mRNA_A-nodosum_M_contig998.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig998.1.1
Unique NamemRNA_A-nodosum_M_contig998.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig998.1.1 vs. uniprot
Match: A0A6H5JLC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.490e-9
Identity = 94/300 (31.33%), Postives = 126/300 (42.00%), Query Frame = 1 
Query:  193 RGLQTSCAEGDPFTVTSSVFPSLEGCVLYSGFVAADGNLVYNSSSXXXXXXXXXXXXTDGSAETFWGVYEILDDGSFDFHCVSNETSTTLSYPVEATWIC--DLDGDGQADFPTSSQFSTSCGCSTTTVSTTDIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCAEGDLFTIISSVFPSLEGCVLYSGFVTTDGNLVYNSSSA---AIFSVSSSTTTTDGSAETFWGVFEILD-------DGSFDFHCVSNETSTALPFPVEATWICDVDGDGELEF-PTSSQFSTSCGCS 1053
            R LQT CAEG   TVTSS+FP LEGC++    +   G + +   +             D  AE  W  Y      S    C+S E  T++ +P  ATW C  D   DG     T + F   CGC                   XXXXXXXXXXXX                SC+EG+ FT+  S  P  +GC L +GF  +D   VY  +     A   + S  T+ D   E +W +  + +       DG    +C S E +  +  P +ATW+C         F P  + F+  CGCS
Sbjct:   64 RRLQT-CAEGAGVTVTSSMFPLLEGCLVEMDLIEG-GEVEFVGETGVIASELNSD---DIDAEYIWVAY--YGTTSLAIACISLEPVTSV-HPSTATWYCVDDTTEDGIVA-ATDTTFGVDCGCD-----------------DXXXXXXXXXXXXPAPNVDSTTPAAPSGSSCSEGESFTVDISALPGADGCYLSTGFTLSD-EYVYTQTGGVGGAEMWIYSLPTSQDADPEIYWYLGYVPEITSSSEVDGEPTIYCGSFEQAGTV-HPADATWVCIFASSSTQTFGPDGASFT--CGCS 333
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BLAST of mRNA_A-nodosum_M_contig998.1.1 vs. uniprot
Match: D7G0B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.130e-9
Identity = 103/298 (34.56%), Postives = 137/298 (45.97%), Query Frame = 1 
Query:  193 RGLQTSCAEGDPFTVTSSVFPSLEGCVLYSGFVAADGNLVYNSSSXXXXXXXXXXXXTDGSAETFWGVYEILDDGSFDFHCVSNETSTTLSYPVEATWIC--DLDGDGQADFPTSSQFSTSCGCSTTTVSTTDIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCAEGDLFTIISSVFPSLEGCVLYSGFVTTDGNLVYNSSSA--AIFSVSSSTTTTDGSAETFWG---VFEILDDGSFD----FHCVSNETSTALPFPVEATWICDVDGDGELEFPTSSQFSTSCGCS 1053
            R LQT CAEG   TVTSS+FP LEGC++ +  +   G   +   +             D  AE  W  Y    + S    C S E  T+ ++P  ATW C  D   DG     T + F   CGC                  XXXXXXXXXXXXXXXXXXXXXXXX     SC+EG+ FT+  S  P  +GC L +G+  +D ++   +     A   + S  ++ D  A  +W    V EI    +FD    ++C S E +  +  P +A W+C         F      S +CGCS
Sbjct:   64 RRLQT-CAEGSGVTVTSSMFPLLEGCLVETDLIEG-GEAEFVGETGMIAAVLNSD---DVDAEYIWAAYH--GETSLTIACFSLEPVTS-AHPSTATWYCVDDTTEDGIVA-ATDTTFGVDCGCD-----------------XXXXXXXXXXXXXXXXXXXXXXXXAPSGSSCSEGESFTVDISALPEADGCYLSTGYTLSDEHVYTQTGGVGGAEMWIHSLPSSDDDDAVIYWYLAYVPEITSSSAFDGELAYYCGSFEPADTV-HPADANWVCTFASSSTQTFGADGA-SFTCGCS 333
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLC2_9PHAE1.490e-931.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B7_ECTSI2.130e-934.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig998contigA-nodosum_M_contig998:32145..34657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1092
Hectar predicted targeting categoryother localisation
Exons5
Cds size1089
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870544.2533686-CDS-A-nodosum_M_contig998:32144..325221680870544.2533686-CDS-A-nodosum_M_contig998:32144..32522Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 32145..32522 +
