mRNA_A-nodosum_M_contig995.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig995.18.1
Unique NamemRNA_A-nodosum_M_contig995.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: D8LC75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC75_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 9.530e-54
Identity = 129/198 (65.15%), Postives = 139/198 (70.20%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAMEKSRKECEXXXXXXXXXXXXXXXXXXEGPAK---QARTEGAPKDSSSGSAGSGGSASDSGAT-----EEFVYIPLKDQAALGGDGGAPAAFKNDGSFLERMKKEL 1087
            MGRYTTVQAYSDNNPKLVHVSYDQAKGKD+ +GKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRR E+HRVAAM+E A+  EA AKLHEA+EK + ECE      XXXXXXXXXXXX        QA+T        S                    +EFVYIP  D A  GGDGG+   FKNDGSFLE MKKEL
Sbjct:    1 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDNDEGKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRREMHRVAAMDEEAQVAEATAKLHEAIEKGKNECEERTRKKXXXXXXXXXXXXXXXXXXXXQAKTGAXXXXXPSXXXXXXXXXXXXXXXXXXXEDEFVYIPEADLATAGGDGGS--GFKNDGSFLEMMKKEL 196          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A835YZ44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ44_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.150e-21
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAME 799
            MGRYTTVQAYSD+NPK+  VSY+QA    +    A G+L  +K D VMGS AGAGSGEFH YRA RR EIHR+AA+E +AK +E    L   +E
Sbjct:    1 MGRYTTVQAYSDSNPKVAKVSYEQATQGGEKHTTASGRLQTDKVDNVMGSTAGAGSGEFHMYRAARRREIHRMAAIEAAAKADEERRALEATIE 94          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A6S9D7T2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9D7T2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.600e-20
Identity = 82/199 (41.21%), Postives = 93/199 (46.73%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAGGKLVV--EKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAMEKSRKECEXXXXXXXXXXXXXXXXXXEGPAKQARTE----GAPKDSSSGSAGSGGSASDSGATEEFVYIPLKDQAALGGDG--GAPAAFKNDGSFLERMKKELA 1090
            MGRYTTVQAY+DNNP +  VSYDQA GK +      G   V  EK D   GS AGAGSGEFH YR  R  E+ R+A +E     EE    LHE  EK + E E            X              +    G  +D + G    GG        EEF Y P   Q    GD        FKNDGSFLE MKK+LA
Sbjct:    1 MGRYTTVQAYADNNPNMRSVSYDQATGKTEPSSSTAGAGAVKPEKVDNPYGSTAGAGSGEFHVYRHARSREMARMAQLEY----EEKQQLLHEDFEKRKHEMETEEERKTAKRRKXRMRGKXXXXXXXNMKLGGVGLQEDGTGGENLEGGE-------EEFEYTPTHRQIENKGDNDDAEKIEFKNDGSFLEMMKKKLA 188          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A7S2V2K9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2K9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 8.340e-19
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDG----DGKA-----GGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAMEKSRKECE 820
