mRNA_A-nodosum_M_contig997.3.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: D8LDW7_ECTSI (Endo-1,3-beta-glucanase, family GH17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW7_ECTSI) HSP 1 Score: 437 bits (1123), Expect = 1.200e-147 Identity = 211/325 (64.92%), Postives = 263/325 (80.92%), Query Frame = 1 Query: 229 LVGVSIGDLFSPSPWPPEKVEEALSQAKASGYFACDAVKFWHCDAERILPTACQDHIRKVIVHANNDEMLTVDNWEHWINRHLRPIVRRIRRCKVFKEIFLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRDFLLFGPDPGYLDCGK----RYNNMFSA*YDAVVSALSKLG--VLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVNGTPLRPGRMDVYLFELYDESLKHGADFEKHFGLFDIEGAQK 1185 +VGV+IGD +P+PW PEK+E+AL+QA++SGYF+CDAVKFWHCDA R+LPTA QDHIRKV+VHANN EML+V +W W+ HL P+V +R +V KEIFLAVGNE+L+PW VE FG RLVPC++EV+ AL++T L+DRVKLVTPL MS+L +SYPPSAGQ++EA+++VV +VVR LVRIGSPFCIN++PFFAR SRDF+LFGPD GY D G+ RY NMF+A +DAVV+ +SKL ++GAD +++VVTE GWP+A + MAD SAR + AGA AS GTPLRPGR+DVYLFELYDE + GA EKHFGLFDI G K Sbjct: 1 MVGVNIGDTLTPTPWAPEKIEQALAQARSSGYFSCDAVKFWHCDASRVLPTAQQDHIRKVMVHANNHEMLSVSDWRAWVETHLSPVVGGLRGQRVHKEIFLAVGNEALAPWHVEMFGRRLVPCMKEVYTALLQTGLSDRVKLVTPLEMSILGASYPPSAGQVAEAHLEVVSEVVRFLVRIGSPFCINVYPFFAREHASRDFVLFGPDEGYTD-GEGGCLRYTNMFNAQFDAVVTGISKLKDCIVGADQLEMVVTEVGWPTAGSGMADKESARRFTAGATLASTKGTPLRPGRLDVYLFELYDECQQDGAAHEKHFGLFDIGGCPK 324
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A5K1GLM5_9MAGN (Uncharacterized protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GLM5_9MAGN) HSP 1 Score: 150 bits (379), Expect = 3.430e-37 Identity = 98/228 (42.98%), Postives = 133/228 (58.33%), Query Frame = 1 Query: 523 IFLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAY--VDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPDPGYLDCGKR--YNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPS---ARSYIAGAAA--ASVNGTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLF 1164 + ++VGNE LS + + LVP ++ +HAAL+E LAD++K+ T M+VL S PPS G Y VDV++ +V L + GSP IN +P+FA G R F LF + G D + Y NMF A DAV SAL+ LG +D+VV ETGWP GPS A++Y G A S++GTPLRPG+ +D Y+F L+DE LK GA E++FGL+ Sbjct: 91 VLVSVGNEVLS-YGDGNMVSHLVPAMQNLHAALLEVSLADKIKVTTVHSMAVLQQSDPPSTGAFRPTYAGVDVMKQLVAFLQQTGSPLAINPYPYFAYGSDPRPETLAFCLFQQNQGRFDPNTKITYYNMFDAQVDAVHSALASLGFKD---VDIVVAETGWPYQGGATEVGPSVENAKAYNGGLVAHLRSMSGTPLRPGKPVDTYIFALFDEDLKGGATSERYFGLY 314
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: Q0J034_ORYSJ (Os09g0533200 protein n=10 Tax=Oryza TaxID=4527 RepID=Q0J034_ORYSJ) HSP 1 Score: 150 bits (378), Expect = 7.310e-37 Identity = 94/227 (41.41%), Postives = 131/227 (57.71%), Query Frame = 1 Query: 526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPD-PGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAA--AASVNGTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 +LAVGNE L + + + LVP + +HAALV L D+VK+ + SVL SSYPPSAG A +DV+R ++R L G+PF +N +PF + + + LFG P D Y NMF A DA+ +AL + G A+ + VTETGWP+A A +A +Y A A GTP RPG ++V+LF+LYDE K GA+FE+HFG+F +G++ Sbjct: 122 YLAVGNEVL--YNNQFYAPHLVPAMHNLHAALVSLGLGDKVKVSSAHASSVLASSYPPSAGAFDAASLDVLRPMLRFLADTGAPFMVNTYPFISYVNDPVNVQLGYALFGAGAPAVSDGALVYTNMFDATVDALAAALDREGF---GAVPIAVTETGWPTAGHPAATPQNAAAYNAKIVERVARGAGTPRRPGVPVEVFLFDLYDEDGKPGAEFERHFGIFRADGSK 343
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A8J5VKG8_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VKG8_ZIZPA) HSP 1 Score: 144 bits (364), Expect = 6.670e-35 Identity = 92/227 (40.53%), Postives = 130/227 (57.27%), Query Frame = 1 Query: 526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPD-PGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAA--AASVNGTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 +LAVGNE L + + + LVP ++ +H+ALV L ++K+ + SVL SSYPPSAG A + V+R +++ L G+PF +N +PF + + + LF P D Y N+F A DA+V+AL K G AM V VTETGWP+A A +A +Y A AA GTP RP ++V+LF+LYDE K GA+FE+HFG+F EG++ Sbjct: 123 YLAVGNEVL--YNNQFYAPHLVPAMKNLHSALVTLGLDGKIKVSSAHASSVLASSYPPSAGAFDAASITVLRPMLQFLADTGAPFMVNTYPFISYVNDPANVQLGYALFAAGAPAVTDGALVYTNLFDATLDALVAALEKEGF---GAMPVAVTETGWPTAGHPAATPQNAAAYNAKIVERAARGAGTPRRPSLPVEVFLFDLYDEDGKPGAEFERHFGIFRAEGSK 344
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A6G1EHW0_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EHW0_9ORYZ) HSP 1 Score: 143 bits (361), Expect = 2.150e-34 Identity = 90/227 (39.65%), Postives = 132/227 (58.15%), Query Frame = 1 Query: 526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGP-DPGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAA--AASVNGTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 +LAVGNE L + + + LVP + +HAALV L ++K+ + SVL +SYPPSAG + V+R ++R L G+PF +N +PF + + + LFG +P D Y N+F A DA+V+AL + G G + + VTETGWP+A + A +A +Y A A GTPLRPG ++V+LF+LYDE K GA+FE+HFG+F +G++ Sbjct: 133 YLAVGNEVL--YNNQFYAPHLVPAMHNLHAALVALGLDGKIKVSSAHASSVLAASYPPSAGAFDATSLAVLRPMLRFLADTGAPFMVNTYPFISYVNDPVNVQLGYALFGAGEPVVSDGALVYTNLFDATVDALVAALEREGFGG---VPIAVTETGWPTAGHQAATPQNAAAYNAKMVERVARGAGTPLRPGVPVEVFLFDLYDEDGKPGAEFERHFGIFRSDGSK 354
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A1E5V486_9POAL (Putative glucan endo-1,3-beta-glucosidase BG1 n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5V486_9POAL) HSP 1 Score: 143 bits (360), Expect = 2.250e-34 Identity = 94/227 (41.41%), Postives = 130/227 (57.27%), Query Frame = 1 Query: 529 LAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSRD----FLLFGPDPGYLDCGK-RYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSY---IAGAAAASVNGTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 LAVGNE L + + LVP + +HAAL L RVK+ + SVL +SYPPSAG A + V+R ++R L G+PF +N +PF + + + LFG + G Y N+F A DA+V+AL K G G + V VTETGWP+A A +A +Y I G AA V GTP RPG ++V+LF++YDE K GA+FE+HFG+F +G++ Sbjct: 121 LAVGNEVL--YGDTFYAPHLVPAMMNLHAALAAMGLEGRVKVSSAHSSSVLAASYPPSAGAFGPAALPVLRPMLRFLADTGAPFMLNTYPFISYVNDPANVPLAYALFGAGAAPVQDGALAYTNLFDATVDALVAALEKEGFGG---VPVAVTETGWPTAGHPAATPQNAAAYNAEIVGRAARGV-GTPRRPGVPVEVFLFDMYDEDGKPGAEFERHFGIFRADGSK 341
