mRNA_A-nodosum_M_contig998.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig998.2.1
Unique NamemRNA_A-nodosum_M_contig998.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig998.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig998contigA-nodosum_M_contig998:37147..38711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size822
Hectar predicted targeting categoryother localisation
Exons3
Cds size657
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870544.3330672-CDS-A-nodosum_M_contig998:37146..374611680870544.3330672-CDS-A-nodosum_M_contig998:37146..37461Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 37147..37461 +
1680870544.3485572-CDS-A-nodosum_M_contig998:37838..379561680870544.3485572-CDS-A-nodosum_M_contig998:37838..37956Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 37839..37956 +
1680870544.3605607-CDS-A-nodosum_M_contig998:38324..385481680870544.3605607-CDS-A-nodosum_M_contig998:38324..38548Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 38325..38548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870544.3722887-UTR-A-nodosum_M_contig998:38548..387111680870544.3722887-UTR-A-nodosum_M_contig998:38548..38711Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig998 38549..38711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig998.2.1prot_A-nodosum_M_contig998.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig998 37147..38548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig998.2.1

>prot_A-nodosum_M_contig998.2.1 ID=prot_A-nodosum_M_contig998.2.1|Name=mRNA_A-nodosum_M_contig998.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=219bp
IGTETTTTTDIGTETTTTTNIGTETTTTTDTGTETTSTPETTNSATCNEG
ESLTITSTVFPEVVGCYSGTGTLNENEVVYTETGTTDDGQNGVVARNIGE
DSAPDIRWIVGYSSLDTTSREAEVYCVSTDLAADVHPADVTSWICNLSGD
GSQISDFVLVSDTDFAVTCGCTMGMTSSPSTTPGSEQNANVGHLSTTLST
FVAVGVGFTATVVHLVRL*
back to top

mRNA from alignment at A-nodosum_M_contig998:37147..38711+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig998.2.1 ID=mRNA_A-nodosum_M_contig998.2.1|Name=mRNA_A-nodosum_M_contig998.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1565bp|location=Sequence derived from alignment at A-nodosum_M_contig998:37147..38711+ (Ascophyllum nodosum dioecious)
ATCGGCACCGAGACTACTACTACCACCGACATCGGCACCGAGACCACTAC
CACCACCAACATCGGCACCGAGACCACTACCACTACCGACACCGGCACCG
AGACCACTTCTACTCCCGAGACCACTAATTCTGCTACCTGCAACGAGGGG
GAATCTCTTACCATCACCTCCACTGTTTTTCCAGAAGTGGTCGGGTGCTA
CTCGGGCACGGGTACACTAAACGAAAATGAGGTTGTCTACACGGAGACGG
GAACGACCGATGACGGACAAAACGGTGTCGTGGCCAGGAACATTGGAGAG
GATAGTGCGCCAGATGTGAGTGTCAAACCCGAACGCCTGCACCGCGCAGC
ACATCAAAGTATCTTGCCAGAGCTGTTACGATCAAACTGCGTGTTGTCTT
AGATCGAGCCACTGCGTGGTAGGTTGTGTATCATATCTCGATTAGGTTGA
CGAATGAGCTGAAAATGGTGCACATGCCGTTAGTTTTCCTAGGTACGTAG
TTCCTTGAAGATGCTCTGCATGGTATCCCTCACACCCCACACCCCGCCCC
TTCTCACCGTTCAATCATGATAACACACTATAAATAAGTAGTGTTCTTGA
CATCGAGATATTGCATCGAAGAACACAAGGCGCCATAAGTACGATAATCG
GCTCCTTGGTACTTTGCCTTCTTTCTCCTCCTCTTTGTTCAGATACGCTG
GATTGTTGGATATTCATCGTTGGACACCACATCGAGAGAAGCCGAGGTTT
ACTGCGTCTCCACTGACTTGGCAGCCGACGTCCATCCGGCGGATGTAACA
TCCTGGATTTGTGAGTGACGCTTCATCTTTAGTTATTATAAGCTATCATT
ACTGGCTTGCGACTTACCCGATGGATGTAACATGGTTATGTGAGAAGCAA
CAAAAGCCCTGCCGGTACGGCACCCTTGGATTCTAATAGTACAGTAATAA
ATACCAACGGGAAACATAGCAACCCACCAGTTACACTTTTATAGCGCAAA
AATATTCTTCTCCCAGATACGCGCATGATTCATACCCATCCTCTCGTAGC
TCGTACCGTACCTACCGTCGTCTTGCCAACCTTACTTAGCTAGTGGCGTA
TTATGTGGTGCCGGCGGGAGAATCAACAATAACCCCGCTGACGAGTCGGC
GATGTTTCGTTCGTTTTCCGTTTCTCAGGCAACTTGAGCGGTGACGGCTC
CCAGATCTCCGACTTTGTGCTGGTGTCAGACACAGACTTTGCAGTAACTT
GCGGCTGTACCATGGGTATGACGTCATCGCCATCAACTACTCCTGGGAGC
GAACAGAACGCAAACGTGGGCCACCTATCGACCACCCTGTCCACCTTCGT
CGCCGTGGGAGTCGGCTTCACGGCCACGGTTGTCCACCTTGTCAGGCTGT
GATATTACCTCGCAGCATCGTCAATGACGACTAAAATATCAATAGTGCGG
GGTGAAGACATAAGTACTACCTTTTCCCGTCATCATCCGAATGCTGTGCA
ACGGATTTCTGTATCGATACCCGGCGTTCGTTTTGGCCCTTCAACTCGTC
AGAATGAGTCATGCA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig998:37147..38711+

>mRNA_A-nodosum_M_contig998.2.1 ID=mRNA_A-nodosum_M_contig998.2.1|Name=mRNA_A-nodosum_M_contig998.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=657bp|location=Sequence derived from alignment at A-nodosum_M_contig998:37147..38711+ (Ascophyllum nodosum dioecious)
ATCGGCACCGAGACTACTACTACCACCGACATCGGCACCGAGACCACTAC
CACCACCAACATCGGCACCGAGACCACTACCACTACCGACACCGGCACCG
AGACCACTTCTACTCCCGAGACCACTAATTCTGCTACCTGCAACGAGGGG
GAATCTCTTACCATCACCTCCACTGTTTTTCCAGAAGTGGTCGGGTGCTA
CTCGGGCACGGGTACACTAAACGAAAATGAGGTTGTCTACACGGAGACGG
GAACGACCGATGACGGACAAAACGGTGTCGTGGCCAGGAACATTGGAGAG
GATAGTGCGCCAGATATACGCTGGATTGTTGGATATTCATCGTTGGACAC
CACATCGAGAGAAGCCGAGGTTTACTGCGTCTCCACTGACTTGGCAGCCG
ACGTCCATCCGGCGGATGTAACATCCTGGATTTGCAACTTGAGCGGTGAC
GGCTCCCAGATCTCCGACTTTGTGCTGGTGTCAGACACAGACTTTGCAGT
AACTTGCGGCTGTACCATGGGTATGACGTCATCGCCATCAACTACTCCTG
GGAGCGAACAGAACGCAAACGTGGGCCACCTATCGACCACCCTGTCCACC
TTCGTCGCCGTGGGAGTCGGCTTCACGGCCACGGTTGTCCACCTTGTCAG
GCTGTGA
back to top