1680870544.266308-CDS-A-nodosum_M_contig998:33028..331401680870544.266308-CDS-A-nodosum_M_contig998:33028..33140Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 33029..33140 +
1680870544.2782164-CDS-A-nodosum_M_contig998:33365..337451680870544.2782164-CDS-A-nodosum_M_contig998:33365..33745Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 33366..33745 +
1680870544.2882001-CDS-A-nodosum_M_contig998:34211..343231680870544.2882001-CDS-A-nodosum_M_contig998:34211..34323Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 34212..34323 +
1680870544.3029847-CDS-A-nodosum_M_contig998:34548..346551680870544.3029847-CDS-A-nodosum_M_contig998:34548..34655Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig998 34549..34655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig998.1.1prot_A-nodosum_M_contig998.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig998 32145..34655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig998.1.1

>prot_A-nodosum_M_contig998.1.1 ID=prot_A-nodosum_M_contig998.1.1|Name=mRNA_A-nodosum_M_contig998.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=363bp
GSPQSTRESIAGNPRAVDGSTTMERLGLFEEPVMLPITTIPKQEGIPPLL
YEEGWNGAEGKRSRRGLQTSCAEGDPFTVTSSVFPSLEGCVLYSGFVAAD
GNLVYNSSSAAIISVSSSTTTTDGSAETFWGVYEILDDGSFDFHCVSNET
STTLSYPVEATWICDLDGDGQADFPTSSQFSTSCGCSTTTVSTTDIGTET
TTTTDIGTETTTTTDIGTETTTTTDIGTETTTTSCAEGDLFTIISSVFPS
LEGCVLYSGFVTTDGNLVYNSSSAAIFSVSSSTTTTDGSAETFWGVFEIL
DDGSFDFHCVSNETSTALPFPVEATWICDVDGDGELEFPTSSQFSTSCGC
STTTVSTTDIGTE
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mRNA from alignment at A-nodosum_M_contig998:32145..34657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig998.1.1 ID=mRNA_A-nodosum_M_contig998.1.1|Name=mRNA_A-nodosum_M_contig998.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2513bp|location=Sequence derived from alignment at A-nodosum_M_contig998:32145..34657+ (Ascophyllum nodosum dioecious)
GGAAGCCCGCAATCAACTCGAGAAAGCATTGCTGGTAATCCTCGAGCGGT
GGACGGGTCTACGACGATGGAACGCCTAGGACTTTTCGAAGAGCCGGTGA
TGCTTCCCATAACAACCATCCCTAAACAAGAGGGTATACCGCCGCTTCTT
TACGAAGAAGGTTGGAATGGTGCCGAAGGAAAGCGCTCACGACGCGGGCT
CCAGACTTCTTGCGCAGAGGGGGACCCGTTTACCGTAACATCTTCAGTGT
TTCCTTCACTGGAGGGATGTGTGCTCTACTCGGGATTTGTGGCGGCCGAC
GGCAACCTCGTGTACAACTCAAGCTCGGCGGCGATAATTTCAGTCTCATC
TTCTACCACCACCACCGATGGTTCCGCTGTAAGTATCTCCTGATGCGTGT
TCAGCAATACGTCGAAGTACACAAAAAACAACCAAAACACTCCTGCGTGG
CCTTCGTCCTGTCTAATCCCGACTGGTGCGTCCACATAGTAACCGAAAGG
TGTAGTCTGACGTCCAAAATAAATGGGATGGCAACAAACAAACAAACAAC
ACACGACTTAGAGCCTCGGGGTTTACGATGTAATCTTCCATTCCTACGTT
TCTGCTCACTAATGTAAATAAAGTGTACGGGCCTTTGATATAGGGCTGGA
TGTATGTATACAGCGGAATCCTGTTTACGCAATGAGAAAAGAGCAGATAC
GTGAGCTCGGGAGGGGTTCGGAGCGGAGTTGCCGTGGACTTCTACGAAAG
TGCTTGGAGGAGGAGTGTCAGGCCACGAACTACCGCCGAGCGCAAGGGTA
GTATCGCCAAACGACTTGCGTTCTGTTTTTAAATCGGTCCCTCATCAAAG
TTTGTCCAACGACCCGTTTGTGCTGTTCACACAGGAAACCTTCTGGGGGG
TGTATGAGATTTTGGACGATGGCTCCTTCGACTTCCACTGCGTCTCAAAC
GAGACCTCGACTACTCTGTCGTATCCAGTGGAAGCAACGTGGATATGTAA