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A6P6V3D1_COFAR (glucan endo-1,3-beta-glucosidase-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6V3D1_COFAR) HSP 1 Score: 142 bits (358), Expect = 4.080e-34 Identity = 111/337 (32.94%), Postives = 172/337 (51.04%), Query Frame = 1 Query: 220 VPALVGVSIGDLFSPSPWPPEKVEEALSQAKASGYFACDAVKFWHCDAERILPTACQDHIRKVIVHANNDEMLTVDNWE-----HWINRHLRPIVR--RIRRCKVFKEIFLAVGNESL--SPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEG----SRDFLLFGPDPGYLDCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVN--GTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 V A VGV G + P PP V + L S V+ ++ DAE + P + + ++++ N+ + T+ N W+ ++ V ++R +LAVGNE L P+ + LVP +R++H AL LAD +KL + +VL +SYPPSAG + V+ +++ L GSP +N++PFF+ S D+ LF + D Y+NMF A DA A+ + G G + +VVTETGWP+A A+ +A +Y A +N GTP RPG ++V+LF+L+DE K G +FE+HFG+F + G + Sbjct: 27 VGAPVGVCYGRVAINLP-PPSDVVDLLRSNGIS------RVRLFNADAEALKPFSGTEI--QLMIGVPNEVLPTLANGMVSTALDWLQSNIFAYVSPSQVR--------YLAVGNEVLLKDPF----YSPFLVPAIRKLHQALQALGLADTIKLSSAHAATVLSNSYPPSAGAFDPNLLSVLTPLLQFLRDTGSPLMVNVYPFFSYINNMQSVSLDYALFRSSAVHADQKLAYDNMFDATIDAFAYAMEREGFQG---IPIVVTETGWPTAGGAAANIENALAYNGNVARRGLNNIGTPKRPGVGVEVFLFDLFDEDQKGGEEFERHFGIFRVNGVK 339
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A2P5AHC3_PARAD (Glucan endo-1,3-beta-D-glucosidase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5AHC3_PARAD) HSP 1 Score: 142 bits (358), Expect = 4.830e-34 Identity = 89/231 (38.53%), Postives = 129/231 (55.84%), Query Frame = 1 Query: 526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFA-----RGEGSRDFLLFGPDPGYL----DCGKRYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVN--GTPLRPG-RMDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 ++AVGNE + + LVP + +H AL LAD +KL +P SVL SSYPPS+ + + ++R L GSPF +N++P+F+ GE S + LFG +P D Y+N+F A DA+V A+ K G G + V VTETGWP++ A +A +Y +V GTP RPG ++VYLF+L+DE+ K G +FEKHFG+F ++G + Sbjct: 121 YVAVGNEIFLKDSLF-YAPHLVPAILSLHQALQTLGLADSIKLSSPQAASVLSSSYPPSSASFDPSLRFAMVPLLRFLAETGSPFMVNLYPYFSYINSKAGEVSLSYALFGYEPDRAVTVRDGAFEYSNVFDASVDALVYAMEKEGFGG---VAVAVTETGWPTSGGPAAGPENAAAYNGNVVRRAVADAGTPRRPGVGVEVYLFDLFDENGKQGEEFEKHFGIFGLDGVK 347
