mRNA_A-nodosum_M_contig992.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig992.1.1
Unique NamemRNA_A-nodosum_M_contig992.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig992contigA-nodosum_M_contig992:956..2358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size817
Hectar predicted targeting categoryother localisation
Exons2
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870532.071144-UTR-A-nodosum_M_contig992:955..11021680870532.071144-UTR-A-nodosum_M_contig992:955..1102Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig992 956..1102 +
1680870532.1062791-UTR-A-nodosum_M_contig992:2138..23581680870532.1062791-UTR-A-nodosum_M_contig992:2138..2358Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig992 2139..2358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870532.0820942-CDS-A-nodosum_M_contig992:1102..11721680870532.0820942-CDS-A-nodosum_M_contig992:1102..1172Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 1103..1172 +
1680870532.0939083-CDS-A-nodosum_M_contig992:1758..21381680870532.0939083-CDS-A-nodosum_M_contig992:1758..2138Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig992 1759..2138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig992.1.1prot_A-nodosum_M_contig992.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig992 1103..2138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig992.1.1

>prot_A-nodosum_M_contig992.1.1 ID=prot_A-nodosum_M_contig992.1.1|Name=mRNA_A-nodosum_M_contig992.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=150bp
MQQTKRGNLSWSPIGQHGTTLSHHSTNFKAEGMQLDRRRARAGLNPSPCA
RESKARTGRFLREKLMSDYGLFSFYESHKERRTGKIRGDFSRMHKVLNGC
WLARRLHQLQGLHHHGPRNFNFPYFCTMASRNLDLLIKTGWSVFCPLCC*
back to top

mRNA from alignment at A-nodosum_M_contig992:956..2358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig992.1.1 ID=mRNA_A-nodosum_M_contig992.1.1|Name=mRNA_A-nodosum_M_contig992.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1403bp|location=Sequence derived from alignment at A-nodosum_M_contig992:956..2358+ (Ascophyllum nodosum dioecious)
AGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCCGAACGGGTG
CTGCCTTGGCAGATCACCATGGACCAATTAATATTCGCCTCTTTTCCCAC
ACCCACTATTGGTATGAAGTTGGCATGCTGAAAGTACCGGCGGAGGTATG
CAACAAACCAAACGAGGAAACTTATCCTGGTCCCCTATTGGTCAACATGG
AACTACTCTATCGCATCGTGAGTGACCAACGATCAGTGTTCCTTTCCCTC
GTCGACCGCGAAATCGAGTTTTTTGTGTACTAACGAATTAATCGCTCTCC
ACTTGACTTGTTGGGCATTTTTTTTTTGTGAGGAAAAATCCCAGTTCGCG
TAACTGCACCGAGATTCGAACTCAAGTCCCAACGTCAGAAGGTTTCGAGG
TTACCAACTAAACCACCGGGGCGACCGGTGCGCCAATACTATTATTAATA
ATATTAATGCTATGATATTAATACAGTAAAATAGCCAACACATTTTTCTC
TCAAGTCAAGATGTCATGTCAAGTCAAGGTTGTTTGTTGAAAAGGTGGGT
TCCGAAGACCTATGTCGTGGCAGGCGTCGAGTCGTTATTAGCCGCAGATA
TTGTACTGTAGTATTATTATTAGTAGTCACCGCTTCAGAGCAAAGTGGGC
ACCAGCACTCCTTCTAGTGAACAAATACTACATGATGACGCTCCAATCTC
CTTTTCGACCAGACGACCTCGATGCTTTAACTTTTCATCAGATGAAATAA
ATGTTATTTTTTTCCCCGGAAAAAACGCGACGTATCTCCGCTTTCACAAC
CAGATTCGACGAACTTCAAGGCGGAGGGCATGCAGCTCGATCGTCGACGA
GCCAGGGCAGGGCTGAACCCCTCGCCCTGTGCGCGAGAATCAAAGGCGCG
AACCGGAAGGTTTCTGAGGGAAAAGCTGATGTCTGACTACGGTCTATTTT
CTTTCTACGAGAGCCACAAGGAGCGGCGAACGGGCAAGATTCGTGGGGAT
TTTTCAAGGATGCACAAGGTTTTGAACGGATGCTGGCTCGCGCGCCGGCT
TCACCAGCTCCAAGGCCTCCACCACCATGGACCTCGGAATTTCAATTTTC
CTTATTTTTGTACGATGGCCTCGAGAAACTTGGACTTGTTGATCAAAACT
GGTTGGAGCGTATTCTGTCCGCTTTGTTGCTGAGAAACGCTGGTCGTGGG
TAGGCGATATGGAGTAAGAATGTTTGATGAACCGTTTTGACATTGAATTG
GTCGGTGCCATTACTTGTAGAGTCGCATAACTTTTTGTCGGGATTTGGAT
CCCTGTTGGTCTAAGTAGCGGGTTGTCACCATGATGTGACCCGTTGACCT
TAGTTGTTGTTGTTGTTGTTTTCACATTAAAAGTCGTTCCGGTCTCTACT
CAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig992:956..2358+

>mRNA_A-nodosum_M_contig992.1.1 ID=mRNA_A-nodosum_M_contig992.1.1|Name=mRNA_A-nodosum_M_contig992.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at A-nodosum_M_contig992:956..2358+ (Ascophyllum nodosum dioecious)
ATGCAACAAACCAAACGAGGAAACTTATCCTGGTCCCCTATTGGTCAACA
TGGAACTACTCTATCGCATCATTCGACGAACTTCAAGGCGGAGGGCATGC
AGCTCGATCGTCGACGAGCCAGGGCAGGGCTGAACCCCTCGCCCTGTGCG
CGAGAATCAAAGGCGCGAACCGGAAGGTTTCTGAGGGAAAAGCTGATGTC
TGACTACGGTCTATTTTCTTTCTACGAGAGCCACAAGGAGCGGCGAACGG
GCAAGATTCGTGGGGATTTTTCAAGGATGCACAAGGTTTTGAACGGATGC
TGGCTCGCGCGCCGGCTTCACCAGCTCCAAGGCCTCCACCACCATGGACC
TCGGAATTTCAATTTTCCTTATTTTTGTACGATGGCCTCGAGAAACTTGG
ACTTGTTGATCAAAACTGGTTGGAGCGTATTCTGTCCGCTTTGTTGCTGA
back to top