mRNA_A-nodosum_M_contig995.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig995.5.1
Unique NamemRNA_A-nodosum_M_contig995.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig995.5.1 vs. uniprot
Match: A0A6H5KUS0_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.050e-14
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 3 
Query:  675 VALLDSGSPCSFVIQAAINEMLQKGAASADMIAVNDKPRKWGGFTESEEALQTNSTAGLSVQFYNSKEPTAYMQLYCHIVPPMVLQHDLLLGRDSFLKFHNPTYATLP 998
            VALLDSGSP SFV  + +  M+  GA ++  + V+   R+WGGF +   AL T  +  L+V F +    TA + ++  +VP   + H +LLGRDS+++F++ T+ TLP
Sbjct:  350 VALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPS-RRWGGFGDGP-ALVTTKSVRLTVNFLHGDRATASLAVWACVVPDAAMGHAVLLGRDSWMRFNSRTFTTLP 455
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BLAST of mRNA_A-nodosum_M_contig995.5.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.220e-13
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 3 
Query:  675 VALLDSGSPCSFVIQAAINEMLQKGAASADMIAVNDKPRKWGGFTESEEALQTNSTAGLSVQFYNSKEPTAYMQLYCHIVPPMVLQHDLLLGRDSFLKFHNPTYATLP 998
            VALLDSGSP SFV  + +  M+  GA ++  + V+   R+WGGF +   AL T  +  L+V F +    TA + ++  +VP   + H +LLGRDS+++F++ T+ TLP
Sbjct:  350 VALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPS-RRWGGFGDGP-ALVTTKSVRLTVNFLHGDRATASLAVWACVVPDAAMGHAVLLGRDSWMRFNSRTFTTLP 455
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BLAST of mRNA_A-nodosum_M_contig995.5.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.280e-13
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 3 
Query:  675 VALLDSGSPCSFVIQAAINEMLQKGAASADMIAVNDKPRKWGGFTESEEALQTNSTAGLSVQFYNSKEPTAYMQLYCHIVPPMVLQHDLLLGRDSFLKFHNPTYATLP 998
            VALLDSGSP SFV  + +  M+  GA ++  + V+   R+WGGF +   AL T  +  L+V F +    TA + ++  +VP   + H +LLGRDS+++F++ T+ TLP
Sbjct:  397 VALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPS-RRWGGFGDGP-ALVTTKSVRLTVNFLHGDRATASLAVWACVVPDAAMGHAVLLGRDSWMRFNSRTFTTLP 502
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BLAST of mRNA_A-nodosum_M_contig995.5.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.470e-13
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 3 
Query:  675 VALLDSGSPCSFVIQAAINEMLQKGAASADMIAVNDKPRKWGGFTESEEALQTNSTAGLSVQFYNSKEPTAYMQLYCHIVPPMVLQHDLLLGRDSFLKFHNPTYATLP 998
            VALLDSGSP SFV  + +  M+  GA +A  + V    R+WGGF +   AL T  + GL+V F +    TA + ++  +VP   + H +LLGRDS++ F++  + TLP
Sbjct:  645 VALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVLPF-RRWGGFGDGP-ALVTTRSIGLTVNFLHGDRATASLAVWACVVPDAAMGHAVLLGRDSWMSFNSRVFTTLP 750
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BLAST of mRNA_A-nodosum_M_contig995.5.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.670e-12
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 3 
Query:  675 VALLDSGSPCSFVIQAAINEMLQKGAASADMIAVNDKPRKWGGFTESEEALQTNSTAGLSVQFYNSKEPTAYMQLYCHIVPPMVLQHDLLLGRDSFLKFHNPTYATLPN 1001
            VALLDSGSP SFV  + +  M+  GA +A  + V+   R+WGGF +   AL T  +  L+V F +    TA + ++  +VP   + H +LLG DS+++F++  + TLP+
Sbjct:  349 VALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVSPS-RRWGGFGDGP-ALVTTRSIRLTVNFLHGDRATASLAVWACVVPDAAMGHAVLLGHDSWMRFNSRVFTTLPH 455
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig995.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KUS0_9PHAE7.050e-1439.81NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L323_9PHAE1.220e-1339.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JK47_9PHAE1.280e-1339.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD5_9PHAE5.470e-1340.74NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JVW3_9PHAE1.670e-1238.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig995contigA-nodosum_M_contig995:20659..21780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1122
Hectar predicted targeting categoryother localisation