            MGRYTTVQ Y+DNNPK+V VSY QA G+D      DG A      GK+ V K D VMGS AGAGSG+FH+YRA R  EI R+ A+E  A++++   +    +++ R+ CE
Sbjct:    1 MGRYTTVQTYTDNNPKVVQVSYAQAVGQDKATRAQDGGAMVEQKSGKVKVPKVDNVMGSTAGAGSGDFHSYRATRMREIKRMEAIEAGARQDDLVEEFQHRLQQKRQSCE 110          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A4D9D064_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D064_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.240e-15
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESA 757
            MGRYT+VQAY DNNPK+  V+YD   G +D DG    +  +EK + V GS AGA S  FH YRAHRRTE+ R+A MEE A
Sbjct:    1 MGRYTSVQAYGDNNPKIASVAYD---GGEDRDGNPQ-RSKIEKLENVTGSTAGASSSSFHIYRAHRRTEMARLAEMEEKA 76          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A0P1A6J8_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6J8_PLAHL)

HSP 1 Score: 79.3 bits (194), Expect = 1.310e-13
Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYD-QAKGKDDGDGKA---GGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAMEKSRKECEXXXXXXXXXXXXXXXXXXEGPAKQARTEGAPKDSSSGSAGSGGSASDSGATEEFVYIPLKDQAALGGDGGAPAAFKNDGSFLERM 1075
            MG YTT+Q +SD + +   V+YD  +  KD  D  +   GGKLVV + D V GS AGAGSGEFHTYRA RR E+ R+A+ME+  K  +A  +  +   K +++ E              XXX    AK +  E                          V   L  +  L   GG P    NDGSFLE M
Sbjct:    1 MGCYTTLQTFSDQDAQGAAVAYDADSNAKDSSDAASNVKGGKLVVNRVDNVSGSSAGAGSGEFHTYRAARRREMDRIASMEQQYKDNKAQQEFED---KRKRKAEIFEAKMQKRTEKRRXXXERAKAKTSEIE------------------------SVVNTVLSKEKMLETPGGVPE-IPNDGSFLETM 162          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A7S2HD40_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HD40_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.660e-13
Identity = 49/111 (44.14%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGD----------GKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAMEKSRKECE 820
            MGRYTTVQAY+DNNP +  VSYDQA G+              G   G +  EK D   GS AGAGSGEFH YR  R  E+ R+A +E + K +     L E  +K +++ E
Sbjct:    1 MGRYTTVQAYADNNPSMRSVSYDQATGRSSSGVAAAASSSATGPGSGSVKPEKVDNPYGSTAGAGSGEFHVYRHARSREMARMAQLEHAEKNQ----LLEEEFQKKKRDLE 107          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A225X3R8_9STRA (RNA-binding protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3R8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.470e-12
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAGG------KLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEA 772
            MGRYT+VQ +SD + +   V+YD A  KD+    A G      K  V + D V GS AGAGSG+FHTYRA RR E+ RVAAME+  K  +A
Sbjct:    1 MGRYTSVQTFSDQDAQGAAVTYDAAS-KDESSAAASGADAKDGKFHVNRVDNVSGSSAGAGSGDFHTYRASRRREMERVAAMEQRYKDNKA 90          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: A0A484DQI6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQI6_BRELC)

