mRNA_A-nodosum_M_contig997.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig997.3.1
Unique NamemRNA_A-nodosum_M_contig997.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: D8LDW7_ECTSI (Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW7_ECTSI)

HSP 1 Score: 437 bits (1123), Expect = 1.200e-147
Identity = 211/325 (64.92%), Postives = 263/325 (80.92%), Query Frame = 1 
Query:  229 LVGVSIGDLFSPSPWPPEKVEEALSQAKASGYFACDAVKFWHCDAERILPTACQDHIRKVIVHANNDEMLTVDNWEHWINRHLRPIVRRIRRCKVFKEIFLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRDFLLFGPDPGYLDCGK----RYNNMFSA*YDAVVSALSKLG--VLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVNGTPLRPGRMDVYLFELYDESLKHGADFEKHFGLFDIEGAQK 1185
            +VGV+IGD  +P+PW PEK+E+AL+QA++SGYF+CDAVKFWHCDA R+LPTA QDHIRKV+VHANN EML+V +W  W+  HL P+V  +R  +V KEIFLAVGNE+L+PW VE FG RLVPC++EV+ AL++T L+DRVKLVTPL MS+L +SYPPSAGQ++EA+++VV +VVR LVRIGSPFCIN++PFFAR   SRDF+LFGPD GY D G+    RY NMF+A +DAVV+ +SKL   ++GAD +++VVTE GWP+A + MAD  SAR + AGA  AS  GTPLRPGR+DVYLFELYDE  + GA  EKHFGLFDI G  K
Sbjct:    1 MVGVNIGDTLTPTPWAPEKIEQALAQARSSGYFSCDAVKFWHCDASRVLPTAQQDHIRKVMVHANNHEMLSVSDWRAWVETHLSPVVGGLRGQRVHKEIFLAVGNEALAPWHVEMFGRRLVPCMKEVYTALLQTGLSDRVKLVTPLEMSILGASYPPSAGQVAEAHLEVVSEVVRFLVRIGSPFCINVYPFFAREHASRDFVLFGPDEGYTD-GEGGCLRYTNMFNAQFDAVVTGISKLKDCIVGADQLEMVVTEVGWPTAGSGMADKESARRFTAGATLASTKGTPLRPGRLDVYLFELYDECQQDGAAHEKHFGLFDIGGCPK 324
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A5K1GLM5_9MAGN (Uncharacterized protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GLM5_9MAGN)

HSP 1 Score: 150 bits (379), Expect = 3.430e-37
Identity = 98/228 (42.98%), Postives = 133/228 (58.33%), Query Frame = 1 
Query:  523 IFLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAY--VDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPDPGYLDCGKR--YNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPS---ARSYIAGAAA--ASVNGTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLF 1164
            + ++VGNE LS +      + LVP ++ +HAAL+E  LAD++K+ T   M+VL  S PPS G     Y  VDV++ +V  L + GSP  IN +P+FA G   R     F LF  + G  D   +  Y NMF A  DAV SAL+ LG      +D+VV ETGWP        GPS   A++Y  G  A   S++GTPLRPG+ +D Y+F L+DE LK GA  E++FGL+
Sbjct:   91 VLVSVGNEVLS-YGDGNMVSHLVPAMQNLHAALLEVSLADKIKVTTVHSMAVLQQSDPPSTGAFRPTYAGVDVMKQLVAFLQQTGSPLAINPYPYFAYGSDPRPETLAFCLFQQNQGRFDPNTKITYYNMFDAQVDAVHSALASLGFKD---VDIVVAETGWPYQGGATEVGPSVENAKAYNGGLVAHLRSMSGTPLRPGKPVDTYIFALFDEDLKGGATSERYFGLY 314
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: Q0J034_ORYSJ (Os09g0533200 protein n=10 Tax=Oryza TaxID=4527 RepID=Q0J034_ORYSJ)

HSP 1 Score: 150 bits (378), Expect = 7.310e-37
Identity = 94/227 (41.41%), Postives = 131/227 (57.71%), Query Frame = 1 
Query:  526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPD-PGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAA--AASVNGTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            +LAVGNE L  +  + +   LVP +  +HAALV   L D+VK+ +    SVL SSYPPSAG    A +DV+R ++R L   G+PF +N +PF +      +    + LFG   P   D    Y NMF A  DA+ +AL + G     A+ + VTETGWP+A    A   +A +Y A      A   GTP RPG  ++V+LF+LYDE  K GA+FE+HFG+F  +G++
