mRNA_A-nodosum_M_contig995.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig995.30.1
Unique NamemRNA_A-nodosum_M_contig995.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig995.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig995contigA-nodosum_M_contig995:214590..215283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size461
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.8169534-CDS-A-nodosum_M_contig995:214589..2148081680870535.8169534-CDS-A-nodosum_M_contig995:214589..214808Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 214590..214808 +
1680870535.829345-CDS-A-nodosum_M_contig995:215043..2151751680870535.829345-CDS-A-nodosum_M_contig995:215043..215175Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 215044..215175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.843697-UTR-A-nodosum_M_contig995:215175..2152831680870535.843697-UTR-A-nodosum_M_contig995:215175..215283Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 215176..215283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig995.30.1prot_A-nodosum_M_contig995.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig995 214590..215175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig995.30.1

>prot_A-nodosum_M_contig995.30.1 ID=prot_A-nodosum_M_contig995.30.1|Name=mRNA_A-nodosum_M_contig995.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
AASWRWRRARKRRNSTSTVLGGIYFQTFRSMRTMTRTTKRMRTMRTMRTT
KTTRTMRALLPRAPMTTESLLTEKTASRRCSIKTLHPMITRKMLLLSCDS
GSKEILPWAQGKQSAR*
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mRNA from alignment at A-nodosum_M_contig995:214590..215283+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig995.30.1 ID=mRNA_A-nodosum_M_contig995.30.1|Name=mRNA_A-nodosum_M_contig995.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=694bp|location=Sequence derived from alignment at A-nodosum_M_contig995:214590..215283+ (Ascophyllum nodosum dioecious)
GCCGCAAGCTGGAGATGGCGGCGCGCGAGGAAGCGGCGAAACTCCACTTC
GACGGTGTTGGGGGGCATATATTTTCAGACATTCCGTTCGATGAGGACGA
TGACGAGAACGACGAAAAGGATGAGAACCATGAGAACCATGAGAACGACG
AAAACGACGAGGACGATGAGAGCTCTTCTTCCGCGAGCTCCGATGACGAC
GGAGAGTTTATTGACGGAGGCGAGTGACCCTTGATTTTACAGCTGCTTCG
GATAGCAACTAGCCGAACACGGTGTAGTGTTTTGACTACTACGCGCTTCG
ACGAGCAATCAATGCACGACTATTAGTCCAATACTACAATGTAATATATT
GGATTTGAATGCTCAAGTACCATTCGACAAGACAAGAGATTAAATGGTCA
ATTTCCTTCAACAACGTGGTGATCTGTATTCCTCCCACCCTCTTCTTCCC
GCAGAAGACAGCATCACGGCGATGCTCGATAAAGACGCTGCATCCGATGA
TAACGAGAAAAATGCTCCTGTTGAGTTGTGACAGCGGTAGCAAGGAAATA
TTACCTTGGGCGCAAGGGAAGCAGAGTGCGCGCTGAGGATCTACCTACTT
CTTCTTGTACAAGTCTCTGCCCCCGGGAAAGCTTCACCGAAATGGACGTG
TAATTTACACCGTAGAAACTAGGAGCACAAATACTCCTTGTCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig995:214590..215283+

>mRNA_A-nodosum_M_contig995.30.1 ID=mRNA_A-nodosum_M_contig995.30.1|Name=mRNA_A-nodosum_M_contig995.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig995:214590..215283+ (Ascophyllum nodosum dioecious)
GCCGCAAGCTGGAGATGGCGGCGCGCGAGGAAGCGGCGAAACTCCACTTC
GACGGTGTTGGGGGGCATATATTTTCAGACATTCCGTTCGATGAGGACGA
TGACGAGAACGACGAAAAGGATGAGAACCATGAGAACCATGAGAACGACG
AAAACGACGAGGACGATGAGAGCTCTTCTTCCGCGAGCTCCGATGACGAC
GGAGAGTTTATTGACGGAGAAGACAGCATCACGGCGATGCTCGATAAAGA
CGCTGCATCCGATGATAACGAGAAAAATGCTCCTGTTGAGTTGTGACAGC
GGTAGCAAGGAAATATTACCTTGGGCGCAAGGGAAGCAGAGTGCGCGCTG
A
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