mRNA_A-nodosum_M_contig995.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig995.3.1
Unique NamemRNA_A-nodosum_M_contig995.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig995.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig995contigA-nodosum_M_contig995:15807..20592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870535.7694807-CDS-A-nodosum_M_contig995:15806..158891680870535.7694807-CDS-A-nodosum_M_contig995:15806..15889Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 15807..15889 -
1680870535.7850254-CDS-A-nodosum_M_contig995:20273..205921680870535.7850254-CDS-A-nodosum_M_contig995:20273..20592Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 20274..20592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig995.3.1prot_A-nodosum_M_contig995.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig995 15807..20592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig995.3.1

>prot_A-nodosum_M_contig995.3.1 ID=prot_A-nodosum_M_contig995.3.1|Name=mRNA_A-nodosum_M_contig995.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MTGSYFVQFLEEWNLDEDVMIVKEGRQNTPLTSHEYTQISPGALLGISNG
TMRSITLENTRLQEPIRRTDVATIRKISQLDEGRGEESDRREEPRVTLGA
HLPAPQRELMRPRRRGTTTHRSEHFWEAQYNLF*
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mRNA from alignment at A-nodosum_M_contig995:15807..20592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig995.3.1 ID=mRNA_A-nodosum_M_contig995.3.1|Name=mRNA_A-nodosum_M_contig995.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4786bp|location=Sequence derived from alignment at A-nodosum_M_contig995:15807..20592- (Ascophyllum nodosum dioecious)
ATGACAGGATCGTACTTCGTACAATTTCTTGAAGAATGGAATTTGGACGA
GGATGTAATGATTGTGAAAGAGGGAAGGCAAAATACTCCTCTTACGTCAC
ATGAGTATACACAAATTTCTCCGGGCGCACTCCTGGGTATATCAAACGGC
ACGATGCGATCGATAACTCTGGAAAATACCAGATTACAGGAGCCCATTAG
GAGGACGGACGTGGCGACAATCAGGAAAATCAGCCAACTGGACGAGGGCC
GGGGCGAGGAGAGCGATCGGAGGGAGGAGCCACGGGTTACGCTCGGAGCT
CACCTGCCCGCCCCACAACGTGAGTCACTCAAGAGAGTATGGCAGAAGCT
TCCCAAACACATGAGAGAAATAAAGTTCAAACTTGCAGGGCGAGGGTGGA
ACCATACGATCATCGAACGCTTGGGGAAAGTACTCCTAAAGTATCAGCAT
CGATTTTCGAGAGGTCAAGAGGACTTGGGGTTATACAAGAGTGACCCGTT
CGAAATCAAACTCAAAGAAGACGCGAAAACACCAATCGCTTCGCGCAGCT
ACAGATATAATCCAGTGGTAGCGAAAGAGGTCGACTCGATAATAGACAAG
TACCTAAATGCAGGCATAATAAGATGTCACAATCGCCATACGCTACTCCG
ATAGTTGTGGTACTAAAGAAGAATTCGAATTACCTGCGACTACAGACGCT
TAAACGAAGCTACAGTGATTCCACAAGCACCGATCCCTCGGATCGATGAG
CTTTTAGACACGTTAGGATCGGCGAAGCTCTTCAGCTCATTTGATATGAT