HSP 1 Score: 74.7 bits (182), Expect = 5.050e-12
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAG----GKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAME 748
            MGRYTTVQ +SD + ++  V+YD    + +  G       GKL V + D V GS AGAGSGEFH+YRA RR E+ RVA ME
Sbjct:    1 MGRYTTVQTFSDQDAQVATVAYDATVKEKEPSGTTSEIKDGKLHVNRVDNVSGSSAGAGSGEFHSYRAARRREMERVAVME 81          
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Match: G4YMD8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YMD8_PHYSP)

HSP 1 Score: 73.2 bits (178), Expect = 2.690e-11
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  518 MGRYTTVQAYSDNNPKLVHVSYDQAK----GKDDG--DGKAGGKLVVEKTDQVMGSCAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEA 772
            MGRYTTVQ +SD + K   V+Y+ A        DG  + K   KL + + D V GS AGAGSG+FHTYRA RR E+ RV AME+  K+ +A
Sbjct:    1 MGRYTTVQTFSDQDAKGAAVAYNAASEPAAAPADGANESKDSSKLHINRVDNVSGSSAGAGSGDFHTYRAARRREMERVEAMEQRYKENKA 91          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig995.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC75_ECTSI9.530e-5465.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZ44_9STRA6.150e-2158.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9D7T2_9STRA2.600e-2041.21Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2V2K9_9STRA8.340e-1950.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D064_9STRA8.240e-1557.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0P1A6J8_PLAHL1.310e-1335.79Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A7S2HD40_9STRA8.660e-1344.14Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A225X3R8_9STRA3.470e-1250.55RNA-binding protein n=1 Tax=Phytophthora megakarya... [more]
A0A484DQI6_BRELC5.050e-1251.85Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G4YMD8_PHYSP2.690e-1149.45Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig995contigA-nodosum_M_contig995:74201..84636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC75
Preferred namePRKRIP1
PFAMsDUF1168
Model size1562
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0003008,GO:0003014,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006469,GO:0008150,GO:0009892,GO:0010563,GO:0010605,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0033673,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:0098772,GO:1901363
Exons5
Evalue2.11e-58
EggNOG OGsKOG4055@1|root,KOG4055@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1168
Ec32 orthologEc-20_004720.1
Descriptionprotein kinase inhibitor activity
Cds size624
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig995.18.1prot_A-nodosum_M_contig995.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig995 78828..84215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870537.0018668-UTR-A-nodosum_M_contig995:74200..746661680870537.0018668-UTR-A-nodosum_M_contig995:74200..74666Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 74201..74666 +