GTCTGGTGGCTAAAACCCCGCGAATCGTAAGTGCTATCGATATCAACATC
AACTACCATTCCCACCCCAACGTCTCCGAAGGACCCTCCTTTCGCGTTGC
TTTGACATCTGAGAAGAATGTATAGTGTACGTGAGGGTATCCAGTACGGG
CTTCGTTATTGTGTGGAATATAGAGCCCCAGCTTTCATTCACCAGCAAAC
ATAATGTCTATTCTGAGACAGGTGATTTGGATGGAGACGGCCAGGCTGAT
TTTCCGACGTCTTCGCAATTTTCCACATCTTGCGGCTGTTCGACAACGAC
GGTAAGCACCACTGACATCGGGACCGAGACCACTACCACCACCGACATCG
GGACCGAGACCACTACCACCACCGACATCGGCACCGAGACCACTACCACC
ACCGACATCGGCACCGAAACCACTACCACTTCTTGCGCAGAGGGGGACCT
GTTTACCATAATATCTTCGGTGTTCCCTTCACTGGAGGGTTGTGTGCTCT
ACTCGGGATTTGTGACGACCGACGGCAACCTCGTGTACAACTCAAGCTCG
GCGGCAATATTTTCAGTTTCATCTTCTACCACCACCACCGATGGTTCCGC
TGTGAGTGTCCCCTGATGCGTGTTCAGCAATACGTCGAAGTACACAAAAA
ACAACCAAAACACTCCTGCGTGGCCTTCGTCCTGTCTAACCCCGACTGGT
GCGTCCACATAGTAACCGAAAGGTGTAGTCTGACGTCCAAAATAAATGGG
ATGGCAACAAACAAACAAACAACACACGACTTAGAGCCTCGGGGTTCACG
ATGTAATCTGTCCCTCCTACGTTTCTGCTCACTAATGTAAACAAAGTGTA
CGAGCCTTTGATATAGGGCTAGATGTATGTATTCAGCGGAATCCTGTTTA
CGCAATGAGAAAAGAGCAGATGCGTGAGCTCGGGAGGGGTTCGGGGCGGA
GTTGCCGTGGACTTCTACGAAAGTCCTTTGAGGAGGAGTGTCAGGCCACG
AACTACCGCCGAGCGCAAGGGTAGTGTTCCAAAAACGACTTGCGTTCTGT
TTGTGCTGTTCACACAGGAAACCTTTTGGGGGGTGTTCGAGATTTTGGAC
GATGGCTCCTTCGACTTCCACTGCGTCTCAAACGAGACCTCGACTGCTCT
GCCGTTTCCAGTGGAAGCAACGTGGATATGTAAGTCTGGTGGCTAAAACC
CCGCGAATTATAAGTGTTATCGGTATCACCATTTACTACCATTCCCACCC
CAACGTCGCAAGAGGACCCTCCTTTCGCATTGTCTTGACATCTGAGAAGA
ATGTATAGTGTACGTTTGGGTATCCATTACGGGCTCCGTTATTGTGTGGA
ATATAGAGCCCCAGCTTTCATTCACCAGCAAACATAATGTCTATTCTGAG
ACAGGTGATGTGGATGGAGACGGCGAGCTCGAATTTCCGACGTCTTCGCA
ATTTTCCACATCTTGCGGCTGTTCGACAACGACGGTAAGCACCACTGACA
TCGGGACCGAGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig998:32145..34657+

>mRNA_A-nodosum_M_contig998.1.1 ID=mRNA_A-nodosum_M_contig998.1.1|Name=mRNA_A-nodosum_M_contig998.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1089bp|location=Sequence derived from alignment at A-nodosum_M_contig998:32145..34657+ (Ascophyllum nodosum dioecious)
GGAAGCCCGCAATCAACTCGAGAAAGCATTGCTGGTAATCCTCGAGCGGT
GGACGGGTCTACGACGATGGAACGCCTAGGACTTTTCGAAGAGCCGGTGA
TGCTTCCCATAACAACCATCCCTAAACAAGAGGGTATACCGCCGCTTCTT
TACGAAGAAGGTTGGAATGGTGCCGAAGGAAAGCGCTCACGACGCGGGCT
CCAGACTTCTTGCGCAGAGGGGGACCCGTTTACCGTAACATCTTCAGTGT
TTCCTTCACTGGAGGGATGTGTGCTCTACTCGGGATTTGTGGCGGCCGAC
GGCAACCTCGTGTACAACTCAAGCTCGGCGGCGATAATTTCAGTCTCATC
TTCTACCACCACCACCGATGGTTCCGCTGAAACCTTCTGGGGGGTGTATG
AGATTTTGGACGATGGCTCCTTCGACTTCCACTGCGTCTCAAACGAGACC
TCGACTACTCTGTCGTATCCAGTGGAAGCAACGTGGATATGTGATTTGGA
TGGAGACGGCCAGGCTGATTTTCCGACGTCTTCGCAATTTTCCACATCTT
GCGGCTGTTCGACAACGACGGTAAGCACCACTGACATCGGGACCGAGACC
ACTACCACCACCGACATCGGGACCGAGACCACTACCACCACCGACATCGG
CACCGAGACCACTACCACCACCGACATCGGCACCGAAACCACTACCACTT
CTTGCGCAGAGGGGGACCTGTTTACCATAATATCTTCGGTGTTCCCTTCA
CTGGAGGGTTGTGTGCTCTACTCGGGATTTGTGACGACCGACGGCAACCT
CGTGTACAACTCAAGCTCGGCGGCAATATTTTCAGTTTCATCTTCTACCA
CCACCACCGATGGTTCCGCTGAAACCTTTTGGGGGGTGTTCGAGATTTTG
GACGATGGCTCCTTCGACTTCCACTGCGTCTCAAACGAGACCTCGACTGC
TCTGCCGTTTCCAGTGGAAGCAACGTGGATATGTGATGTGGATGGAGACG
GCGAGCTCGAATTTCCGACGTCTTCGCAATTTTCCACATCTTGCGGCTGT
TCGACAACGACGGTAAGCACCACTGACATCGGGACCGAG
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