GTCTGGGTTTCATCAAATTATGATAGGAGAAAACAGCGTGCCCCTCACAG
CATTTTGTACTGCTTCTGGGTTGTACGAGTTTCTAGTGATGCCTATGGGA
ACCTCAGGCTCTCCCGGACACTTTCAAGGAGTCATGCAGCACGTTACCGC
AGACTTGGCCCATTTCGTAACTCTTTACATTGACGACGTACTGGTTCGTA
GTAACGACGAGGCGAGCATGGTTGACCACATTGAAAGGTTCCTGAAGGCT
CTTACCAATCATAACCTAAAAATCTCGCCGAGTAAAACAGAAATTGGTGC
TGAAGATATAAACTTTCTAGGGCATACGATATCACCTCGAGGTGTTAAGC
CGGATGCTAAAAAAGTCGACGCGTTACGTAAGCTACCCATGCCGAACAAC
ATAACGGAGCTAAGATCGCTCCTAGGTGGGTTGAGCTATTACCGAAAATT
TCTGCCAAATTTATCGAAGAAGTTAAAGTCGATCACCAGACTACTTAAGA
AAGACTTACCGTTCCACTTCACGGCGGAGATGGAGACAGTTGTACGCGAA
ATCCTCAGTGTACTGACCGAGTCTCCGGTATTAGTGCACCCTGATTTCGA
AGCGGCCCGTAATGGCACGCGAAAATTTCGTCTGTACTGTGACGCTAGCG
CTGCTGGGTTTGGCGCTACCCTAGAACAGCCACAGAGCGATAACTCAATA
CGGCCAATAGTGTATTTGAGCCGTACGGTACTGCCTAACGAAAAAGGTTG
GGCGCCGATCGAAAAAGAGGCAGGATGTATCGTCTGGGCCATCAAGCGCC
TGGGGCAATATCTGTTCTTGATCCCGTTTGACATATATACGGATCATTCG
CCTCTCACTAGCCTACTGCGCGTTGGGGACAGCAACGCCCGAGTACAACG
ATGGGTAGAGTTCCTAACGGCATACAACTACAGAATAATCTATAGGAAAG
GTGCCGCGCACGGTAATGCAGACATGTTGTCGAGACTCTGCCAGCCAGCA
ACCGATGCGGATGCTCAGGGGGCGTGTACGATCACAAATCCAGAGGATCA
CGCGGTATTTTTTGTGGGCGCGAGCGGAATGTGGCCGAGGAGCATACCTC
CATCAGCTTACAACGTATGCATCGATACTAGTGTCGCAAGACAGAGGTTA
GGCGTGGGTGGGCTCCTCACTGCCCCAGATTACTCGTACGACAAGAGCAA
AAATCAGTATGTCTATTATGGACACAGAGATGTGGAAGAACATGTACTCC
ACAACCCTACTTCAACATGGCATTCTTTATGCAAAAGATTTCTACAGCAA
AAGGAGCTAACAATATGTACAGTACAAAGGTACAGTAACTCCAGAACAGC
GACTATAGCGGCTGTAGTTGCAGCTCAATGCAAACCAAAGCAAGGTCCTC
TTCCACTACGACGATCGCCGCGTAAGCGACGACCATCCAGAGTCATGATC
GAAGCGATGGAATCGTCCGCGAGAAATGAGCCCTTAGCGTCGATTGACGA
GGCGAATGTTACATCACAAGAGAGCGGTACTCACGAAATCGACGTCGGTA
CAGAACAAGTAATAACATCGAAAGAAAGCAGAGAAGATGATACTCCTGAA
ACGCGCACCGACCATAAACTAACGTCCCCGGATGGGGAGGAGCCTCTCAC
TGAGGACATTGATGTCGGAGAAGACACAACACCTGAACCGTCGTCTAACA
GAACTCGACAAGCCATCCCAGATTCGTCTAGGGACGCTCGACTTGATGTC
GATCTAGGTTCGATGACTGCCCAAATGTGGAGTCAGGAACAATTACAGGA
ACCAGTTTGCAAAAGTGTGATCACTCTTTTACAGCGAAGTCTGAGTGGTC
CATCTCCGCAAGACATACTGCTACAATAACTACCATGGACGCGGCCTACA
GTACAACAAGTATTAGAGCTTGCGGCCAAGAGTAGGCTGTTCACTGCCGA
AGGGAACTTCTCGTTACTAGTAAAACGCAAAACAAGCAGAGCAGAGCTAC
CGCATGCAGGAGGCAGGGTTCCCCAGATCTATGTCCCGATGCTCATGAGA
CCCTGGGTTCTCAAGGGATGTCATGCGGATTCAGTTTGCCATTTTGGAGT
AACTCGTACCCTACAAATGGTACAGCGTTTTTACTGGTGGATTGGTTTGG
ACCAAAGTGTTAGATGGTGGATTAGGAGGTTTCTTTTCTGCCAAACACGA
AAAACATCACGACAGACGATCCGATGGCCAACCACGTTGATGCCTCCTCT
ACCTAGTGGCCCAGGCCAAATCATCAGCGTCGATTACATTGGCCCTTTAC
CGATTACAAGACAGGGTAACAAACATATACTGCTGTACACGGATAGGTTC