1680870537.0177314-UTR-A-nodosum_M_contig995:78776..788271680870537.0177314-UTR-A-nodosum_M_contig995:78776..78827Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 78777..78827 +
1680870537.073835-UTR-A-nodosum_M_contig995:84215..846361680870537.073835-UTR-A-nodosum_M_contig995:84215..84636Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig995 84216..84636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870537.028837-CDS-A-nodosum_M_contig995:78827..788551680870537.028837-CDS-A-nodosum_M_contig995:78827..78855Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 78828..78855 +
1680870537.0389564-CDS-A-nodosum_M_contig995:83010..831461680870537.0389564-CDS-A-nodosum_M_contig995:83010..83146Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 83011..83146 +
1680870537.050004-CDS-A-nodosum_M_contig995:83541..836621680870537.050004-CDS-A-nodosum_M_contig995:83541..83662Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 83542..83662 +
1680870537.0603347-CDS-A-nodosum_M_contig995:83876..842151680870537.0603347-CDS-A-nodosum_M_contig995:83876..84215Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig995 83877..84215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig995.18.1

>prot_A-nodosum_M_contig995.18.1 ID=prot_A-nodosum_M_contig995.18.1|Name=mRNA_A-nodosum_M_contig995.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=208bp
MGRYTTVQAYSDNNPKLVHVSYDQAKGKDDGDGKAGGKLVVEKTDQVMGS
CAGAGSGEFHTYRAHRRTEIHRVAAMEESAKKEEAAAKLHEAMEKSRKEC
EERTRKKAEKRKRKKQAKREGPAKQARTEGAPKDSSSGSAGSGGSASDSG
ATEEFVYIPLKDQAALGGDGGAPAAFKNDGSFLERMKKELAGRDLDSSGG
SKAVAAS*
back to top

mRNA from alignment at A-nodosum_M_contig995:74201..84636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig995.18.1 ID=mRNA_A-nodosum_M_contig995.18.1|Name=mRNA_A-nodosum_M_contig995.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10436bp|location=Sequence derived from alignment at A-nodosum_M_contig995:74201..84636+ (Ascophyllum nodosum dioecious)
ACTGGGCCAGGGGGTACTCTCGTCAAACACAACTAAGGATCTACCAAAAC ACGCATCGTAGATCGACTACTGAAACTGCCATGAATCCTATTGGTCAGGC TTTCCCGGTAATCAATATGCATTTAGTAGTTACTTCGATTACTTCGATCA ATAGTACGTAACACCTCAAGAGATATATTACTTTATCCGGAGAAATTTGC CACGAGATACTTTTTGATTGCCCCCGTGGTCTCAAAAAATAATACCAGGA ACAGTGTATCATGAATAAGATTTCAGCGATTGAAGTCGACCTCGGATCCC CAACCGGCACAAGCACGATTACCTATTTGCCAACCTCTTGGGGGTGAGGG CAAGGGCAAGGCATGTAAACTCTGTCATTACGATGTGTGTCAAAACCGAA ACTGTTTGAATTCGATCCATCTCAAAATCGATCAAACCTGACTTATCGTT TGGGAAAGGGACCAAGGTAAGGATCGCAAGACTATTAATAGGAAGGGCTG GGCGAAAATTCACAATTCGGAAAAAAATAGCGATTTGCTCTCTGGTGTTC TTTCATCCCTCGATGAACACCTTAAAAACACGTACGGGGTTTTCGTGGGA