mRNA_A-nodosum_M_contig9994.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A6H5JCY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY8_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.190e-30 Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 1 Query: 10 QIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAKH 237 +IGPHGAGL+HIIFTPDRASLIELQIDQT RKHF NLAKWSGHGY + GGPNPV V T MVREAI MDL++H Sbjct: 345 KIGPHGAGLFHIIFTPDRASLIELQIDQTKARKHFNNLAKWSGHGYKASGGPNPVNVADTVGMVREAIGDMDLSRH 420
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: D8LR02_ECTSI (Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR02_ECTSI) HSP 1 Score: 127 bits (318), Expect = 3.620e-30 Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1 Query: 7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAKH 237 + IGPHGAGL+HIIFTPDRASLIELQIDQT RKHF NLAKWSGHGY + GGPNPV V T MVREAI MDL++H Sbjct: 538 IMIGPHGAGLFHIIFTPDRASLIELQIDQTKARKHFNNLAKWSGHGYKAAGGPNPVNVADTVGMVREAIGDMDLSRH 614
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A7S2F8D2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F8D2_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.390e-14 Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 Query: 7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDL 228 + IGPHGAGL H +F PDRA+LIEL ID ++ +HF NLA WSGH Y NPV + ++ + AI ++DL Sbjct: 145 LMIGPHGAGLMHNVFMPDRAALIELWIDGSSANRHFHNLAFWSGHAYQGVQMGNPVDTNKLLNLAKSAIEKIDL 218
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: F0YEW7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW7_AURAN) HSP 1 Score: 81.6 bits (200), Expect = 2.670e-14 Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGP--NPVVVDATTSMVREAITRMDLAK 234 V +GPHGAGL H IF PDR L+EL ID ++ +HF NLA W G YT GGP NPV VD ++V A+ +DL+K Sbjct: 605 VMVGPHGAGLLHNIFMPDRGHLVELGIDGSSGLRHFHNLATWQGRAYT--GGPMANPVPVDRLLAVVAAAVAGLDLSK 680
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A8J2WYB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYB3_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.460e-14 Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAK 234 V +GPHGAGL H IF PDRA+L+EL ID ++ +HF NLA+W G Y NPV S+V A+ +DL+K Sbjct: 512 VMVGPHGAGLLHNIFMPDRAALVELFIDGSSANRHFHNLARWQGRSYYGSAFSNPVRAQQLVSVVAGAVASLDLSK 587
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A482SEX5_9ARCH (Glycosyltransferase family 61 protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEX5_9ARCH) HSP 1 Score: 76.3 bits (186), Expect = 5.410e-13 Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1 Query: 7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAITRMDLAKH 237 + IGPHGAGL H+ F PDR LIEL +D + +HF N+A WSG Y NPV + +VR+AI +D+ + Sbjct: 199 ILIGPHGAGLMHVNFLPDRGQLIELFVDGSAGNRHFHNMASWSGKRYRGESMENPVGISWLLGVVRQAIEEVDVNSY 275
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Match: A0A7S2MDM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDM3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.350e-12 Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1 Query: 7 VQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTSRGGPNPVVVDATTSMVREAI 213 V +GPHGAGL H IF PDRA L+EL ID + HF NLAKW G Y + NP+ + TS+V +AI Sbjct: 543 VMVGPHGAGLMHNIFMPDRAVLLELHIDGSGANMHFHNLAKWQGRTYMTSTMKNPIPTNQITSLVSQAI 611 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9994.1.1 >prot_A-nodosum_M_contig9994.1.1 ID=prot_A-nodosum_M_contig9994.1.1|Name=mRNA_A-nodosum_M_contig9994.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp MHVQIGPHGAGLYHIIFTPDRASLIELQIDQTTQRKHFANLAKWSGHGYTback to top mRNA from alignment at A-nodosum_M_contig9994:11149..11816+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9994.1.1 ID=mRNA_A-nodosum_M_contig9994.1.1|Name=mRNA_A-nodosum_M_contig9994.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=668bp|location=Sequence derived from alignment at A-nodosum_M_contig9994:11149..11816+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9994:11149..11816+ >mRNA_A-nodosum_M_contig9994.1.1 ID=mRNA_A-nodosum_M_contig9994.1.1|Name=mRNA_A-nodosum_M_contig9994.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig9994:11149..11816+ (Ascophyllum nodosum dioecious)back to top |