mRNA_A-nodosum_M_contig9908.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9908.2.1
Unique NamemRNA_A-nodosum_M_contig9908.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9908.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9908contigA-nodosum_M_contig9908:6957..7691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size404
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870529.6066122-CDS-A-nodosum_M_contig9908:6956..72501680870529.6066122-CDS-A-nodosum_M_contig9908:6956..7250Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9908 6957..7250 +
1680870529.6177652-CDS-A-nodosum_M_contig9908:7583..76911680870529.6177652-CDS-A-nodosum_M_contig9908:7583..7691Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9908 7584..7691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9908.2.1prot_A-nodosum_M_contig9908.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9908 6957..7691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9908.2.1

>prot_A-nodosum_M_contig9908.2.1 ID=prot_A-nodosum_M_contig9908.2.1|Name=mRNA_A-nodosum_M_contig9908.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MVNVRNRICRTDGCGKYALFGVAGTKAAEYCTQHAPDGMVNVRSRMCSIE
GCGKKASFGVAGAKRAEYCTQHAPDGMVNVKKSKCITEGWGKESSFGAKG
TKTAECCTQHAPDGTTNVITRKCRTKDCCKQASF
back to top

mRNA from alignment at A-nodosum_M_contig9908:6957..7691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9908.2.1 ID=mRNA_A-nodosum_M_contig9908.2.1|Name=mRNA_A-nodosum_M_contig9908.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at A-nodosum_M_contig9908:6957..7691+ (Ascophyllum nodosum dioecious)
ATGGTCAACGTCAGAAACAGAATATGTCGTACCGATGGCTGCGGCAAGTA
TGCCTTGTTTGGTGTGGCAGGTACGAAAGCGGCGGAGTACTGTACACAGC
ACGCACCGGATGGGATGGTCAACGTCAGGTCCAGAATGTGTAGTATCGAA
GGCTGCGGCAAGAAAGCGTCTTTTGGAGTGGCAGGTGCAAAAAGGGCGGA
GTACTGCACGCAGCACGCACCGGACGGAATGGTCAACGTCAAAAAGAGCA
AATGCATAACCGAAGGCTGGGGTAAGGAGTCGTCGTTCGGAGCGACAGAA
AACGGCGGAGTACCGGATGTACGAAAACACAGCACGCACCGGATGGGATG
GTCAACGTCAGGTCCAGAATGTGCACCGGATGGGATGGTCAACAGGTGCA
AAAAGGGCGGAGTACTGCACGCAGCACGCACCGGACGGAATGGTCAACGT
CAAAAAAGCAAATGCATAACCGTCGTTTGGAGCACCGGATGGGATGGTCA
ACGGTCCAGAATGTGTCGTACTGGATGGCTGCGGCAGTATGCCTTGTTTG
GTGTGGCAGGTACGAAAGCGGCGGAGTACACAACACGCACCGGAGGTCAA
CGTCGAAAACGGCGGAGTCGTGCTGGCAAAGGTACGAAAACGGCGGAGTg
ctgcACACAGCACGCACCGGACGGGACAACTAACGTCATTACCAGAAAGT
GTAGAACCAAAGACTGCTGTAAGCAAGCATCTTTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9908:6957..7691+

>mRNA_A-nodosum_M_contig9908.2.1 ID=mRNA_A-nodosum_M_contig9908.2.1|Name=mRNA_A-nodosum_M_contig9908.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig9908:6957..7691+ (Ascophyllum nodosum dioecious)
ATGGTCAACGTCAGAAACAGAATATGTCGTACCGATGGCTGCGGCAAGTA
TGCCTTGTTTGGTGTGGCAGGTACGAAAGCGGCGGAGTACTGTACACAGC
ACGCACCGGATGGGATGGTCAACGTCAGGTCCAGAATGTGTAGTATCGAA
GGCTGCGGCAAGAAAGCGTCTTTTGGAGTGGCAGGTGCAAAAAGGGCGGA
GTACTGCACGCAGCACGCACCGGACGGAATGGTCAACGTCAAAAAGAGCA
AATGCATAACCGAAGGCTGGGGTAAGGAGTCGTCGTTCGGAGCGAAAGGT
ACGAAAACGGCGGAGTgctgcACACAGCACGCACCGGACGGGACAACTAA
CGTCATTACCAGAAAGTGTAGAACCAAAGACTGCTGTAAGCAAGCATCTT
TC
back to top