GAGGCACTCACACTCCAGGCGTTCGACAAGCAAGCACATAGCAGACCACG ACCTTAGTGAACGGATCAATCTGTACCTCAAGGGCCTGCTTAGCTTATAT TAGCATACATTCAAGAACCGCAAGCAGTGTCAGAGCGTGGGGAGGCTTGT GCCGGAAAAGGGATCGTGGGCGGGGACCTGGTCGAATGGAGGAGAGGTGA TACGAAGGTTTCCAGCTTAAGCATATTGGTATTTCCGGCATGTTTGTACC GCGAGCTGTACATGCTCCACCGGTTAAGCCTGGTCGTCGGATATTTTCTT GGAGGTGATTCTGCCGTTTCATGCAATCTCGAGGTCAGGCACAAGTACTT GTACGTAGTAGGTGGTATCGTATTGTTGTTTTCTTCAAATTACTCTATAC CAGTACGGGGTAAAGAAGGTAAATTAGTATAAGTCTACCGTATAATGTAG AGCCTTAAAAAATAGGGAGAAATAGACAAGTCTGTGCACTAATCGCCCCA AGTATATCACAAAGTCTTAAAAACTTTAGATGCTGATATTACGTCGTCGG CGAATCTTCAGAGGCAAAATGGTAATAATAAGATAGGTGAAGCTATTAAT CCACGGATACAGTAATATCGATGACACTTATTATCGTATACTAATATTAC TACGGTACTATATTGTATTGTATTGTACTATAGTCTACACTATTGAATTA TGTACAACAATGAAACCCATGTACTGGTACTATTACAGAGTATATCAGAA TACTCTAGTCATTTAGATACATCAAAGGATAGGGGCCCAAATCGTGGCTA TACTTTATTTACGTAAGACAAGACAAGACAGTGATCCCACCTAAACGTAA CGTTTTGATTTTTTTCCCCTCCTGACTGGGGGATACTCAGAAGGTCGAGG CGCGTTCTGATTTTTCTTTAAAAAATATAATATTCTAGATTATTACATCT CGGTGACGTGAGAGGTTTGTAAACGATATATATATATAGAGCTCTAGAGG TATAAATATTTGCAGTCATTGGGGGGGCAACCGCCGGTACTTTCAGCATG CCCACTTCATACCATTAGTGGATGAGGGAAAGAGAGGCACATATTAATTG GTCCATGGTGACCTGCCAAGGCAGCACCCGTTTGGAACTATCTTGAGGTT TACTGGCCCTGTGGCAGCAGACTCTCGGCAGTGAACACCATCCGTACGCA ACCTCGACCCGATAAACTCGGGACTGACCCGATGGTGTATGGCGGTTTAG ATAAATAAATGGGCGCCGCCGCGGAATTCGGGAGGAATCCGTAAGTAAGC ACCAGATTCAGCCTGAGCATGGGATGAGCAAGCTGATGCGGGACGGGACT GCCGAACTCATCACGGACACCAAATTATCAGGCGCGAACGGGGACAGGAT TTTTTTTCCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCTG GTTGATCTCCCTCTTGCTATGATATGTGATGATCCATACATACATAGTTT GACAAATAATAGTAAGTTTAGAGAAAGTAAACAAGTGCGGGCACGTGATT GTTAACGTTATAGACATCCGGGGGAAATATGAGAAATTGTTTCATTTAAT AAAGTTATGTCTCAAGAGAACGGTAGCTCTAGGCTCTAAGTAAGAAGAGC GCTCGGAGAATTTTGGCAAACCAGCAATGGCGCGGGACGGGACGGCCGAA CCCGTCTCGCGAGACTTAATTCTCAGGCGCGAACTGAGGACAGGAAAAAT AATTTTCCTCTTGAGTTGGCCACGGGCAGGATTGGCAACCACACTCGGTT GATCCATACACACTCGGCTGAATGTGCTGGCCATACATAACACGTTCATT CTCCAAACTCGAACTGAACCTGGCGCTTCCCAAAGGCTCCTTTACTTTCT CCCGCTTGCCGCGACGATGACCATATTTATACCGTCAACCGTCATCAGGT CAGTCCCGAGTTTATTGGGCCATTCAACTTCAAACAGGGTACCGATGACG TTTACCACCCCGAGTCCACCGGCACAAGGCCAGTAGACCTCAAGGTAGCT CAAGTAACGGGTGCTACCTATTGTTCAGGTAACCTCATGGATACCGCTTG TGCTTTCAACATGCCCACTTCATACCAATTGTGGGTGTTGGAAAATAGAG GCGTATATTAATTGGTCCATGGTGACCTGCCTAGGCAGCACCCGTTTGGA ACCACCTTGAGGTTTACTGGCCCTGTGCCGGCAGACTCTCGGCATTGAAC GCCATCGGTACGCAATTGCGTGACTCGATAAACTCGGGACTGACCCGATG GCGTATGGTGGTTTTAATTTTAAATAGACGCCGCCGCGGAACTCGGGAGG AATCCCGTAAGTAAATAAAGCACCATATTCATCCTGAGTATTATGGAGAT GAGCAGGCTGACGCGGGACGGGACTGCCTAACGCGTCTCGCGAGACCAAA TTCTCAGGCGCGAACGGGGACAGGGAAATATTCATTTTCCTTATTCAGCT GACCATGAGGAGGATTGACAACCTTACCCGGAGTTGATCCATACTCTTGC TATATGTGATGATGAGCATACATGGACATAATTTTGTGCGCCGCTCTTTT CCTAAAGAGTACCAGTATTATATTAATAACTGGGCACGTGGTGAAAGAAT GTTTCGGTTTCGGATACATTATCGGGATGCTTGAGTCCTGCCCAAAACAC