Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 822 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 657 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870544.3330672-CDS-A-nodosum_M_contig998:37146..37461 | 1680870544.3330672-CDS-A-nodosum_M_contig998:37146..37461 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig998 37147..37461 + |
| 1680870544.3485572-CDS-A-nodosum_M_contig998:37838..37956 | 1680870544.3485572-CDS-A-nodosum_M_contig998:37838..37956 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig998 37839..37956 + |
| 1680870544.3605607-CDS-A-nodosum_M_contig998:38324..38548 | 1680870544.3605607-CDS-A-nodosum_M_contig998:38324..38548 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig998 38325..38548 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870544.3722887-UTR-A-nodosum_M_contig998:38548..38711 | 1680870544.3722887-UTR-A-nodosum_M_contig998:38548..38711 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig998 38549..38711 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig998.2.1 >prot_A-nodosum_M_contig998.2.1 ID=prot_A-nodosum_M_contig998.2.1|Name=mRNA_A-nodosum_M_contig998.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=219bp
IGTETTTTTDIGTETTTTTNIGTETTTTTDTGTETTSTPETTNSATCNEG
ESLTITSTVFPEVVGCYSGTGTLNENEVVYTETGTTDDGQNGVVARNIGE
DSAPDIRWIVGYSSLDTTSREAEVYCVSTDLAADVHPADVTSWICNLSGD
GSQISDFVLVSDTDFAVTCGCTMGMTSSPSTTPGSEQNANVGHLSTTLST
FVAVGVGFTATVVHLVRL* back to topmRNA from alignment at A-nodosum_M_contig998:37147..38711+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig998.2.1 ID=mRNA_A-nodosum_M_contig998.2.1|Name=mRNA_A-nodosum_M_contig998.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1565bp|location=Sequence derived from alignment at A-nodosum_M_contig998:37147..38711+ (Ascophyllum nodosum dioecious)
ATCGGCACCGAGACTACTACTACCACCGACATCGGCACCGAGACCACTAC
CACCACCAACATCGGCACCGAGACCACTACCACTACCGACACCGGCACCG
AGACCACTTCTACTCCCGAGACCACTAATTCTGCTACCTGCAACGAGGGG
GAATCTCTTACCATCACCTCCACTGTTTTTCCAGAAGTGGTCGGGTGCTA
CTCGGGCACGGGTACACTAAACGAAAATGAGGTTGTCTACACGGAGACGG
GAACGACCGATGACGGACAAAACGGTGTCGTGGCCAGGAACATTGGAGAG
GATAGTGCGCCAGATGTGAGTGTCAAACCCGAACGCCTGCACCGCGCAGC
ACATCAAAGTATCTTGCCAGAGCTGTTACGATCAAACTGCGTGTTGTCTT
AGATCGAGCCACTGCGTGGTAGGTTGTGTATCATATCTCGATTAGGTTGA
CGAATGAGCTGAAAATGGTGCACATGCCGTTAGTTTTCCTAGGTACGTAG
TTCCTTGAAGATGCTCTGCATGGTATCCCTCACACCCCACACCCCGCCCC
TTCTCACCGTTCAATCATGATAACACACTATAAATAAGTAGTGTTCTTGA
CATCGAGATATTGCATCGAAGAACACAAGGCGCCATAAGTACGATAATCG
GCTCCTTGGTACTTTGCCTTCTTTCTCCTCCTCTTTGTTCAGATACGCTG
GATTGTTGGATATTCATCGTTGGACACCACATCGAGAGAAGCCGAGGTTT
ACTGCGTCTCCACTGACTTGGCAGCCGACGTCCATCCGGCGGATGTAACA
TCCTGGATTTGTGAGTGACGCTTCATCTTTAGTTATTATAAGCTATCATT
ACTGGCTTGCGACTTACCCGATGGATGTAACATGGTTATGTGAGAAGCAA
CAAAAGCCCTGCCGGTACGGCACCCTTGGATTCTAATAGTACAGTAATAA
ATACCAACGGGAAACATAGCAACCCACCAGTTACACTTTTATAGCGCAAA
AATATTCTTCTCCCAGATACGCGCATGATTCATACCCATCCTCTCGTAGC
TCGTACCGTACCTACCGTCGTCTTGCCAACCTTACTTAGCTAGTGGCGTA
TTATGTGGTGCCGGCGGGAGAATCAACAATAACCCCGCTGACGAGTCGGC
GATGTTTCGTTCGTTTTCCGTTTCTCAGGCAACTTGAGCGGTGACGGCTC
CCAGATCTCCGACTTTGTGCTGGTGTCAGACACAGACTTTGCAGTAACTT
GCGGCTGTACCATGGGTATGACGTCATCGCCATCAACTACTCCTGGGAGC
GAACAGAACGCAAACGTGGGCCACCTATCGACCACCCTGTCCACCTTCGT
CGCCGTGGGAGTCGGCTTCACGGCCACGGTTGTCCACCTTGTCAGGCTGT
GATATTACCTCGCAGCATCGTCAATGACGACTAAAATATCAATAGTGCGG
GGTGAAGACATAAGTACTACCTTTTCCCGTCATCATCCGAATGCTGTGCA
ACGGATTTCTGTATCGATACCCGGCGTTCGTTTTGGCCCTTCAACTCGTC
AGAATGAGTCATGCA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig998:37147..38711+ >mRNA_A-nodosum_M_contig998.2.1 ID=mRNA_A-nodosum_M_contig998.2.1|Name=mRNA_A-nodosum_M_contig998.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=657bp|location=Sequence derived from alignment at A-nodosum_M_contig998:37147..38711+ (Ascophyllum nodosum dioecious)
ATCGGCACCGAGACTACTACTACCACCGACATCGGCACCGAGACCACTAC
CACCACCAACATCGGCACCGAGACCACTACCACTACCGACACCGGCACCG
AGACCACTTCTACTCCCGAGACCACTAATTCTGCTACCTGCAACGAGGGG
GAATCTCTTACCATCACCTCCACTGTTTTTCCAGAAGTGGTCGGGTGCTA
CTCGGGCACGGGTACACTAAACGAAAATGAGGTTGTCTACACGGAGACGG
GAACGACCGATGACGGACAAAACGGTGTCGTGGCCAGGAACATTGGAGAG
GATAGTGCGCCAGATATACGCTGGATTGTTGGATATTCATCGTTGGACAC
CACATCGAGAGAAGCCGAGGTTTACTGCGTCTCCACTGACTTGGCAGCCG
ACGTCCATCCGGCGGATGTAACATCCTGGATTTGCAACTTGAGCGGTGAC
GGCTCCCAGATCTCCGACTTTGTGCTGGTGTCAGACACAGACTTTGCAGT
AACTTGCGGCTGTACCATGGGTATGACGTCATCGCCATCAACTACTCCTG
GGAGCGAACAGAACGCAAACGTGGGCCACCTATCGACCACCCTGTCCACC
TTCGTCGCCGTGGGAGTCGGCTTCACGGCCACGGTTGTCCACCTTGTCAG
GCTGTGA back to top
|