Sbjct:  122 YLAVGNEVL--YNNQFYAPHLVPAMHNLHAALVSLGLGDKVKVSSAHASSVLASSYPPSAGAFDAASLDVLRPMLRFLADTGAPFMVNTYPFISYVNDPVNVQLGYALFGAGAPAVSDGALVYTNMFDATVDALAAALDREGF---GAVPIAVTETGWPTAGHPAATPQNAAAYNAKIVERVARGAGTPRRPGVPVEVFLFDLYDEDGKPGAEFERHFGIFRADGSK 343
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A8J5VKG8_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VKG8_ZIZPA)

HSP 1 Score: 144 bits (364), Expect = 6.670e-35
Identity = 92/227 (40.53%), Postives = 130/227 (57.27%), Query Frame = 1 
Query:  526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPD-PGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAA--AASVNGTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            +LAVGNE L  +  + +   LVP ++ +H+ALV   L  ++K+ +    SVL SSYPPSAG    A + V+R +++ L   G+PF +N +PF +      +    + LF    P   D    Y N+F A  DA+V+AL K G     AM V VTETGWP+A    A   +A +Y A     AA   GTP RP   ++V+LF+LYDE  K GA+FE+HFG+F  EG++
Sbjct:  123 YLAVGNEVL--YNNQFYAPHLVPAMKNLHSALVTLGLDGKIKVSSAHASSVLASSYPPSAGAFDAASITVLRPMLQFLADTGAPFMVNTYPFISYVNDPANVQLGYALFAAGAPAVTDGALVYTNLFDATLDALVAALEKEGF---GAMPVAVTETGWPTAGHPAATPQNAAAYNAKIVERAARGAGTPRRPSLPVEVFLFDLYDEDGKPGAEFERHFGIFRAEGSK 344
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A6G1EHW0_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EHW0_9ORYZ)

HSP 1 Score: 143 bits (361), Expect = 2.150e-34
Identity = 90/227 (39.65%), Postives = 132/227 (58.15%), Query Frame = 1 
Query:  526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGP-DPGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAA--AASVNGTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            +LAVGNE L  +  + +   LVP +  +HAALV   L  ++K+ +    SVL +SYPPSAG      + V+R ++R L   G+PF +N +PF +      +    + LFG  +P   D    Y N+F A  DA+V+AL + G  G   + + VTETGWP+A  + A   +A +Y A      A   GTPLRPG  ++V+LF+LYDE  K GA+FE+HFG+F  +G++
Sbjct:  133 YLAVGNEVL--YNNQFYAPHLVPAMHNLHAALVALGLDGKIKVSSAHASSVLAASYPPSAGAFDATSLAVLRPMLRFLADTGAPFMVNTYPFISYVNDPVNVQLGYALFGAGEPVVSDGALVYTNLFDATVDALVAALEREGFGG---VPIAVTETGWPTAGHQAATPQNAAAYNAKMVERVARGAGTPLRPGVPVEVFLFDLYDEDGKPGAEFERHFGIFRSDGSK 354
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A1E5V486_9POAL (Putative glucan endo-1,3-beta-glucosidase BG1 n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5V486_9POAL)

HSP 1 Score: 143 bits (360), Expect = 2.250e-34
Identity = 94/227 (41.41%), Postives = 130/227 (57.27%), Query Frame = 1 
Query:  529 LAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPDPGYLDCGK-RYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSY---IAGAAAASVNGTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            LAVGNE L  +    +   LVP +  +HAAL    L  RVK+ +    SVL +SYPPSAG    A + V+R ++R L   G+PF +N +PF +      +    + LFG     +  G   Y N+F A  DA+V+AL K G  G   + V VTETGWP+A    A   +A +Y   I G AA  V GTP RPG  ++V+LF++YDE  K GA+FE+HFG+F  +G++