AATACAGAGTCAAGTGGTGGAAAACGGGGTGAACTAATGAAGCTGGTCAT AACTCCGCCATTTTGGAAAGTTGGATCGTGTGCAGCGGCTTGATCGAGAG GTCTTGCTCATGGCGCCCCGCCGATATCTTGTGGGGAGCTCCATCGGTTC GTTCTATAGCGAGCAACAGCAGTGAAAGATGATATGGGCCTGAAGGAGCC GATTGCTGCAAATTACGACCCGAGAGCTGTTCAGATTGTAGTTGAAAATC CGAGAAAAATCTAAATCTTCACAATTTTGGATTGACGAATTGGAGAAAAT TAACAAAAACATGCAGTATTTGTGACGCTATTGGTAAGGACCCCATTGGT AAGAGCTTTCGTTTGAATACCACCGTCGTGTAGGAGAGTCCGCCTTAGCA AGGGGCACAACCATTCGCATACTGTGTAGATTTTGATGAAAATACAGACA GACGCGTACTCTCGAAGAAGAGTTTGAAATTCTCCTTTGCCACCTCTGAG TTGGGTAGTGAACCTACACGGTAGCGTTGTCGAGCAGCAAACGAACATCA CGGCAAATGCATTAGACTGTTGTGTGTAGTCACTTGAGCTGGCGTTGGCA AATCTGTGAGGATAATTATTTGTAGAGCCGGCACCACAAAATCCGCGCTC CCAAAATTCTAACACAGAAATCATGAATTTCTGGGACCACGCTTCACTGC TCCCACCACAAAAAGTTTGCCAGCAATCTGGATTACCGCGACAGCAAGAC ATACGGAGTACTCCAGAGCAGCTCACTATTAATTGATACTTCAAAACTTT AAAATGTGGCGCAAGTACTTGTATAATCAAGAAGCCTTTGACGAAGTGAG AATTTTACGTCGGCTGTACGGTACTATTAATACTGTAAACAGAAGTGAAG TACTCGTGATACGATGTACGAGTATCTTGTAACATGATATGTAAACTCCG TGATTGAGGAATGGAAAATGCCAGGACAGCGCAGCACAGCAGTACAAGTA AGACTCGTAATACTCCGTATGAAGGTATGCTTGATGACCCCAGGGTGCTC TATCTCCAATAGATAGTTTTGCAAGCACAGTTCTTCTAGATCAGCGGGGA CAAAATCGTAATAGCCCCGGTATTCTCCGTTCGTTCGTGGGGGGAAAACA ATGAAAAAACAGAAGCGGAAAACATACATAACGTGCTGAAGGAGTTTGTA GCGGTGACGCGTTTCGCATCACACCTCTAGCCTCCGTTATCCCCGCTACT ACCCTCACTTGTTCGCGTAACTCGAGGCCTTGAACTGGCGAAGGCATTTG GTGAACTAAAGGCGCTTGGATCGAAAGATGGGGCGCTACACGACCGTACA AGCATGTGAGTAGTTTATAACGTCGTCAGGAATGGCCAGCTCGCGGTTTC TGCCGCCGTCCATCATTTGCTGACACGCGCTTCATAGTAACGTCGTCTCC GCCAAACTCAAACTTGGTTCTCGCAAACCCAGGCAACTCTTTCCTCCTTA AGCACGGCATACTTTGCAGCACCCGATCAGCATCGTAAAGAGTGTGAAGT GTCATCGAGTATCATCAGGCCGTGTCTCTGGTGTTTTCGGGCGAGTCATG TCATTTTTACGCGGGACCTTTGACTAAAACAATAGTAGTATCTGTACCTT CGACGCAGCACGTACAGGCAGACTTTGGCGCTACAACTTAGGCGCTACAA CTTAGGCGCTACAAGCGTCGATTTAACTTCATCTACAGGTGCATCCAGCG ACGACCTTAGCCACGTTACAGCCATGGAGACTCACCGCTCCATGATTTTA AATCGTATTGTCGGCCAATTTTGCAAGCGCCGTTGAGGGTCGCCCTTATT CGATCTTGAACATACTGAGCCAAACAGCACCACTTTCTCCCCTCAGCAGC TTCGTATTTATTTTACCCACGTGCCGGTCATCACCCGATAGAAATACCCC AAATGGTAGTAACTTTCACCCTTCAGTTCAACTTACATTTTCAGAAAGCA AGCCTTGTGTCCACGTCAAGTTATCCACCACCATGGTATCAGTACTCGTA GCGTAACATATTTACAGTAGTCTACTTAACATAATGGCGGTACTTCTGCC GCAATTTTTTGGTGGGGCTCGTAATGTAGACGATAGAAGAGCCGAGGTGG CGCCATCCGTGCGTTCAGCGTTTGGCGTTTGGCGTTTGGCGTCTACATTT GATTGCATCTGTAGCATGCTGCAGCTCTGCATAAAAAATACCAACTTGCT TTACCACGTACTACTGCTGTTTTTTTATTCCCATTTTATTACGAACGTCG CACGCGCTGCCAATCTCTCGATAGTAATCGTACATTTGTTCTCTATGGTA TACAGCAGTGGTACGTACAGACAGCACTCGTTTATTGTTTTTTTGCGCAC GATCTAAATCCTAGCCCCGCAGCAGCAGATGGCATCGTGGAGCTGCGCCA CTCGCCGCCGTAATTTTTCACATTAAAGCTGTATTCTAGTTTTTCGAACG TCCAATGTGGTATCAGAAAAATCTTTCCCATCCCCCACCCAATTCTTCTC CCAACCCCCACCCAATTCTTCTTAGGTACTGTATGTTGTTTAAAGAAAAA TCTGAATGCACCTAGACCTTCTGGTTTGTACATTCAGCGTATTGGTTGCC