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: A0A067GUN7_CITSI (Glucan endo-1,3-beta-D-glucosidase (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GUN7_CITSI) HSP 1 Score: 139 bits (350), Expect = 9.420e-34 Identity = 88/228 (38.60%), Postives = 131/228 (57.46%), Query Frame = 1 Query: 526 FLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFARGEGSR----DFLLFGPDPGYLDCGK-RYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSY---IAGAAAASVNGTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLFDIEGAQ 1182 +LAVGNE LS + + +VP + ++ AL LA+ VKL +P SVL +SYPPS+G V + ++R L SPF +N++P+ + S D+ LF D L G Y N+F A DA + A+ K G +G + +VVTETGWP++ A +A +Y + A A V GTP RPG+ ++VYLF+L+DE K G ++EKHFG+F ++G++ Sbjct: 44 YLAVGNEVLS--KDPYYSPFVVPAMTNLYQALQTLNLANSVKLSSPQAASVLSASYPPSSGTFDPYIVSNIVPLLRFLNDTNSPFMVNVYPYLSYTSSSEYISLDYALFRSDKAVLQDGALAYGNLFYASIDAFIYAMEKQGFVG---VPLVVTETGWPTSGGAEASVENALAYNENVVRRALAGV-GTPKRPGQGVEVYLFDLFDEDGKSGEEYEKHFGIFGLDGSK 265
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Match: B8LRW3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LRW3_PICSI) HSP 1 Score: 142 bits (358), Expect = 1.320e-33 Identity = 95/255 (37.25%), Postives = 138/255 (54.12%), Query Frame = 1 Query: 460 WINRHLRPIVRRIRRCKVFKEIFLAVGNESLSPWQVERFGARLVPCLREVHAALVETRLADRVKLVTPLGMSVLCSSYPPSAGQISEAYVDVVRDVVRLLVRIGSPFCINIHPFFAR----GEGSRDFLLFGPDPGYLDCGK--RYNNMFSA*YDAVVSALSKLGVLGADAMDVVVTETGWPSASAEMADGPSARSYIAGAAAASVN---------GTPLRPGR-MDVYLFELYDESLKHGADFEKHFGLFDIEG 1176 W+N ++R + K I +AVGNE + + A LVP ++ +H+ALV +++ TP ++VL +SYPPSAG +++ ++ L +IGSPF INI+P+FA + S D++LF P+ G +D RYNNM A DAV SALS LG ++V V+ETGWPS M D A + + A + N GTPLRP + YLF L++E +K G E++FGLF +G Sbjct: 109 WVNENIRTYL------PATKIIGIAVGNEVYTGTDTQLM-ANLVPAMKNIHSALVSIGADMNIQITTPHSLAVLGNSYPPSAGSFVSDLNSLMKPLLDFLSQIGSPFFINIYPYFAYKSNPSQVSLDYVLFQPNAGVIDPNNNIRYNNMLYAQVDAVYSALSALGYAN---LEVTVSETGWPS----MGDASEAGATLQNAQTYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKTGPTSERNFGLFKPDG 349 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig997.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig997.3.1 >prot_A-nodosum_M_contig997.3.1 ID=prot_A-nodosum_M_contig997.3.1|Name=mRNA_A-nodosum_M_contig997.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=156bp MLTVDNWEHWINRHLRPIVRRIRRCKVFKEIFLAVGNESLSPWQVERFGAback to top mRNA from alignment at A-nodosum_M_contig997:24815..32960+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig997.3.1 ID=mRNA_A-nodosum_M_contig997.3.1|Name=mRNA_A-nodosum_M_contig997.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8146bp|location=Sequence derived from alignment at A-nodosum_M_contig997:24815..32960+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig997:24815..32960+ >mRNA_A-nodosum_M_contig997.3.1 ID=mRNA_A-nodosum_M_contig997.3.1|Name=mRNA_A-nodosum_M_contig997.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at A-nodosum_M_contig997:24815..32960+ (Ascophyllum nodosum dioecious)back to top |