Sbjct:  121 LAVGNEVL--YGDTFYAPHLVPAMMNLHAALAAMGLEGRVKVSSAHSSSVLAASYPPSAGAFGPAALPVLRPMLRFLADTGAPFMLNTYPFISYVNDPANVPLAYALFGAGAAPVQDGALAYTNLFDATVDALVAALEKEGFGG---VPVAVTETGWPTAGHPAATPQNAAAYNAEIVGRAARGV-GTPRRPGVPVEVFLFDMYDEDGKPGAEFERHFGIFRADGSK 341
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A6P6V3D1_COFAR (glucan endo-1,3-beta-glucosidase-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6V3D1_COFAR)

HSP 1 Score: 142 bits (358), Expect = 4.080e-34
Identity = 111/337 (32.94%), Postives = 172/337 (51.04%), Query Frame = 1 
Query:  220 VPALVGVSIGDLFSPSPWPPEKVEEALSQAKASGYFACDAVKFWHCDAERILPTACQDHIRKVIVHANNDEMLTVDNWE-----HWINRHLRPIVR--RIRRCKVFKEIFLAVGNESL--SPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEG----SRDFLLFGPDPGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVN--GTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            V A VGV  G +    P PP  V + L     S       V+ ++ DAE + P +  +   ++++   N+ + T+ N        W+  ++   V   ++R        +LAVGNE L   P+    +   LVP +R++H AL    LAD +KL +    +VL +SYPPSAG      + V+  +++ L   GSP  +N++PFF+        S D+ LF     + D    Y+NMF A  DA   A+ + G  G   + +VVTETGWP+A    A+  +A +Y    A   +N  GTP RPG  ++V+LF+L+DE  K G +FE+HFG+F + G +
Sbjct:   27 VGAPVGVCYGRVAINLP-PPSDVVDLLRSNGIS------RVRLFNADAEALKPFSGTEI--QLMIGVPNEVLPTLANGMVSTALDWLQSNIFAYVSPSQVR--------YLAVGNEVLLKDPF----YSPFLVPAIRKLHQALQALGLADTIKLSSAHAATVLSNSYPPSAGAFDPNLLSVLTPLLQFLRDTGSPLMVNVYPFFSYINNMQSVSLDYALFRSSAVHADQKLAYDNMFDATIDAFAYAMEREGFQG---IPIVVTETGWPTAGGAAANIENALAYNGNVARRGLNNIGTPKRPGVGVEVFLFDLFDEDQKGGEEFERHFGIFRVNGVK 339
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A2P5AHC3_PARAD (Glucan endo-1,3-beta-D-glucosidase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5AHC3_PARAD)

HSP 1 Score: 142 bits (358), Expect = 4.830e-34
Identity = 89/231 (38.53%), Postives = 129/231 (55.84%), Query Frame = 1 
Query:  526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFA-----RGEGSRDFLLFGPDPGYL----DCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVN--GTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            ++AVGNE      +  +   LVP +  +H AL    LAD +KL +P   SVL SSYPPS+     +    +  ++R L   GSPF +N++P+F+      GE S  + LFG +P       D    Y+N+F A  DA+V A+ K G  G   + V VTETGWP++    A   +A +Y       +V   GTP RPG  ++VYLF+L+DE+ K G +FEKHFG+F ++G +
Sbjct:  121 YVAVGNEIFLKDSLF-YAPHLVPAILSLHQALQTLGLADSIKLSSPQAASVLSSSYPPSSASFDPSLRFAMVPLLRFLAETGSPFMVNLYPYFSYINSKAGEVSLSYALFGYEPDRAVTVRDGAFEYSNVFDASVDALVYAMEKEGFGG---VAVAVTETGWPTSGGPAAGPENAAAYNGNVVRRAVADAGTPRRPGVGVEVYLFDLFDENGKQGEEFEKHFGIFGLDGVK 347
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A067GUN7_CITSI (Glucan endo-1,3-beta-D-glucosidase (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GUN7_CITSI)

HSP 1 Score: 139 bits (350), Expect = 9.420e-34
Identity = 88/228 (38.60%), Postives = 131/228 (57.46%), Query Frame = 1 