AACCCGAAAAACACTTTTTTACACGGTGGCCAATCCCGCTCGTGGTCTGC TGAATAGGGAAAAGAGAACAAAATAAAAAGTCTGGCAGCAATGGACTAGT CTAATTGATGATGGAACTACTGTACTACAGTATGCAAGTTGCGTTCAGTC TTGTAAGGCCGACTACTTTAGTGGGACACGAAACGCGAAACGGATTTCGC CGTTTTTTTTTTTTTTTTAAATGCCTATAGTCTATCTTATGGAAGCGGAT TTTCCGGAAATCCGCGAGAAAAATTCCGCGAGAGTGTTTTGATGAGTGCA ACTTGACAGAAATCGTTCAACGAAAACATTCGCGAATTTTACTGCGATGA GAGACATCGAGGCGTACCTCCTTCTTTCTTCCGTGAGCTATACTGTATAG CTATACAGTATAGTATAGCTATCATACGTGGGAGACGGCGCTCCTAAAGT CAAGCGCACCCGCCGTGTGTTCCCCCGGCCAGACTACATGCTGTCGACGT GGATGACCATGCTTCGCCAACCACGTCTGGTCCACCACAGATCGACAGTT TGTCCATCCCGTAAAGTCAGCTCTCGAGAAAAGTGTTGCAACTGCAGCTG GTTCGAATGTTCGAATTGCACGGAGCGGATTTGTCTGTAGGCACAGGAAT TAAAAAATTGGTACTCTTTGTACGTGTACAGCAGCAGGACGGGGTCTTCT TCCTGACTTTGCTATTTTGTTTTGCGTGTCGAGTATGTCCCTACAGGCCT GCTCCCGCCGCTGTTTACTTGTGTATCCAGTATACAATATACAGTACAGT ATACATCAATAGAGTTGCCGCCACCTGGTAGAGGGGATGTTATACAGCGC GAGCGCACGAAGTGACCACAGCGTGGATCAAAGGGAAGTTATATGTTCCA TGATTATCCCACAATAAATAGCAGCAAGCTCTTCACCAGTCGGAGAACGC CTACGGAAAAAATCCGTTTGCCATGAGATTGGGTCGAGTAAGTGATTCTG GGCCCTTTCACAACAAACGGATTCAGGAAAATCCCTTTCGCGTTTCGTGT CCCGTAAGAGCCTTAAGGGCCGTTCTCATCTCCAGACCGAACCCGTCTCG CGAAGTAAGAGGCCCCCTGAACCTTATAAAGGTAAAGGTGTTTTATACAA AATGAAAGTATTAAACGTAAAGTAGGAAAATCAGGCAAATAATAAATTAT GGGAACACGAGAAAAGAAAAAATTTAAAGGTAATAATCTTAAACCAAGAT TTTATCTATTCATCGTTCAAATAAACATATTTATGCTCAAAAAATTACTA AACTACTTTTAAAAATAACGTTTCACTATCTTTTCAAAAAATTTGAACCT TCTAGAGGTGAACTTGATTGAGCAAATTTATTAGGTACCATTTGACCTGC TAAATAAGCTTGTCTTCCTGCTTGAACAGCCAGATTCATAGTTGTTGCCA TTTCTATAGAAACAGGGAAAACCCCATATTCCCCGTCAGCTCACCGATTC ACACCATGATAAGATCATGATCACGATTAGACTGGGATTGGTACAAATAA CCTTACAACCTTACTCGGTTGATCCATACTCTCTGCTATGTGTGATGCCC GTATATATATGCATACCTGATACGGAATGAACGTGGGCAGTTTATTTTGT TGCGGTCGGTGGAATTGGTCACCCATGTACCCATGTTGCTGGTACTCATA CTGTACCCAACAATACCAGTTCTTCCTTGGGAAACCCTTGGCTGAACTGG TAATATTAATATAAAGCTGTCGAACGCGAGACTCCAAGCCTTTTGACGCG TCCTTTACTAGCGCAGTGCATTATGTATACACTACGTTCAGCCCTTGAAC TAACTAACATTGCGGGACAGGCTACTCCCCGCTGTGCCTTGAACCGAGCA CAGGCATAGGTCTAAGGCTACGCACTTTCAGAGCCTCCAGCCGACTTTGT AAAGGTTGGAGATCTTCTCCCGAACAAGGTTTACTGTGTTTACTCGGCAA GTAGCTTAGCGGTGTAATTATCCATTCGACAAAAAGCTATACCTGGGTTC GATCCCGAATGGCTCCGTGGTTTAAACATACTTGACAAAGTTGCCCTAGA ATATGTTCTCCGGAATAATTTCAGTTTTTGACTGAAATGCCTATGGCCTC AAGCCAAGCGTGTTTGTGTTTACGTACTAATAGTTTATAATTTGAGTGCG GCGTCAACCAACGGGACCACTATATTTTCACAGAGTTTTTAGGCGGGGTC TCGAGAGAACAAGATCCCGCAGGGTTTTTATAATATTTTAGACCTTTCGC GCTCTCACACTAGAGCTATATAAATACATTATTATAGAGCTATATAGTTA GCCGTCAACCAACGGGACCACTATATTTTCACAGAGTTTTTAGGCGGGGT CTCGAGAGAACAAGATCCCGCAGGGTTTTTATAATATTTTAGACCTTTCG CGCTCTCACACTAGAGCTATATAAATACATTATTATAGAGCTATATAGTT AGCTCCTGGCTACCCAAGCTCCTTTCTAGAACTACGGATAGAAATATAAA AATGTCAAGAGTAGGATTTGACGTCCGTGTAGCTGGATGGGTTGCTCTGT CGCTCATTCGTCCTTAGTTGAATATTTCCCACACAACCCCAATTTTTCGC ACGAGGTCGTCGGGTTTTGGATAGTATATAGGGAAAAAACTTTTCAACCA