|
Homology
BLAST of mRNA_A-nodosum_M_contig999.5.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.570e-8 Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 22 RKPGRVPKLVQTWTGPWRVVSGGSEHVRVVEDIVTGETKEVHVVRMLPYADSPLVVGAEVREVFKMTKHQGEFEIADVI--SVGKD 273
R RV L G + +V+ HV V++IV+GE ++VHV R+ YAD+ L + AE++EVF+ QGEFE+A ++ SV +D
Sbjct: 1584 RASARVGSLPDFVVGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAED 1669
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 0 |
Seed ortholog | 157072.XP_008879046.1 |
PFAMs | Chromo |
Model size | 295 |
Max annot lvl | 2759|Eukaryota |
Hectar predicted targeting category | mitochondrion |
Exons | 1 |
Evalue | 3.3e-05 |
EggNOG OGs | 2CY6S@1|root,2S2FT@2759|Eukaryota |
Description | Chromatin organization modifier domain |
Cds size | 294 |
COG category | S |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680870545.1289303-CDS-A-nodosum_M_contig999:203274..203568 | 1680870545.1289303-CDS-A-nodosum_M_contig999:203274..203568 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig999 203275..203568 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig999.5.1 >prot_A-nodosum_M_contig999.5.1 ID=prot_A-nodosum_M_contig999.5.1|Name=mRNA_A-nodosum_M_contig999.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
YVLVARVRKPGRVPKLVQTWTGPWRVVSGGSEHVRVVEDIVTGETKEVHV VRMLPYADSPLVVGAEVREVFKMTKHQGEFEIADVISVGKDPARVGEY back to topmRNA from alignment at A-nodosum_M_contig999:203275..203568+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig999.5.1 ID=mRNA_A-nodosum_M_contig999.5.1|Name=mRNA_A-nodosum_M_contig999.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig999:203275..203568+ (Ascophyllum nodosum dioecious) TATGTTTTGGTAGCACGGGTGAGGAAACCGGGTCGTGTGCCTAAGCTCGT
ACAGACCTGGACTGGACCGTGGCGTGTTGTGTCTGGAGGATCAGAGCATG
TTCGTGTAGTGGAGGATATTGTCACGGGGGAAACCAAAGAAGTGCACGTG
GTGCGAATGCTTCCGTATGCTGATTCGCCTCTGGTCGTGGGGGCAGAGGT
CCGTGAAGTGTTTAAAATGACTAAGCACCAAGGCGAGTTTGAGATCGCTG
ACGTGATCAGTGTCGGCAAGGATCCGGCGCGAGTGGGAGAATAC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig999:203275..203568+ >mRNA_A-nodosum_M_contig999.5.1 ID=mRNA_A-nodosum_M_contig999.5.1|Name=mRNA_A-nodosum_M_contig999.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig999:203275..203568+ (Ascophyllum nodosum dioecious) TATGTTTTGGTAGCACGGGTGAGGAAACCGGGTCGTGTGCCTAAGCTCGT ACAGACCTGGACTGGACCGTGGCGTGTTGTGTCTGGAGGATCAGAGCATG TTCGTGTAGTGGAGGATATTGTCACGGGGGAAACCAAAGAAGTGCACGTG GTGCGAATGCTTCCGTATGCTGATTCGCCTCTGGTCGTGGGGGCAGAGGT CCGTGAAGTGTTTAAAATGACTAAGCACCAAGGCGAGTTTGAGATCGCTG ACGTGATCAGTGTCGGCAAGGATCCGGCGCGAGTGGGAGAATAC back to top
|