Query:  526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSR----DFLLFGPDPGYLDCGK-RYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSY---IAGAAAASVNGTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182
            +LAVGNE LS  +   +   +VP +  ++ AL    LA+ VKL +P   SVL +SYPPS+G      V  +  ++R L    SPF +N++P+ +    S     D+ LF  D   L  G   Y N+F A  DA + A+ K G +G   + +VVTETGWP++    A   +A +Y   +   A A V GTP RPG+ ++VYLF+L+DE  K G ++EKHFG+F ++G++
Sbjct:   44 YLAVGNEVLS--KDPYYSPFVVPAMTNLYQALQTLNLANSVKLSSPQAASVLSASYPPSSGTFDPYIVSNIVPLLRFLNDTNSPFMVNVYPYLSYTSSSEYISLDYALFRSDKAVLQDGALAYGNLFYASIDAFIYAMEKQGFVG---VPLVVTETGWPTSGGAEASVENALAYNENVVRRALAGV-GTPKRPGQGVEVYLFDLFDEDGKSGEEYEKHFGIFGLDGSK 265
[Close]
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: B8LRW3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LRW3_PICSI)

HSP 1 Score: 142 bits (358), Expect = 1.320e-33
Identity = 95/255 (37.25%), Postives = 138/255 (54.12%), Query Frame = 1 
Query:  460 WINRHLRPIVRRIRRCKVFKEIFLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFAR----GEGSRDFLLFGPDPGYLDCGK--RYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVN---------GTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLFDIEG 1176
            W+N ++R  +         K I +AVGNE  +    +   A LVP ++ +H+ALV       +++ TP  ++VL +SYPPSAG        +++ ++  L +IGSPF INI+P+FA      + S D++LF P+ G +D     RYNNM  A  DAV SALS LG      ++V V+ETGWPS    M D   A + +  A   + N         GTPLRP   +  YLF L++E +K G   E++FGLF  +G
Sbjct:  109 WVNENIRTYL------PATKIIGIAVGNEVYTGTDTQLM-ANLVPAMKNIHSALVSIGADMNIQITTPHSLAVLGNSYPPSAGSFVSDLNSLMKPLLDFLSQIGSPFFINIYPYFAYKSNPSQVSLDYVLFQPNAGVIDPNNNIRYNNMLYAQVDAVYSALSALGYAN---LEVTVSETGWPS----MGDASEAGATLQNAQTYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKTGPTSERNFGLFKPDG 349
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW7_ECTSI1.200e-14764.92Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectoc... [more]
A0A5K1GLM5_9MAGN3.430e-3742.98Uncharacterized protein (Fragment) n=4 Tax=Nymphae... [more]
Q0J034_ORYSJ7.310e-3741.41Os09g0533200 protein n=10 Tax=Oryza TaxID=4527 Rep... [more]
A0A8J5VKG8_ZIZPA6.670e-3540.53Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A6G1EHW0_9ORYZ2.150e-3439.65Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
A0A1E5V486_9POAL2.250e-3441.41Putative glucan endo-1,3-beta-glucosidase BG1 n=1 ... [more]
A0A6P6V3D1_COFAR4.080e-3432.94glucan endo-1,3-beta-glucosidase-like n=4 Tax=Coff... [more]
A0A2P5AHC3_PARAD4.830e-3438.53Glucan endo-1,3-beta-D-glucosidase n=2 Tax=Cannaba... [more]
A0A067GUN7_CITSI9.420e-3438.60Glucan endo-1,3-beta-D-glucosidase (Fragment) n=1 ... [more]
B8LRW3_PICSI1.320e-3337.25Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig997contigA-nodosum_M_contig997:24815..32960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog15368.BRADI2G23940.1
PFAMsGlyco_hydro_17
Model size1713