Exons1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.8732595-UTR-A-nodosum_M_contig995:20658..209991680870535.8732595-UTR-A-nodosum_M_contig995:20658..20999Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 20659..20999 -
1680870535.90086-UTR-A-nodosum_M_contig995:21728..217801680870535.90086-UTR-A-nodosum_M_contig995:21728..21780Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 21729..21780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.8903341-CDS-A-nodosum_M_contig995:20999..217281680870535.8903341-CDS-A-nodosum_M_contig995:20999..21728Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 21000..21728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig995.5.1prot_A-nodosum_M_contig995.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig995 21000..21728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig995.5.1

>prot_A-nodosum_M_contig995.5.1 ID=prot_A-nodosum_M_contig995.5.1|Name=mRNA_A-nodosum_M_contig995.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=243bp
MPKVALGSKDVRKTPDGTTTKKKIRNEDVSSTPLPGGKCRSTPYRETNTM
DAAAAVRVKKRDDLIRNEDDVEQSLKDPIWEMRWTRQNKTGEISLIKNAW
VQSKNDRKAELSDSQSIPFAGRHIFEIMYNDLAKKMKQAEGHGKNTEKTR
GLKIQANPYEWISLVEDNGYLHEFGPEPMEGKVSVNHDNFTTIVSIHGGQ
KATKGQMCCTSGQWLSLFVRNSSSNQRNAAEGGGFRRYDCGK*
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mRNA from alignment at A-nodosum_M_contig995:20659..21780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig995.5.1 ID=mRNA_A-nodosum_M_contig995.5.1|Name=mRNA_A-nodosum_M_contig995.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1122bp|location=Sequence derived from alignment at A-nodosum_M_contig995:20659..21780- (Ascophyllum nodosum dioecious)
GTGCTTGCCTAGGAATCCAGACCTAGGTGCGATAAAAAGACCTACTCAAG
CAATGCCTAAGGTAGCCTTGGGAAGTAAGGACGTAAGGAAGACGCCCGAT
GGTACCACAACAAAGAAAAAAATACGTAACGAAGACGTAAGCTCCACCCC
GCTTCCAGGGGGCAAATGCAGATCAACCCCATACCGTGAGACAAACACAA
TGGATGCTGCTGCAGCTGTAAGAGTGAAAAAACGAGACGACCTAATACGT
AATGAAGATGATGTTGAACAGTCTCTGAAGGACCCAATTTGGGAAATGCG
TTGGACTAGACAAAATAAAACTGGAGAGATAAGTCTAATCAAGAACGCAT
GGGTACAAAGTAAGAATGACAGGAAAGCGGAATTGAGCGACAGTCAATCT
ATCCCTTTCGCGGGTCGGCACATTTTTGAGATAATGTATAATGACCTGGC
GAAAAAAATGAAACAAGCTGAAGGCCATGGTAAAAACACGGAGAAAACCC
GTGGCCTGAAAATACAGGCAAACCCCTACGAGTGGATAAGTTTAGTGGAG
GATAATGGCTATCTCCATGAGTTTGGTCCCGAACCTATGGAAGGTAAAGT
ATCGGTGAATCACGACAACTTTACTACGATAGTAAGTATTCATGGAGGCC
AAAAAGCCACAAAAGGACAAATGTGTTGCACTTCTGGACAGTGGCTCTCC
CTGTTCGTTCGTAATTCAAGCAGCAATCAACGAAATGCTGCAGAAGGGGG
CGGCTTCCGCAGATATGATTGCGGTAAATGATAAGCCGCGAAAATGGGGT
GGATTTACAGAAAGTGAAGAAGCCTTGCAAACAAACAGCACTGCAGGACT
TAGTGTGCAGTTCTATAACAGTAAGGAGCCAACGGCGTACATGCAGTTAT
ATTGCCACATCGTCCCTCCGATGGTTTTGCAGCATGATTTGCTGCTTGGA
AGAGACTCCTTCCTAAAATTTCACAACCCTACGTATGCCACTCTCCCCAA
CGAGACGGGAAAGCCGAGTGTAGGCATACTCGACCTGAGAAAAAAAAACA
AAAGCGGTGGCATTGATTCAAGCAGAGGATAAAGAAAACGATTTTCACTT
GCGATATGTGGGCAAAGAAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig995:20659..21780-

>mRNA_A-nodosum_M_contig995.5.1 ID=mRNA_A-nodosum_M_contig995.5.1|Name=mRNA_A-nodosum_M_contig995.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=729bp|location=Sequence derived from alignment at A-nodosum_M_contig995:20659..21780- (Ascophyllum nodosum dioecious)
ATGCCTAAGGTAGCCTTGGGAAGTAAGGACGTAAGGAAGACGCCCGATGG
TACCACAACAAAGAAAAAAATACGTAACGAAGACGTAAGCTCCACCCCGC
TTCCAGGGGGCAAATGCAGATCAACCCCATACCGTGAGACAAACACAATG
GATGCTGCTGCAGCTGTAAGAGTGAAAAAACGAGACGACCTAATACGTAA
TGAAGATGATGTTGAACAGTCTCTGAAGGACCCAATTTGGGAAATGCGTT
GGACTAGACAAAATAAAACTGGAGAGATAAGTCTAATCAAGAACGCATGG
GTACAAAGTAAGAATGACAGGAAAGCGGAATTGAGCGACAGTCAATCTAT
CCCTTTCGCGGGTCGGCACATTTTTGAGATAATGTATAATGACCTGGCGA
AAAAAATGAAACAAGCTGAAGGCCATGGTAAAAACACGGAGAAAACCCGT
GGCCTGAAAATACAGGCAAACCCCTACGAGTGGATAAGTTTAGTGGAGGA
TAATGGCTATCTCCATGAGTTTGGTCCCGAACCTATGGAAGGTAAAGTAT
CGGTGAATCACGACAACTTTACTACGATAGTAAGTATTCATGGAGGCCAA
AAAGCCACAAAAGGACAAATGTGTTGCACTTCTGGACAGTGGCTCTCCCT
GTTCGTTCGTAATTCAAGCAGCAATCAACGAAATGCTGCAGAAGGGGGCG
GCTTCCGCAGATATGATTGCGGTAAATGA
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