AGCAGACATATTGCCGCGTACGCAGTTACCCGAGACGAACGCACAGCGGA
AGGAACTGCCCGAATTTTCGTTGAGCAGTACATTCCTCTTTGGGGATGCC
CCCATACACTCTTGTCCGACAATGGGACAGAGTTTGTAGCGCGCCTTTCA
CTTGCAATATACAAGTTGATGAAAGTACGCAAAATAGCGACAACAGCCTT
TCACCCGAAAAGCAACGGCGGGGTAGAACGAGTTAACCACTCACTAGCAC
AGATGCTATCGCTGGTTATTAGTGAGCAACAGGACGACTGGGATGAATGG
TTGCCCTACGTGGTACAAGCCTACAATAATTCAGTCAGTGCAGCTACAGG
TCTAGCGCCGAACGAGATACATCTAGGGCGCATGCCACGATTGCCAATGA
CCGTAATTGACGAGTGTGTTGTTAAGGGACATACGGGCGAAAGACAGGAT
CAACTGCTGTACCTCGACATTGTTCGGGAAAGGCAACAACGCGCCTTCGA
ACTAGTACAGGAGAGTCACCTGATAGCCATGTCAAAAATACAGCGCTCCA
ACACTAAGCTACTAGCGATACTACACAAGTTGCCGAATTTCGAAGTTGGC
AATTGGGTATGGACGTACAATCCGCAAGCCACAATTGGTCAGGGTGGAGG
CGAAGATAGTTCGCAGATTGTGACAAAGCTGTCACTAAACTGGACAGGCC
CCTACAAGATTCTAGTAGTGGGACCAGGTCTTGGACCAGATGGTCGACCG
GTCGCAGATAAAACTCTATACCTAGATCTTCCCACTGATATGCCGGGGAA
GGATCAGAAGAAACGGGTATCTGTAGATCGCTGTAAAATGTGCCATAATC
CTAGTGATGATTTGGACATTCCCAAGTACTTACCAGCAGGGCTGAGTAAA
TATGTACTACATTCTTTCACAGACAAATCCCCACCATTTTACCCAACAAC
TGAGGATGTGGTGAAATCTGGCATACCAGTGGATATAGAGAAAATCACTG
GGCATCAGCTTGTTCGGGGACGGGCCGGTAAGCTAGCCGTCATGTATGAG
ACCCACTGGGAGGGTCTATCTTCGATCACGTGGGAACGTGAAATCGATCT
GAGAAACTTCTCGCGATACATTCTTGAATATTGGATGTCAACTCCAAGAC
AAGTTAAGGGTGTAAATTCCAAGTATCGTGCCATGCGCAGAGCCCAGGCA
CACAGAGCCTACTGGCGCACCAAAACAAGTACTACCTAGAACAAGGATAT
CATCTAGTGTCATACAGTACTTGGGAAAAGAAATTCAGAAGGCGGCGAGT
ACCGCTTCGAGCCTTCTTTTGGTGGAAAAACCATCAAGGTTGGTGGTTGG
GACAGGTGAAGGCATGGGACAGAGATGTCTATGATCAATATTTCGTGCGA
TTCCACGATGGTCCCGGACTCTCACAAGTAATGCTGGCGGAAGAATTCTA
CACAACGGACGTTGATGGTGTACCAGGATCATGGTGCTTACAATCTCATA
TACGGGACGGTATTTTCCGCGATACCGACATGTCCCGTGATGCCGATTTC
CAGGAGAGCTGATGAGGCCAAGACGAAGAGGGACGACAACGCATCGGAGC
GAGCACTTCTGGGAGGCCCAGTATAATTTGTTTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig995:15807..20592-

>mRNA_A-nodosum_M_contig995.3.1 ID=mRNA_A-nodosum_M_contig995.3.1|Name=mRNA_A-nodosum_M_contig995.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig995:15807..20592- (Ascophyllum nodosum dioecious)
ATGACAGGATCGTACTTCGTACAATTTCTTGAAGAATGGAATTTGGACGA
GGATGTAATGATTGTGAAAGAGGGAAGGCAAAATACTCCTCTTACGTCAC
ATGAGTATACACAAATTTCTCCGGGCGCACTCCTGGGTATATCAAACGGC
ACGATGCGATCGATAACTCTGGAAAATACCAGATTACAGGAGCCCATTAG
GAGGACGGACGTGGCGACAATCAGGAAAATCAGCCAACTGGACGAGGGCC
GGGGCGAGGAGAGCGATCGGAGGGAGGAGCCACGGGTTACGCTCGGAGCT
CACCTGCCCGCCCCACAACGAGAGCTGATGAGGCCAAGACGAAGAGGGAC
GACAACGCATCGGAGCGAGCACTTCTGGGAGGCCCAGTATAATTTGTTTT
GA
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