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0001871,GO:0003674,GO:0003824,GO:0004553,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0016020,GO:0016787,GO:0016798,GO:0030246,GO:0030247,GO:0031224,GO:0031225,GO:0031226,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046658,GO:0071944
Exons4
Evalue5.03e-21
EggNOG OGs2CMDJ@1|root,2QQ1M@2759|Eukaryota,37IAZ@33090|Viridiplantae,3GFFX@35493|Streptophyta,3KWNX@4447|Liliopsida,3IBH1@38820|Poales
DescriptionBelongs to the glycosyl hydrolase 17 family
Cds size468
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig997.3.1prot_A-nodosum_M_contig997.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig997 31031..31498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870542.5595067-UTR-A-nodosum_M_contig997:24814..250431680870542.5595067-UTR-A-nodosum_M_contig997:24814..25043Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig997 24815..25043 +
1680870542.5712576-UTR-A-nodosum_M_contig997:25993..261691680870542.5712576-UTR-A-nodosum_M_contig997:25993..26169Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig997 25994..26169 +
1680870542.6427956-UTR-A-nodosum_M_contig997:31003..310301680870542.6427956-UTR-A-nodosum_M_contig997:31003..31030Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig997 31004..31030 +
1680870542.6687465-UTR-A-nodosum_M_contig997:31498..315891680870542.6687465-UTR-A-nodosum_M_contig997:31498..31589Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig997 31499..31589 +
1680870542.6801767-UTR-A-nodosum_M_contig997:32238..329601680870542.6801767-UTR-A-nodosum_M_contig997:32238..32960Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig997 32239..32960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870542.6540277-CDS-A-nodosum_M_contig997:31030..314981680870542.6540277-CDS-A-nodosum_M_contig997:31030..31498Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig997 31031..31498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig997.3.1

>prot_A-nodosum_M_contig997.3.1 ID=prot_A-nodosum_M_contig997.3.1|Name=mRNA_A-nodosum_M_contig997.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=156bp
MLTVDNWEHWINRHLRPIVRRIRRCKVFKEIFLAVGNESLSPWQVERFGA
RLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVD
VVRDVVRLLVRIGSPFCINIHPFFARGEGSRDFLLFGPDPGYLDCGKRYN
NMFSA*
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mRNA from alignment at A-nodosum_M_contig997:24815..32960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig997.3.1 ID=mRNA_A-nodosum_M_contig997.3.1|Name=mRNA_A-nodosum_M_contig997.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8146bp|location=Sequence derived from alignment at A-nodosum_M_contig997:24815..32960+ (Ascophyllum nodosum dioecious)
GCTAGGTTAAGGCGCCTCGAGGCGAACTCTGCCCTCTTGATCTTCGCTCT
ACTCTTGGCTCTTCTCTCAAGCTGGGGCTCGTCCACAATCCGGGCCTCTC
GTACGTTCATCGGTGGAGCTCGGACAGTCCCGGTCCCCGTGTGACCCCCG
TGGGTCGCCCCGGTCCGCGTGTACTTCCATCCTAGGTCGCCCGGGCTTCC
GTATACCCACAGCAGGGTCGTCCCGGCACGTGCGTCTCCCGCAAGGTCGC
CCCTTGTCACTGTTCCGGACCGTTCTAAGGGGTTGTACCCTCAGTACAGT
GGAGAGTATTACTCGTAGGGGTCTTTCATGCATGTTTCAGTACACGGTGG