ACTTTGTTAAATTTGTGCTTTGGTTCGATTCATCAGACCTTCATGCGCAC TTTCTCGAGTTGTGGTTGACGAAAACAGCTACGAAGGTCATATGCTTGGT TTTTGCTCAAAATACTCGAGTCCAATCTCCCATCCGTTGGCCCTCCTCCC AAAACTACAGATAGCGATAACAACCCGAAGCTGGTGCACGTGAGCTATGA TCAAGCGAAGGGCAAAGATGACGGAGACGGAAAGGCGGGCGGCAAGCTCG TCGTCGAAAAGACGGATCAGGTTATGGGCAGTTGCGCCGGAGCTGGGTGA GTGCGGTAGTCCAGGGAACGCGTCAGAAGGACTTGGCGTCGTGTGTAGGC ACGGTTCGATTGAGTGGCCTTGTTTTTGCCTGATAGGGTCGCCGTAATCG TTGTTCAAGAGGAGCTATATCATCGTTTGAGATAGGTGATGGTGGACCTT GGCAGTCCTCGAGTACAAGCAGCAATGTTACAGTGATGTAGGAGTAAAAG ATACGCGAGAGGACCTTGTTTTACAAGAGAGGAGTTCAAGACCTGCATAG TTAGTTCCAGCGTCTTCTCGGAGGTGCGCACCCCGTCGATTCCGGCTGCA TCTGAAACAAAGCCTTCTCGCGGCGACTTATTTCGTCGTGAACGGTGCCG CCATTGCACTGCACCGTTTCCTTTTTTTTTCACCGTACAAGATCCGGCGA GTTTCACACGTACCGCGCGCACCGACGGACTGAGATTCATCGCGTGGCAG CTATGGAGGAATCAGCGAAAAAAGAAGAGGCTGCCGCCAAACTGCACGAG GCCATGGAAAAGGTATGGCCAACTACCCCCCCCCCGAGGCAGGTAGTTAC CGCGGCGCGCCCTTATCAGGTTCGAAATGTTAAGTGTATCAGTTTTCGTA ACGCGCTAATTCCTGTCAAGGCGGGAGCTTTTACACCTCCTAACTACCTC CACAAGACTAGGCATTTATCCTCGACCTTTGACGCTCTGACTGCCTGACT GCGTCGACTCGGTCGTGTGTTGACAGAGCCGGAAGGAGTGCGAGGAACGA ACACGGAAGAAGGCGGAAAAGCGCAAGCGCAAAAAGCAGGCCAAGCGTGA GGGCCCTGCAAAGCAAGCCAGAACGGAAGGCGCCCCTAAGGACTCGTCCT CGGGTTCCGCGGGCAGCGGTGGAAGCGCCAGCGACAGCGGTGCTACAGAG GAATTTGTGTATATCCCGTTGAAGGACCAGGCGGCGTTGGGAGGGGACGG GGGTGCCCCCGCGGCGTTCAAAAACGACGGAAGTTTCCTAGAAAGAATGA AGAAAGAGCTGGCGGGGAGGGATTTGGACTCGAGTGGCGGTAGCAAAGCG GTGGCCGCTTCATGAGTTGGCGAGTTTGGAAGGCGCTATGCAAGTTTCGC TGTTTCGCTACTTGCTCAAAGGTTGGTTTAAATGGAATTGTGTTTCTTGG GTGGCTCGAGCAAGCACGTGCCAGAGTGTTACTGCCATCACAAATCAAGT GCGTTGGACAGATGGAACGGCAGAGTGTGGAAACAAACGAGGCTAGATAC TCTGTCTGGGCCTCGAGTTCTAAACACTCAAGATGCTTTCTTGAATTTCT TTTCAGCTTGAATCCCGTATCAAGCACTACGGATGTTGCGTCTCACGCAA TGGACTATTAATAGTGGATCGAGTTAAACGAGGGGGCGTTGCGTTGGAAA GGCTCGATGCCTGTAAACAGTTCCCAAGAGGTCTTGAGTTGGATCAGTTG AAAACGCTTTCTGGGAATCTTGACGTCTTAGCAACA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig995:74201..84636+

>mRNA_A-nodosum_M_contig995.18.1 ID=mRNA_A-nodosum_M_contig995.18.1|Name=mRNA_A-nodosum_M_contig995.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at A-nodosum_M_contig995:74201..84636+ (Ascophyllum nodosum dioecious)
ATGGGGCGCTACACGACCGTACAAGCATATAGCGATAACAACCCGAAGCT
GGTGCACGTGAGCTATGATCAAGCGAAGGGCAAAGATGACGGAGACGGAA
AGGCGGGCGGCAAGCTCGTCGTCGAAAAGACGGATCAGGTTATGGGCAGT
TGCGCCGGAGCTGGATCCGGCGAGTTTCACACGTACCGCGCGCACCGACG
GACTGAGATTCATCGCGTGGCAGCTATGGAGGAATCAGCGAAAAAAGAAG
AGGCTGCCGCCAAACTGCACGAGGCCATGGAAAAGAGCCGGAAGGAGTGC
GAGGAACGAACACGGAAGAAGGCGGAAAAGCGCAAGCGCAAAAAGCAGGC
CAAGCGTGAGGGCCCTGCAAAGCAAGCCAGAACGGAAGGCGCCCCTAAGG
ACTCGTCCTCGGGTTCCGCGGGCAGCGGTGGAAGCGCCAGCGACAGCGGT
GCTACAGAGGAATTTGTGTATATCCCGTTGAAGGACCAGGCGGCGTTGGG
AGGGGACGGGGGTGCCCCCGCGGCGTTCAAAAACGACGGAAGTTTCCTAG
AAAGAATGAAGAAAGAGCTGGCGGGGAGGGATTTGGACTCGAGTGGCGGT
AGCAAAGCGGTGGCCGCTTCATGA
back to top