mRNA_A-nodosum_M_contig9972.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9972.1.1
Unique NamemRNA_A-nodosum_M_contig9972.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.120e-17
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 WVGDSGASCHMTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPITMIDVSYVPDLKFNLFSFYKAQQTH 252
            W+GDS ++ H T+D + +Y  RPP  ++  +   +G +LK EC G++DV+FH R D  +TM D++ VPDL F+L S    Q+TH
Sbjct:   16 WIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH 99
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.850e-8
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:   10 DSGASCHMTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFH-----GRSDEPITMIDVSYVPDLKFNLFSFYKAQQ 246
            DSGA+    + + +M+ +RP    ++ +   NGT L+V+CVG +++ FH     G  D  + M DV  VP + FNLFS +  Q+
Sbjct:  643 DSGATNTFVSSSHQMFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQR 726
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A834WYN7_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WYN7_9FABA)

HSP 1 Score: 52.8 bits (125), Expect = 4.950e-6
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 WVGDSGASCHMTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPITMIDVSYVPDLKFNLFSFYKAQQ 246
            W  DSGAS H+TNDAS ++  +P +   ++V  +NGT L +  VG  ++  H  S + +++ ++ +VP +  NL S  K  Q
Sbjct:  322 WYPDSGASHHITNDASNLHSHQP-YTGSEQVHAANGTGLVIHNVGQSEI--HTNSSKILSLKNLFHVPSVTKNLLSVSKCAQ 400
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A835CFI5_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CFI5_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 1.280e-5
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    1 WVGDSGASCHMTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPITMIDVSYVPDLKFNLFSFYK 237
            W  DSGAS H+TNDAS +  +R P+  Q+ V T+NGT L ++ VG  ++     + + + +  + +VP +  NL S  K
Sbjct:  310 WYPDSGASSHLTNDASNLQ-VRQPYNGQELVHTANGTGLPIQSVGYSNI--SSSNSQILHLSQLYHVPSVSKNLISVSK 385
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A834T3C8_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834T3C8_9FABA)

HSP 1 Score: 50.8 bits (120), Expect = 2.250e-5
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    1 WVGDSGASCHMTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPITMIDVSYVPDLKFNLFSFYKAQQ 246
            W+ DSGAS HMT +AS ++    P     +V  ++GT  KV  +G+I +         +T+++V YVP L  NL S  K  Q
Sbjct:   74 WIVDSGASDHMTGNAS-LFSTLAPCASSLQVKIADGTMAKVSAIGSIKI------STTLTLMNVLYVPALACNLLSISKLTQ 148
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BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Match: A0A177VM49_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VM49_9BASI)

HSP 1 Score: 49.7 bits (117), Expect = 6.190e-5
Identity = 29/90 (32.22%), Postives = 45/90 (50.00%), Query Frame = 1 
Query:    1 WVGDSGASCHMTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFH-----GRSDEPITMIDVSYVPDLKFNLFSFYKAQQTHV 255
            W+ DSGAS HMT +AS    + P       V+ ++G R+     G   V+ H     G     + + DV  +P+L++NL S +K  Q H+
Sbjct:   13 WILDSGASAHMTPNASCFAAIEP---STTAVVLADGKRILARGRGT--VVLHTVGQDGNVPGELVLFDVLLIPELRYNLISVFKLNQDHL 97
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE2.120e-1742.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE1.850e-835.71Integrase catalytic domain-containing protein n=5 ... [more]
A0A834WYN7_9FABA4.950e-635.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A835CFI5_9FABA1.280e-536.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A834T3C8_9FABA2.250e-536.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A177VM49_9BASI6.190e-532.22Integrase catalytic domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9972contigA-nodosum_M_contig9972:6243..6500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size258
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870544.1745927-CDS-A-nodosum_M_contig9972:6242..64701680870544.1745927-CDS-A-nodosum_M_contig9972:6242..6470Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9972 6243..6470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870544.1869175-UTR-A-nodosum_M_contig9972:6470..65001680870544.1869175-UTR-A-nodosum_M_contig9972:6470..6500Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9972 6471..6500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9972.1.1prot_A-nodosum_M_contig9972.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9972 6243..6470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9972.1.1

>prot_A-nodosum_M_contig9972.1.1 ID=prot_A-nodosum_M_contig9972.1.1|Name=mRNA_A-nodosum_M_contig9972.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
MTNDASKMYCMRPPHFDQKEVITSNGTRLKVECVGNIDVIFHGRSDEPIT
MIDVSYVPDLKFNLFSFYKAQQTHVI
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mRNA from alignment at A-nodosum_M_contig9972:6243..6500-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9972.1.1 ID=mRNA_A-nodosum_M_contig9972.1.1|Name=mRNA_A-nodosum_M_contig9972.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig9972:6243..6500- (Ascophyllum nodosum dioecious)
TGGGTAGGTGACAGTGGTGCATCCTGTCACATGACGAACGACGCATCTAA
GATGTACTGCATGAGACCACCGCACTTTGACCAAAAAGAAGTAATCACGA
GCAACGGTACTAGGCTGAAGGTGGAATGTGTCGGCAATATTGACGTGATT
TTTCACGGAAGAAGTGACGAACCGATAACAATGATTGACGTCTCGTACGT
ACCGGATTTGAAGTTCAATCTATTCTCGTTCTATAAGGCTCAACAAACGC
ATGTCATA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9972:6243..6500-

>mRNA_A-nodosum_M_contig9972.1.1 ID=mRNA_A-nodosum_M_contig9972.1.1|Name=mRNA_A-nodosum_M_contig9972.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig9972:6243..6500- (Ascophyllum nodosum dioecious)
ATGACGAACGACGCATCTAAGATGTACTGCATGAGACCACCGCACTTTGA
CCAAAAAGAAGTAATCACGAGCAACGGTACTAGGCTGAAGGTGGAATGTG
TCGGCAATATTGACGTGATTTTTCACGGAAGAAGTGACGAACCGATAACA
ATGATTGACGTCTCGTACGTACCGGATTTGAAGTTCAATCTATTCTCGTT
CTATAAGGCTCAACAAACGCATGTCATA
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