Homology
BLAST of mRNA_A-nodosum_M_contig998.1.1 vs. uniprot
Match:
A0A6H5JLC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC2_9PHAE)
HSP 1 Score: 70.5 bits (171), Expect = 1.490e-9
Identity = 94/300 (31.33%), Postives = 126/300 (42.00%), Query Frame = 1
Query: 193 RGLQTSCAEGDPFTVTSSVFPSLEGCVLYSGFVAADGNLVYNSSSXXXXXXXXXXXXTDGSAETFWGVYEILDDGSFDFHCVSNETSTTLSYPVEATWIC--DLDGDGQADFPTSSQFSTSCGCSTTTVSTTDIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCAEGDLFTIISSVFPSLEGCVLYSGFVTTDGNLVYNSSSA---AIFSVSSSTTTTDGSAETFWGVFEILD-------DGSFDFHCVSNETSTALPFPVEATWICDVDGDGELEF-PTSSQFSTSCGCS 1053
R LQT CAEG TVTSS+FP LEGC++ + G + + + D AE W Y S C+S E T++ +P ATW C D DG T + F CGC XXXXXXXXXXXX SC+EG+ FT+ S P +GC L +GF +D VY + A + S T+ D E +W + + + DG +C S E + + P +ATW+C F P + F+ CGCS
Sbjct: 64 RRLQT-CAEGAGVTVTSSMFPLLEGCLVEMDLIEG-GEVEFVGETGVIASELNSD---DIDAEYIWVAY--YGTTSLAIACISLEPVTSV-HPSTATWYCVDDTTEDGIVA-ATDTTFGVDCGCD-----------------DXXXXXXXXXXXXPAPNVDSTTPAAPSGSSCSEGESFTVDISALPGADGCYLSTGFTLSD-EYVYTQTGGVGGAEMWIYSLPTSQDADPEIYWYLGYVPEITSSSEVDGEPTIYCGSFEQAGTV-HPADATWVCIFASSSTQTFGPDGASFT--CGCS 333
BLAST of mRNA_A-nodosum_M_contig998.1.1 vs. uniprot
Match:
D7G0B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B7_ECTSI)
HSP 1 Score: 70.1 bits (170), Expect = 2.130e-9
Identity = 103/298 (34.56%), Postives = 137/298 (45.97%), Query Frame = 1
Query: 193 RGLQTSCAEGDPFTVTSSVFPSLEGCVLYSGFVAADGNLVYNSSSXXXXXXXXXXXXTDGSAETFWGVYEILDDGSFDFHCVSNETSTTLSYPVEATWIC--DLDGDGQADFPTSSQFSTSCGCSTTTVSTTDIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCAEGDLFTIISSVFPSLEGCVLYSGFVTTDGNLVYNSSSA--AIFSVSSSTTTTDGSAETFWG---VFEILDDGSFD----FHCVSNETSTALPFPVEATWICDVDGDGELEFPTSSQFSTSCGCS 1053
R LQT CAEG TVTSS+FP LEGC++ + + G + + D AE W Y + S C S E T+ ++P ATW C D DG T + F CGC XXXXXXXXXXXXXXXXXXXXXXXX SC+EG+ FT+ S P +GC L +G+ +D ++ + A + S ++ D A +W V EI +FD ++C S E + + P +A W+C F S +CGCS
Sbjct: 64 RRLQT-CAEGSGVTVTSSMFPLLEGCLVETDLIEG-GEAEFVGETGMIAAVLNSD---DVDAEYIWAAYH--GETSLTIACFSLEPVTS-AHPSTATWYCVDDTTEDGIVA-ATDTTFGVDCGCD-----------------XXXXXXXXXXXXXXXXXXXXXXXXAPSGSSCSEGESFTVDISALPEADGCYLSTGYTLSDEHVYTQTGGVGGAEMWIHSLPSSDDDDAVIYWYLAYVPEITSSSAFDGELAYYCGSFEPADTV-HPADANWVCTFASSSTQTFGADGA-SFTCGCS 333
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.49e-9 / Id = 31.33 Expect = 2.13e-9 / Id = 34.56 Sequence A0A6H5JLC2_9PHAE D7G0B7_ECTSI
Match Name E-value Identity Description