TATGGTACAACTTATTATACAGGTATTACTGCATTAGTGTGAAGATAGAA
AAATTTTCAGCTATTAATAGGATGAACACAAATTTTGTTTCTGACGCAAT
AATGTTAGTTAAGAAAAAATTGTTCTATCCCTCCGTGCCCCTGCTGGTTG
GAATTATTATAATAGGCTTATTTAGATGCTGCGTTCATATTTTTTAATTA
TGTACTTTTTTAATACTTGTTGGTGATTTAGATTTTTTGTACCGAATTCT
TAAATCGTAAGTAGAGTACCGCAAGATAAGAAAGGAAGTAATAATACTAT
GTTTTATTTGAAACTATCTTGGTGCTGTGTGATGTATGACATAATATGAA
TTCATTGATTGACACAAAGCAGCAGCAGCAGCAGCAGGAGATCAAGTCCC
CCAAAACACGATTGATTATCGTCATGGTACACACACACACGCTTGGGAGG
ATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGCG
GTTATTTATGTGCAATTTAATAAATACACACACACACACACACGCACATA
CACAAAAATAAAAATAAAAATAAAAAAACATACCAGGGAGGTACTCTCTC
GACGTAGTAGGCAGCTTCTTCAGAAGGGGTTTGAAGCTCCGCATACCTTC
CTCAATATTGATATATACCTGGCATATGGCAAATTGATCATTCGTTTTCA
GGCGAGGTGAATCGTTTATCACATTGTTGAAGTATGCAGTGCTTCAACGC
ACAACATTTAACGTGCACAAAAAAACAACAGCAGCAGCAGCAGCAGCAAG
CAACAGGGAGCAAGCATCAGCCCTCAAAATGGTGGGGGTCAGCATCGGCG
ATCTCTTCAGTCCTTCACCGTGGCCGCCGGAGAAGGTCGAAGAAGCCTTG
TCGCAGGCCAAGGCTTCCGGATACTTTGCCTGCGATGCGGTGAAATTCTG
GCACTGCGACGCCGAGCGCATCTTGCCCACCGCCTGCCAGGACCACATCC
GAAAGGTGCGCTATGAATATTCATTGATATATTAAAAAGCAGTTTTCTAT
GTACATAATATTATGTACTTCGTATTATGTATATATGCATGGTCATCACA
TGTAGCAGAGTATAGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGT
CAGCTGAACAGGGAAAATGAATATTCCCCTGTCCCCGTACGCGCCTGAAA
ATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCT
CATTCTCCATACTCAGGCTGAATCTGGTGCTTACTCACGGGGTTCCTCCG
GATTTCCGCGCGGCGTCCATTTATTTATTGAAACTGCCATACGCCATCGG
GTCAGTCCCAAGTTAATCGGGTCACGCAATTGCGTACCGCTGGCGTTCAC
TGCCGCCTAGAGTCCGCCGGCGCAGGGCCAGTAGGTAGTCCTCAAGTTGG
TTCCAGTAACGTGAACGGGTGCTGCCATTTTGCAGGTGACCATGGACCAA
TTAATGTGTGTGTGTATGTGTATGTGTGTGTGTGTGTGTGTGTTTTCTTC
CCATATATTCTGGACGTCAGGTTTGTTGGACGTACCAGCCAGAGTCACAC
AGGATTTCTCATCCACCTTGAAGGCTTCCTTCTGTGGTGCTTGCCTTGAT
TTTGTTCGCGAGAAGGATTCAGCCGTTCCTTTCCATTGTCGACCATGAAG
TCGAGTTTTGTGTACGGACGTTTCAATCGTTCTCCACTTGTTGGGCATTT
TTATTTTTGTTTGTTATTTCTTAGTGAGGAAAAATCTCAGTTACCGGGAT
TCGAACTCGCGTCCCAACGTGTCAGAAGGTTACGAGGTTACCAACTGAGC
TACCGGGGCGACCGGCCTTATTGATGTGCGCCTCCCTTTTCCCACACCCA
CTATTGGTATGAAGTGGGCATGTTGAAATTATAGGCAGGCGTCTTGCCCA
CCGCCTGCCAGGACCACATCCGAAAGATGCGCTGTGAATATTGATATATT
AAAAGCAGATTTCTATGCATGTATGTATTATGTTGTTGTTGTCGTTTCTC
ACATTCAGCGCATTGGTTGCCAACCCGAAAAATACTACTTTACACGGTGG
CCAATCCCGCTCGTGATCTGCTGAACAGGGAAAAAAAAAAAAAAAAGTCT
GGCAGCGCCCCCCCCTTCCCCCGCGCGCTGCTCGTTCGGAGAAAATAAAG
TATGTATGTATGTATGTATGTATGTGTGGTCACACACGTATAGCAAGAGA
AGGCTCAGCCGGGTAAGGCTACTGCCTATCCTTCTCATGGTCAGCTGAAC
AGGGAAAATTCATTTTCCCTGTCCGCGTTCGCGCCTGAGAACTTGGTCTC
GCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATTTTCCAT
ACTCAGGCCGAATCTGGTGCTTACTTACTGGATTCTTCTCGAGTTCCTCG
GCGGCGTCCATTTATTTATGTAAAAACCGCCATACGCCATCGGGTCAGTC
CAGAGTTTATCGGAGCACGCAATTGCGTACCGAGGGCGTTCACTGCTGAG
AGTCCGCCGGCACAGGTCCAGTAAACCACAAGATAGTTCCGAACGAGTGC
TGCCCTGCCAGGTCACCATGGACCAATTAATATGCGTCTGTCTTTCCTTC
GCAGCCGTACTGACTGTTGTTCTCCAGAGATTCAGTGAGGAACCGGCCAT
CCTCGCCGAGCTGGTGCACCTGAAGGAACTGCCGACGTCGATGGGACCGG
AGTCGGCTATGGACTACGTTCGTCGTGCGGTGTGGGGCATGCTGTACGTG
GATGACGCCTGCATAGTTTCGCGATCGCCGCGGGGGCTCGCTAAGATGAT
