mRNA_A-nodosum_M_contig996.48.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig996.48.1
Unique NamemRNA_A-nodosum_M_contig996.48.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig996.48.1 vs. uniprot
Match: D7G1P7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P7_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 8.380e-49
Identity = 124/256 (48.44%), Postives = 147/256 (57.42%), Query Frame = 3 
Query:  282 VVRRRLSRLGMTEQGEGFHDPYGDESQEQEPSWGRGVGAGSEGIIPVQPYREEHTAGGRKFSELLARAKGKNPARSFQ---AAPRHPVPPEGPIDYDQDSQWEDQLIGSPNLPDPPLRNEMPGLRLSPEIDYDGLEEASPGNLGSGGDGGDRFQRMMQQAQTNDQRQAAGIPPVSVQNTRPW---RADARPLLLSKEEKERALRAAVERQQNMMAKARGINLDDPTLEGTELAKKRALSRASGEGIGWLAAGDIPT 1031
            V R  L  L M + GEG    +G E  E  P+   G G  S  + P  PYREEHT GG +F ELLARA G+          A PR  +PPEG  DYD D+QWE+Q IGSP++PDPPLR  MPGL L PE+DY G  EA                        ND RQ AG+ P +   +      RA A    +SKEEKERA++AAVERQQ MMAKARGI+LDDPTLEG ELA+K+ALSRA  E     A G +P+
Sbjct:    3 VSRDTLPALSMADDGEGAL--FGPEESEGGPA---GPGGDSNPLGPPPPYREEHTPGGTRFKELLARANGQGAPXXXXXXXAKPRRALPPEGAPDYDDDNQWEEQAIGSPDVPDPPLRENMPGLDLGPELDYGGGGEAXXXXXXXX-----XXXXXXXXXXXNDDRQEAGMAPRASPRSPQEVAKRAAAAQAPVSKEEKERAIKAAVERQQKMMAKARGIDLDDPTLEGAELARKKALSRAQAEAQ---AGGYVPS 245
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig996.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1P7_ECTSI8.380e-4948.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig996contigA-nodosum_M_contig996:272166..274163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1156
Hectar predicted targeting categorysignal peptide
Exons2
Cds size963
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870541.433747-UTR-A-nodosum_M_contig996:272165..2722811680870541.433747-UTR-A-nodosum_M_contig996:272165..272281Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig996 272166..272281 -
1680870541.6573303-UTR-A-nodosum_M_contig996:274086..2741631680870541.6573303-UTR-A-nodosum_M_contig996:274086..274163Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig996 274087..274163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870541.4438434-CDS-A-nodosum_M_contig996:272281..2729651680870541.4438434-CDS-A-nodosum_M_contig996:272281..272965Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 272282..272965 -
1680870541.4539168-CDS-A-nodosum_M_contig996:273807..2740861680870541.4539168-CDS-A-nodosum_M_contig996:273807..274086Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig996 273808..274086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig996.48.1prot_A-nodosum_M_contig996.48.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig996 272282..274086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig996.48.1

>prot_A-nodosum_M_contig996.48.1 ID=prot_A-nodosum_M_contig996.48.1|Name=mRNA_A-nodosum_M_contig996.48.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=321bp
MRTVVVHANTMTRKHNRGRIILILQAWLVPCHGFRSTSCLQTSHVALRAL
QRHAPLFPHDQRLRTLSDVVRRRLSRLGMTEQGEGFHDPYGDESQEQEPS
WGRGVGAGSEGIIPVQPYREEHTAGGRKFSELLARAKGKNPARSFQAAPR
HPVPPEGPIDYDQDSQWEDQLIGSPNLPDPPLRNEMPGLRLSPEIDYDGL
EEASPGNLGSGGDGGDRFQRMMQQAQTNDQRQAAGIPPVSVQNTRPWRAD
ARPLLLSKEEKERALRAAVERQQNMMAKARGINLDDPTLEGTELAKKRAL
SRASGEGIGWLAAGDIPTPL*
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mRNA from alignment at A-nodosum_M_contig996:272166..274163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig996.48.1 ID=mRNA_A-nodosum_M_contig996.48.1|Name=mRNA_A-nodosum_M_contig996.48.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1998bp|location=Sequence derived from alignment at A-nodosum_M_contig996:272166..274163- (Ascophyllum nodosum dioecious)
