mRNA_A-nodosum_M_contig999.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig999.5.1
Unique NamemRNA_A-nodosum_M_contig999.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig999.5.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.570e-8
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:   22 RKPGRVPKLVQTWTGPWRVVSGGSEHVRVVEDIVTGETKEVHVVRMLPYADSPLVVGAEVREVFKMTKHQGEFEIADVI--SVGKD 273
            R   RV  L     G + +V+    HV  V++IV+GE ++VHV R+  YAD+ L + AE++EVF+    QGEFE+A ++  SV +D
Sbjct: 1584 RASARVGSLPDFVVGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAED 1669
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig999.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.570e-840.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig999contigA-nodosum_M_contig999:203275..203568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008879046.1
PFAMsChromo
Model size295
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.3e-05
EggNOG OGs2CY6S@1|root,2S2FT@2759|Eukaryota
DescriptionChromatin organization modifier domain
Cds size294
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870545.1289303-CDS-A-nodosum_M_contig999:203274..2035681680870545.1289303-CDS-A-nodosum_M_contig999:203274..203568Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig999 203275..203568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig999.5.1prot_A-nodosum_M_contig999.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig999 203275..203568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig999.5.1

>prot_A-nodosum_M_contig999.5.1 ID=prot_A-nodosum_M_contig999.5.1|Name=mRNA_A-nodosum_M_contig999.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
YVLVARVRKPGRVPKLVQTWTGPWRVVSGGSEHVRVVEDIVTGETKEVHV
VRMLPYADSPLVVGAEVREVFKMTKHQGEFEIADVISVGKDPARVGEY
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mRNA from alignment at A-nodosum_M_contig999:203275..203568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig999.5.1 ID=mRNA_A-nodosum_M_contig999.5.1|Name=mRNA_A-nodosum_M_contig999.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig999:203275..203568+ (Ascophyllum nodosum dioecious)
TATGTTTTGGTAGCACGGGTGAGGAAACCGGGTCGTGTGCCTAAGCTCGT
ACAGACCTGGACTGGACCGTGGCGTGTTGTGTCTGGAGGATCAGAGCATG
TTCGTGTAGTGGAGGATATTGTCACGGGGGAAACCAAAGAAGTGCACGTG
GTGCGAATGCTTCCGTATGCTGATTCGCCTCTGGTCGTGGGGGCAGAGGT
CCGTGAAGTGTTTAAAATGACTAAGCACCAAGGCGAGTTTGAGATCGCTG
ACGTGATCAGTGTCGGCAAGGATCCGGCGCGAGTGGGAGAATAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig999:203275..203568+

>mRNA_A-nodosum_M_contig999.5.1 ID=mRNA_A-nodosum_M_contig999.5.1|Name=mRNA_A-nodosum_M_contig999.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig999:203275..203568+ (Ascophyllum nodosum dioecious)
TATGTTTTGGTAGCACGGGTGAGGAAACCGGGTCGTGTGCCTAAGCTCGT
ACAGACCTGGACTGGACCGTGGCGTGTTGTGTCTGGAGGATCAGAGCATG
TTCGTGTAGTGGAGGATATTGTCACGGGGGAAACCAAAGAAGTGCACGTG
GTGCGAATGCTTCCGTATGCTGATTCGCCTCTGGTCGTGGGGGCAGAGGT
CCGTGAAGTGTTTAAAATGACTAAGCACCAAGGCGAGTTTGAGATCGCTG
ACGTGATCAGTGTCGGCAAGGATCCGGCGCGAGTGGGAGAATAC
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