A0A6H5JLC2_9PHAE 1.490e-9 31.33 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7G0B7_ECTSI 2.130e-9 34.56 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 1092 Hectar predicted targeting category other localisation Exons 5 Cds size 1089
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680870544.2533686-CDS-A-nodosum_M_contig998:32144..32522 1680870544.2533686-CDS-A-nodosum_M_contig998:32144..32522 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig998 32145..32522 + 1680870544.266308-CDS-A-nodosum_M_contig998:33028..33140 1680870544.266308-CDS-A-nodosum_M_contig998:33028..33140 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig998 33029..33140 + 1680870544.2782164-CDS-A-nodosum_M_contig998:33365..33745 1680870544.2782164-CDS-A-nodosum_M_contig998:33365..33745 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig998 33366..33745 + 1680870544.2882001-CDS-A-nodosum_M_contig998:34211..34323 1680870544.2882001-CDS-A-nodosum_M_contig998:34211..34323 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig998 34212..34323 + 1680870544.3029847-CDS-A-nodosum_M_contig998:34548..34655 1680870544.3029847-CDS-A-nodosum_M_contig998:34548..34655 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig998 34549..34655 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig998.1.1
>prot_A-nodosum_M_contig998.1.1 ID=prot_A-nodosum_M_contig998.1.1|Name=mRNA_A-nodosum_M_contig998.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=363bp
GSPQSTRESIAGNPRAVDGSTTMERLGLFEEPVMLPITTIPKQEGIPPLL back to top mRNA from alignment at A-nodosum_M_contig998:32145..34657+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig998.1.1 ID=mRNA_A-nodosum_M_contig998.1.1|Name=mRNA_A-nodosum_M_contig998.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2513bp|location=Sequence derived from alignment at A-nodosum_M_contig998:32145..34657+ (Ascophyllum nodosum dioecious)GGAAGCCCGCAATCAACTCGAGAAAGCATTGCTGGTAATCCTCGAGCGGT
GGACGGGTCTACGACGATGGAACGCCTAGGACTTTTCGAAGAGCCGGTGA
TGCTTCCCATAACAACCATCCCTAAACAAGAGGGTATACCGCCGCTTCTT
TACGAAGAAGGTTGGAATGGTGCCGAAGGAAAGCGCTCACGACGCGGGCT
CCAGACTTCTTGCGCAGAGGGGGACCCGTTTACCGTAACATCTTCAGTGT
TTCCTTCACTGGAGGGATGTGTGCTCTACTCGGGATTTGTGGCGGCCGAC
GGCAACCTCGTGTACAACTCAAGCTCGGCGGCGATAATTTCAGTCTCATC
TTCTACCACCACCACCGATGGTTCCGCT GTAAGTATCTCCTGATGCGTGT
TCAGCAATACGTCGAAGTACACAAAAAACAACCAAAACACTCCTGCGTGG
CCTTCGTCCTGTCTAATCCCGACTGGTGCGTCCACATAGTAACCGAAAGG