GATGGGAGTTCCATTTGCGTGAACTTTTGCGGTAGAGCAGCGCCCGTATA
CAAGACGAAAAAGCCGGATGGGGCCGGATGCGGACGGTCGTAGTGCACGC
AAATACCATGACTCGTAAGCATAATCGAGGTCGAATCATCTTGATCTTGC
AGGCATGGCTCGTTCCGTGCCATGGCTTTCGCTCCACAAGCTGTCTCCAA
ACGTCACATGTGGCCCTCCGCGCCCTTCAACGCCATGCACCCTTATTTCC
TCACGACCAACGGCTTCGTACTCTCAGCGACGTCGTGCGGAGGCGACTCT
CTAGATTGGGTATGACCGAGCAGGGAGAAGGGTTCCACGATCCTTACGGA
GACGAGGTACTTCGGTTGTATGTTGGTGAGGTTGAGCGTAGCATTGTGAT
CGTCCAAGACTTCTACCACGATACATGAAACGGCAGCTTGAAGCAGCAGC
TGTAGTTGAACATGCAGAGTGGACTGCTCTGAAAATATGCCACCATATCG
GCATCACATGACGTAGTACGCTCTCCTACTTGGTGCGCAATATGAAGAGA
CAGTCTTACGCCGCCTTTTCCATCCTGGGATCGAATAGAGCCTAGACGTT
CCACGATGGTTTAAGAAAAATGCAAGGCTAGCTCTACGCTGACAGTCCCG
CCAAATCCATCCGTTCGTGAGTTTCAGCCCTTTCTATTTACATCTACGGA
GTATCAGTTACAACAAACAGGATGAGTACTCGTACATACGGATAAGACAG
TAGTAGCGGTGGGCTTCTCAACACCACACTGTCGACAACCCAGCAAACCC
TTACGTCGAGCGATCGCTCCATTATAACGGCCGTTGTACCTACTCAAACC
TTTCGACGTAAATTCTCCAAGACGTTGGAGATGCTCGTAAGGTATGGATG
CATTTTGAGTTTCATATTCTTATCAGTTTTTAGCGGTGTGTAGTGTTCAA
AGAGCTTTGCTACCGTTAAAACTCTCCCCCCCCCTGCCTATTAATAGAAC
CATTATTGAGACCATGGCTGACGGGAAAAGGCAAGCCGCGAACAGGAAAA
TTGTTATACTGTATATTCTACTTCACACGGTTGGTACTCTTTCTCAAGTT
GCTCCATTCGCAGCTCGCAACCCTGCCCAGAGTAATGCTCACCACGCTGT
CTGCCCTTGCGGTTCACCTTTTTTTTTTTTACGTCCACGCCACCGCAGAG
TCAGGAACAGGAGCCATCGTGGGGCCGCGGAGTCGGCGCTGGTAGCGAGG
GTATTATTCCCGTCCAACCCTATCGCGAGGAGCACACCGCCGGCGGGAGG
AAGTTCAGCGAATTACTTGCGCGGGCAAAAGGAAAAAACCCGGCGCGTTC
GTTTCAGGCCGCGCCTCGCCATCCTGTGCCCCCGGAAGGACCAATTGACT
ACGACCAGGATTCCCAATGGGAAGACCAGCTCATAGGTTCCCCGAACCTG
CCAGACCCGCCTCTCAGAAATGAGATGCCCGGCCTGAGACTGTCTCCAGA
GATAGATTACGACGGGCTAGAGGAGGCTAGCCCTGGAAACCTCGGCAGCG
GCGGCGACGGTGGTGACCGTTTCCAGCGGATGATGCAGCAAGCCCAAACG
AACGACCAGCGGCAAGCTGCTGGTATACCGCCGGTATCGGTTCAAAATAC
CCGTCCTTGGCGTGCCGACGCGAGGCCGTTGCTTCTGAGCAAGGAGGAGA
AGGAGAGGGCGCTAAGGGCGGCTGTGGAACGGCAGCAGAACATGATGGCC
AAGGCGCGGGGCATCAACCTGGACGACCCGACCCTGGAGGGCACGGAGCT
AGCGAAGAAGAGGGCTCTAAGCCGCGCTTCGGGGGAGGGCATCGGGTGGC
TCGCGGCTGGCGATATACCAACCCCTCTCTAGCGAGTGCCCTGTCCCTCT
TCTCTTTGGTGTTGCGCGCGTGCGTGTCTCCGTGTCTCCGCCGTGCATCC
GTTTTTATCTATATGTTCCCTGCGCGTCTCTGCAACCCACCTACCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig996:272166..274163-

>mRNA_A-nodosum_M_contig996.48.1 ID=mRNA_A-nodosum_M_contig996.48.1|Name=mRNA_A-nodosum_M_contig996.48.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=963bp|location=Sequence derived from alignment at A-nodosum_M_contig996:272166..274163- (Ascophyllum nodosum dioecious)
ATGCGGACGGTCGTAGTGCACGCAAATACCATGACTCGTAAGCATAATCG
AGGTCGAATCATCTTGATCTTGCAGGCATGGCTCGTTCCGTGCCATGGCT
TTCGCTCCACAAGCTGTCTCCAAACGTCACATGTGGCCCTCCGCGCCCTT
CAACGCCATGCACCCTTATTTCCTCACGACCAACGGCTTCGTACTCTCAG
CGACGTCGTGCGGAGGCGACTCTCTAGATTGGGTATGACCGAGCAGGGAG
AAGGGTTCCACGATCCTTACGGAGACGAGAGTCAGGAACAGGAGCCATCG
TGGGGCCGCGGAGTCGGCGCTGGTAGCGAGGGTATTATTCCCGTCCAACC
CTATCGCGAGGAGCACACCGCCGGCGGGAGGAAGTTCAGCGAATTACTTG
CGCGGGCAAAAGGAAAAAACCCGGCGCGTTCGTTTCAGGCCGCGCCTCGC
CATCCTGTGCCCCCGGAAGGACCAATTGACTACGACCAGGATTCCCAATG
GGAAGACCAGCTCATAGGTTCCCCGAACCTGCCAGACCCGCCTCTCAGAA
ATGAGATGCCCGGCCTGAGACTGTCTCCAGAGATAGATTACGACGGGCTA
GAGGAGGCTAGCCCTGGAAACCTCGGCAGCGGCGGCGACGGTGGTGACCG
TTTCCAGCGGATGATGCAGCAAGCCCAAACGAACGACCAGCGGCAAGCTG
CTGGTATACCGCCGGTATCGGTTCAAAATACCCGTCCTTGGCGTGCCGAC
GCGAGGCCGTTGCTTCTGAGCAAGGAGGAGAAGGAGAGGGCGCTAAGGGC
GGCTGTGGAACGGCAGCAGAACATGATGGCCAAGGCGCGGGGCATCAACC
TGGACGACCCGACCCTGGAGGGCACGGAGCTAGCGAAGAAGAGGGCTCTA
AGCCGCGCTTCGGGGGAGGGCATCGGGTGGCTCGCGGCTGGCGATATACC
AACCCCTCTCTAG
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