GGAAGTCATCGTAGAGGTGTGCCGAGCCTTCGCGTTGACCGTGTCGGCGA
AGAAGACAGAGACCATGTGCATGCCTCCACCGCGTACACCGCGGACGATG
GTGCAAATCGAAGCTGCCGGGCAAACGTACAAACAGGTGCAATCCTTCAC
CTACCTAGGGGGCGCCGTGACCGAAGTCCCGGACATGTCCATTGAAATCG
CCAGATGAACCCGCGTATGCTGGATGCGCATCAGGCGGTACCTACGGGAG
CTCTACGACCAACCGAAAGTCGCGCTCTCCCTCAAGACCCGAATGGTTAA
GGCGGAGGCAATCGAGGCCCTCTTGTATGGATGCAGTACGTGGACCCTTC
GCCAGGAACACTACGCCAAACTCCGCACCGTACACCACCGAGTCTTGCTT
CGTATCATCGGGGCACAGCGCAAGAGACCAGACCATCGGATGACTTCGTA
CAACCGTGCCCTTGAGATAACCGGGTGTGAAAGCATTGAGACGACGTTGC
GAACGAGAAGACTTTTGTGGGCGGGGACGCTCCTGCGAATGAGCGGCGGG
CGGCTGCCGAAGCGAATCGTTTTCGGAAACCTTGAGGGTGCAGTACGGGG
AGGACAGGGTGGGAAGGAGAAAGAGTGGACCGATTGCGTCCTGGGCGACA
TCCGGGCGTTTGGCATAGCGGGGGACTGGAAAGCGACGGCTTCAGAGGCT
GCGGTGTGGGTTGAGACGGTCTCGGAGGGTGGGCGGAGGTTCATGGCCGC
GTGGAGGAAAGAAGAGGTAGACGCGGCTAGACATCGCCAGGAGAAGAGAG
AAGCAACGAGACTGGGAAACTTATTATCGCAGACGGGAGTGTAGAATTTT
GCGAAGCCACACCTATTGGCCTAGAGCTCTAGTCGACGAGCCGAAGGTAT
CCTTGTACGGACGCGAGACCGACCAAGACTTTAGTAGCGCCTGTAGATGC
GTCGCGTGATTTTATTTTATTTATTTTCTCCGAATGAGCAGTGTGGGGGG
TGGGGGGGGGGGGGTATGCTGCCAGACTTTTTATGTTGTTCTCTTTTCCC
TGTTCAGCAGACCACGAGCGGGATTGACCACCGTGTAAAGTAGTTTTTTC
GGGTTGGCAACCAATACGCTGAATGTGAGAAACAACAACAACGACACCCA
CTGCTCAGAAGGTCTAGGTGCATTCAGATTTTTCTTTAAACAACAACACC
CACTATTGGTATGAAGTGGGCATGTTGAAAGTACCAGCGGGATGTGTAGT
CCATCAAATATATTATAGTACAGTTTCCACTACAACAGTACCGCGTACAC
TATATACAGTATTATTAGGAGAGGAAACAAGGGAAAAGTAGTGGATGATC
CTTATTGCAACCAGTATAAATAGTACCTTGTGTAAACACGTACCTGGGAC
AAATTTTAGATTTTTTTGTTGTGGTAATTATAGGTTTTAAGATTGATGCA
AGAATGACTATTAATTAATAGGGTAGTAACACGTCGCGGGTAAAAATGAT
GTAGCTTTCGTAGTATGCATGTTTGTACGATGTATGTATGTATGTATGTA
TGGTCATCACATATAATGTCAGTGTATGGATCAACCGGGTAACTAAGGTT
GCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGGGCATTACTCTGT
CCCCGTTCGCGCCTGAGAATTTGGTCTCGCTAGACGGGTCCGACGGGACG
GGTCCGACCGTCCCGTCCCGCGTCAACCTGCTCATTCTCCATACTCGGGC
TGAATCTGGTGCTTACTCATAATCAACCGTAAACGAGTGTGCATACTCTT
GTTAACAATATTAAATTACTGAAAAGAGCGTTTTCGGTGTGCCGTTGTTC
TTTGTTACCCAATTGTCTTGAGCGTTCTCGAGCTATTCCTACTGCAGTAC
AAAGCAAAGCTTCAGTAACAGTAGTAGCAACTCCTGGAAGCGTACTGTAC
CATCGACGTTTCTAGAGAGTGTGGTTTTGACTCTCAAAGAAATCTTTCAT
TTCAATTTCGAGGCTGTCGATGCAGCGCACAGCTATTTGGGGGGGGGGGG
TTTAGAAGGGTTTGGGGATATTTTTTTCTGGTATCTGGTGACAGACACTA
CGGGGCAGCGTCATCAGTATAATAATATTGCAACAGCGTTAAGAGTAAGA
TTATTGATGCTTGGCACCATTCTTGCTGCGTGCGGGATGCCTTTTGGCGT
AGACGCATCGGCTGAGCTCCAATGATGATTGAAAAACGCGAGGGTGTTTG
ACTCTCTTAGAAGTAATACATTGTCTCTCAAGGTACAAATGACACGTACC
AGGTACGATAATGTAGCTCAAACCCCCCTTACCCTTGCAGCACCGTCACC
ACCACCGGCAACATACATCAGTCCTCAACGTCCAAACAACCACGAAAGAT
CCGCGAAATAAAGGGAATACGGTCCCTGTTGAGGAACTCCATACCTCATT
CCTAAGAGTCGAGATGCAACGTGCAGTATATGGAGATTGCAAATACCGTA
AGCATCGGAGTCTTGGTACACCCCCTAGACTGACTTTCCAGGCTCGATTG
CTCCACAACCAAGAGAATGTGAACACGGACCGATACGTCTAAAGAAAGCT
CTCGACGAGATGTTTCGAAAACTGCCCTTTTCGGCATTGGCACGCTCTTG
GTTGTGGAGCAATCGAGCCTGGAAAGTCAGTTTAGAGGGTGTGCCAAGAC
TCCGATGCCTACGGTATCCATGTTCCTCCCGGCACACAATTGAGTCGCAC
TGACGAACTGAGCTGTGTACCAGGAAGGAACACGTACGTAGTCCTCCTGA
TTCATTTTCCTTGCTATACGAACGCGCGGTGGGAATTTGGATGGTAAGAT