TGTAGTCTGACGTCCAAAATAAATGGGATGGCAACAAACAAACAAACAAC
ACACGACTTAGAGCCTCGGGGTTTACGATGTAATCTTCCATTCCTACGTT
TCTGCTCACTAATGTAAATAAAGTGTACGGGCCTTTGATATAGGGCTGGA
TGTATGTATACAGCGGAATCCTGTTTACGCAATGAGAAAAGAGCAGATAC
GTGAGCTCGGGAGGGGTTCGGAGCGGAGTTGCCGTGGACTTCTACGAAAG
TGCTTGGAGGAGGAGTGTCAGGCCACGAACTACCGCCGAGCGCAAGGGTA
GTATCGCCAAACGACTTGCGTTCTGTTTTTAAATCGGTCCCTCATCAAAG
TTTGTCCAACGACCCGTTTGTGCTGTTCACACAGGAAACCTTCTGGGGGG
TGTATGAGATTTTGGACGATGGCTCCTTCGACTTCCACTGCGTCTCAAAC
GAGACCTCGACTACTCTGTCGTATCCAGTGGAAGCAACGTGGATAT GTAA
GTCTGGTGGCTAAAACCCCGCGAATCGTAAGTGCTATCGATATCAACATC
AACTACCATTCCCACCCCAACGTCTCCGAAGGACCCTCCTTTCGCGTTGC
TTTGACATCTGAGAAGAATGTATAGTGTACGTGAGGGTATCCAGTACGGG
CTTCGTTATTGTGTGGAATATAGAGCCCCAGCTTTCATTCACCAGCAAAC
ATAATGTCTATTCTGAGACAGGTGATTTGGATGGAGACGGCCAGGCTGAT
TTTCCGACGTCTTCGCAATTTTCCACATCTTGCGGCTGTTCGACAACGAC
GGTAAGCACCACTGACATCGGGACCGAGACCACTACCACCACCGACATCG
GGACCGAGACCACTACCACCACCGACATCGGCACCGAGACCACTACCACC
ACCGACATCGGCACCGAAACCACTACCACTTCTTGCGCAGAGGGGGACCT
GTTTACCATAATATCTTCGGTGTTCCCTTCACTGGAGGGTTGTGTGCTCT
ACTCGGGATTTGTGACGACCGACGGCAACCTCGTGTACAACTCAAGCTCG
GCGGCAATATTTTCAGTTTCATCTTCTACCACCACCACCGATGGTTCCGC
T GTGAGTGTCCCCTGATGCGTGTTCAGCAATACGTCGAAGTACACAAAAA
ACAACCAAAACACTCCTGCGTGGCCTTCGTCCTGTCTAACCCCGACTGGT
GCGTCCACATAGTAACCGAAAGGTGTAGTCTGACGTCCAAAATAAATGGG
ATGGCAACAAACAAACAAACAACACACGACTTAGAGCCTCGGGGTTCACG
ATGTAATCTGTCCCTCCTACGTTTCTGCTCACTAATGTAAACAAAGTGTA
CGAGCCTTTGATATAGGGCTAGATGTATGTATTCAGCGGAATCCTGTTTA
CGCAATGAGAAAAGAGCAGATGCGTGAGCTCGGGAGGGGTTCGGGGCGGA
GTTGCCGTGGACTTCTACGAAAGTCCTTTGAGGAGGAGTGTCAGGCCACG
AACTACCGCCGAGCGCAAGGGTAGTGTTCCAAAAACGACTTGCGTTCTGT
TTGTGCTGTTCACACAGGAAACCTTTTGGGGGGTGTTCGAGATTTTGGAC
GATGGCTCCTTCGACTTCCACTGCGTCTCAAACGAGACCTCGACTGCTCT
GCCGTTTCCAGTGGAAGCAACGTGGATAT GTAAGTCTGGTGGCTAAAACC
CCGCGAATTATAAGTGTTATCGGTATCACCATTTACTACCATTCCCACCC
CAACGTCGCAAGAGGACCCTCCTTTCGCATTGTCTTGACATCTGAGAAGA
ATGTATAGTGTACGTTTGGGTATCCATTACGGGCTCCGTTATTGTGTGGA
ATATAGAGCCCCAGCTTTCATTCACCAGCAAACATAATGTCTATTCTGAG
ACAGGTGATGTGGATGGAGACGGCGAGCTCGAATTTCCGACGTCTTCGCA
ATTTTCCACATCTTGCGGCTGTTCGACAACGACGGTAAGCACCACTGACA
TCGGGACCGAG back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig998:32145..34657+
>mRNA_A-nodosum_M_contig998.1.1 ID=mRNA_A-nodosum_M_contig998.1.1|Name=mRNA_A-nodosum_M_contig998.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1089bp|location=Sequence derived from alignment at A-nodosum_M_contig998:32145..34657+ (Ascophyllum nodosum dioecious) back to top