT GAGAGAGGCTATCACCCGGATGGATCTCGCGAAGCACTGATTCTGATTGG TTCGGGTCGATGGTGGTGTACCGCACTAGGCCATGGTGGTGGATGGGGGG GGGTCATCGCCCCGATGGGCCTCGCGAAGCCTTGGTTCTCATTGTTTGAC GTCATCGGTTCTCTGATTGGATGATGCTATTGGTTCGGACTGGGTGATCT CATTGGTTTTTGGTTGGCGAGTGTCGTTGACTCTGACTGGAGGGTGTGCC ATTGATTCTGTTTGGTTGGCGCCATCGATTCTGGTTGGTCGAGTGGCGCG TTCTTTTGTTAGATGCGCAGAGTGACTTATCAATACTGTATCAATAGCTA CACTACACTGGATTAATGTGACTAATGTTGAAAGGGGGTGGTTCGATTCC AGACCGTACGTTGGTGTTTTTTTTGTTTTTTGTTTTTTGGGGTGTCGATT TTGCCACTATCTGGAAAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9994:11149..11816+

>mRNA_A-nodosum_M_contig9994.1.1 ID=mRNA_A-nodosum_M_contig9994.1.1|Name=mRNA_A-nodosum_M_contig9994.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig9994:11149..11816+ (Ascophyllum nodosum dioecious)
ATGCATGTACAGATTGGCCCCCACGGAGCAGGCCTCTACCATATCATCTT
CACCCCGGACCGAGCGTCGCTCATTGAGCTCCAAATAGACCAGACGACGC
AGCGAAAGCACTTCGCCAACCTTGCCAAGTGGTCGGGCCACGGGTACACT
TCCAGAGGAGGACCTAACCCGGTTGTCGTCGATGCCACCACGTCCATGGT
GAGAGAGGCTATCACCCGGATGGATCTCGCGAAGCACTGA
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