GTAAGAGCTTTGCATTTTTTTGGGGGAGGGCAGGGGGGGGGGGGGGGGAT
AAACATGGAAGATATTTTTTTCAAAAAGACCCGGGCATCCTACGAATCCC
GAATCCCCTATTACTGCCGACGCTTCTCGCGGCGACCAGGTGATAGTCCA
CGCCAACAACGACGAGATGCTGACGGTCGACAACTGGGAGCACTGGATCA
ACCGCCACCTCCGGCCGATCGTTCGTAGAATCCGCCGATGCAAGGTGTTC
AAAGAGATTTTTCTAGCCGTTGGGAACGAGTCCCTGTCCCCATGGCAAGT
CGAACGCTTTGGCGCCAGGCTGGTGCCGTGCCTCCGCGAAGTTCACGCCG
CTCTCGTAGAGACCCGTCTCGCCGACAGAGTCAAGCTCGTGACACCGCTA
GGGATGTCCGTCCTGTGCTCCTCCTACCCGCCGAGCGCGGGGCAGATTTC
CGAGGCGTACGTGGACGTGGTGAGGGACGTGGTGCGCCTGCTCGTGAGGA
TCGGTTCGCCCTTCTGCATCAATATCCACCCGTTCTTCGCTCGGGGCGAG
GGGTCCCGAGATTTCCTTCTGTTCGGCCCCGACCCCGGGTACTTGGACTG
CGGGAAGAGGTACAACAACATGTTCTCGGCCTAGTACGACGCGGTAGTCT
CGGCGCTTTCGAAGCTTGGCGTCTTAGGGGCGGATGCTATGGATGTGGTC
GTGACAGAGACGGGTTGGCCATCTGGTGAGCGAGCAGTGTCCTGTAAAGC
AGGGCGATGAAGTATATAATATACATACACACACACACACAGGGGCATTC
CATCGTTCCTGTTTGTGGCTTAGTCGGGAGGAGCAGTCATTCCGTGTTAA
CCCCCGACAACAGTCAACGACATAGCTAGCGTTGTCACTAATAGTCGTTG
ACGAGATCTTTCCGGCGCCGAAAGGTCTGACAAGATAGAGATCTACAGTA
GAGCACAAGTCAATGGTCAAGAGGAAAGGGTCGCGCGATCCTTTCCCAGA
AGTGGGCTTTGGTGCTTGTAATCGTCCCCCGACCGCAAGTGTGCCTGGTG
CATCACCCCTTCCTATCGTGATATAAAACAAGGGGTTCCAGTCCGGCGCA
TGCTAAATGCTTGACGCATATTTATGAGTTGTGGAGGTTCGTCGGCCCAT
GTAATAAGTAGACAGTCTGGTCTACGGTGGATACCTTCTGAGGTTACCTC
ACCCATGACGGTACAGCTCTCTCTCTCATCGTGGCGTTTCAATGAGGATG
AGAATCGGGAAGCAAGGAGATCATCGCTCGACAAACCCCCATCACCCACC
CCCGCTCTCAAAAAAACGCCCCCCCATGTAGGCTTCCTCGAGACTCTCTT
CCGCCCTTTCTTCCGCCCCCACAGCCAGTGCAGAGATGGCGGATGGGCCG
AGCGCGAGGAGTTACATCGCGGGCGCCGCCGCCGCAAGCGTGAATGGGAC
GCCTCTCCGGCCGGGGCGCATGGACGTCTACCTCTTCGAGCTGTACGACG
AAAGTCTGAAGCACGGCGCCGATTTCGAGAAGCACTTTGGCCTCTTCGAC
ATTGAGGGAGCTCAGAAGGGATAAATGTTTTTCTTTTATTTCGTCCGCAC
TCACGGCAGTGCCACTCGTTTTATCTACTTTTCTCCTTCGCTTTATTTTG
TTCTTTGGGTGCGAAGTGAGCGTGTTCATCCAATGTTTTGATTATTTTGA
TGAATTTGGAGTCTTTCGCCAATCAACTTCGATGCCGCGGCGGGCTTGTT
GCTTGCTCTGGTGCGTGGCATTTGTTGCCGAAGATTTGCTGGATATCAAA
ATCGTTGCGCGTAGCCACGTTCATGCCTGGGACGTCGACCTTTGTTGGGC
ACCATTATTGCTTTTTTATTTTCATAACGTTTTCACACATCCCGTGCTAG
ATTTTATTTAATATATGCAAAATGACATATTTTGGAGAGGGGAGGGGGCG
GCAGCTCGATTATGATATATATACACTTTTGTGGCGGTAACCGCTTGCTG
GTTTGTTGGCGTGCTATGAATCTATTTTCCACAAAAGCTTGAGGCGTTGT
AAGCAGGGCGGCCAGCCTATCGCTTTGAAAATATTTGAGAAAAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig997:24815..32960+

>mRNA_A-nodosum_M_contig997.3.1 ID=mRNA_A-nodosum_M_contig997.3.1|Name=mRNA_A-nodosum_M_contig997.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at A-nodosum_M_contig997:24815..32960+ (Ascophyllum nodosum dioecious)
ATGCTGACGGTCGACAACTGGGAGCACTGGATCAACCGCCACCTCCGGCC
GATCGTTCGTAGAATCCGCCGATGCAAGGTGTTCAAAGAGATTTTTCTAG
CCGTTGGGAACGAGTCCCTGTCCCCATGGCAAGTCGAACGCTTTGGCGCC
AGGCTGGTGCCGTGCCTCCGCGAAGTTCACGCCGCTCTCGTAGAGACCCG
TCTCGCCGACAGAGTCAAGCTCGTGACACCGCTAGGGATGTCCGTCCTGT
GCTCCTCCTACCCGCCGAGCGCGGGGCAGATTTCCGAGGCGTACGTGGAC
GTGGTGAGGGACGTGGTGCGCCTGCTCGTGAGGATCGGTTCGCCCTTCTG
CATCAATATCCACCCGTTCTTCGCTCGGGGCGAGGGGTCCCGAGATTTCC
TTCTGTTCGGCCCCGACCCCGGGTACTTGGACTGCGGGAAGAGGTACAAC
AACATGTTCTCGGCCTAG
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