mRNA_A-nodosum_M_contig99.83.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.83.1
Unique NamemRNA_A-nodosum_M_contig99.83.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.000e-53
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 2 
Query:    8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL---EDLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMY 427
            +PD+S EARTNA+RP ERLGSRGRFT+GVR W+GG PRD+ +    D G V+  S S   +P +S+ GETNV GGR+DERHGR+GSF+HGVVE  GGPL + A    E  +LW E GQ ENK+RRCGPSHFVAGVSI SGGMP+Y
Sbjct:  124 KPDLSAEARTNAIRPKERLGSRGRFTAGVRGWVGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 268
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BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.510e-52
Identity = 94/145 (64.83%), Postives = 110/145 (75.86%), Query Frame = 2 
Query:    8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL--EDLV-LWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMY 427
            +PD+S EARTNAVRP+ERLGSRGRFT+GVR+W GG PRD+ +    D G V+  S S   +P LS+  ETNV GGR DERHGR+GSF+HGVVE  GGPL + A    D+  LW E GQ ENK+RRCGPSHFVAGVSI SGGMP+Y
Sbjct:   66 KPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLGSFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 210
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BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 7.560e-49
Identity = 93/145 (64.14%), Postives = 109/145 (75.17%), Query Frame = 2 
Query:    8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL---EDLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMY 427
            +PD+S EAR NA RP+ERLGSRGRFT+GVR+W GG PRD+ +    D G V+  S S   +P LS+ GETNV GGR+DERHGR+GSF+HGVVE  GGPL + A    E   LW E GQ ENK+RRCGPSHFVAGVSI SGGMP+Y
Sbjct:  413 KPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 557
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BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.500e-27
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 2 
Query:   41 AVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL---EDLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMP 421
            A+RP+ERLGSRGRFTSG+R W GG P D+ +    D G V+  S S   +P LS+ GETNV GG++DE                GGPL + A    E  +LW E GQ E+K+RRCGPSH+V GVSI  G MP
Sbjct:  103 AIRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGKEDE--------------ARGGPLQVQAAFTSEVELLWREGGQREHKYRRCGPSHYVTGVSIPFGDMP 220
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BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.040e-21
Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 2 
Query:    8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVISVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGG-PLHMPALEDLVLWSEPGQT--ENKFRRCGPS 379
            +PD+S EARTNAVRP ERLG+RGRFT G R+W GG PRD+ +  E DHGKV+ VS+  KP+LS    TN +  R  ER G  G F  GV   +GG P  +P    L    +PG    E+   R  PS
Sbjct:   84 KPDLSAEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAV--RPTERLGSRGRFTAGVRRWAGGEPRDVP----LPRVCDPGTVLFESASERSRPS 204
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1I1_ECTSI3.000e-5364.14Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KBU2_9PHAE1.510e-5264.83Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D7FZE3_ECTSI7.560e-4964.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZP0_9PHAE1.500e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAW1_9PHAE8.040e-2148.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:858446..860008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1563
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870528.1328392-UTR-A-nodosum_M_contig99:858445..8584611680870528.1328392-UTR-A-nodosum_M_contig99:858445..858461Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 858446..858461 +
1680870528.152646-UTR-A-nodosum_M_contig99:858890..8600081680870528.152646-UTR-A-nodosum_M_contig99:858890..860008Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 858891..860008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870528.1427436-CDS-A-nodosum_M_contig99:858461..8588901680870528.1427436-CDS-A-nodosum_M_contig99:858461..858890Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 858462..858890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.83.1prot_A-nodosum_M_contig99.83.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 858462..858890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.83.1

>prot_A-nodosum_M_contig99.83.1 ID=prot_A-nodosum_M_contig99.83.1|Name=mRNA_A-nodosum_M_contig99.83.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=143bp
MSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVIS
VSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPALE
DLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMYTLASG*
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mRNA from alignment at A-nodosum_M_contig99:858446..860008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.83.1 ID=mRNA_A-nodosum_M_contig99.83.1|Name=mRNA_A-nodosum_M_contig99.83.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1563bp|location=Sequence derived from alignment at A-nodosum_M_contig99:858446..860008+ (Ascophyllum nodosum dioecious)
CACCCTCCAGCCCGACATGTCGGGTGAGGCCCGCACCAACGCCGTGCGCC
CCTCCGAGCGCTTGGGCTCCCGCGGCCGTTTCACGTCGGGTGTTCGCCAG
TGGCTGGGAGGTGCCCCACGCGACATGGCGATCATGGGTGAAACCGATCA
CGGCAAGGTTATTTCTGTGTCATCTGAGCTAAAACCTGAGCTGTCTTGGG
GTGGCGAAACCAACGTGATAGGGGGCAGGGACGACGAGAGGCACGGGCGC
ATTGGCTCTTTCGATCATGGCGTGGTTGAAGTGTCTGGGGGCCCGCTGCA
CATGCCCGCGCTCGAGGATCTGGTGCTCTGGAGCGAGCCCGGCCAGACGG
AAAACAAGTTTCGACGTTGCGGTCCCTCCCACTTTGTGGCGGGAGTTTCG
ATCTTTTCAGGTGGTATGCCGATGTACACACTTGCGTCGGGCTAAGACTG
AAGTTGAGTTTCCAACCACGGTTCAATTAAGATGGAGAGATATGAAGGAA
AACAAAGCGTCCTTTGTAGACACAAGAGCTTGCCATGACTGACCCGAATG
AAACTTGAGCGTACCTGCGGATTGGTTCATATGGATACCTGACACCCAGC
AGGGAGGGTAGTAGATTGATAATGCCTACCGTCTATTCTGCACGGAAGAA
GAAACGCTGTCGCTTGTAAGTTTCTATAAAAGGTTTGGTGCGCCGTGAGT
GGTCGGCGATTTCTAATACATTTTCTTTATTGCTACCCTAGTGCCCATAT
TAGATATGGGGTAGATTATTTGTGCTCTTCACACGGCGCGCTTGGAGTTT
TGCACAACATTGACCCTGTACTGTATGTAAGAAATCTACCAAAATCACTA
CGTCGTTCGATGTCAAGTGAAAAAGCAAACACCCACATTTCGGGACAGAA
GAGTTTGTAGAGTAGAGTTATGGAATGATTGGCAGAGCGCATTTTCTTAT
CACAACGCTGTAAAGAAGCGATCGGTTGCGAGGTCACCGGGACGAGATCA
CAAGGAAGACACATATACTAAATAGTAGAATGGTTCATAATATTTTTATA
CGCCAGCACGCGCAACGACTTACCGGTGGGCGCTTGGAGTTTTACATAAC
GTTGATCTTGTACTGTATATAAGTAATCTACCAAAATCACTACGTCGTTC
GATGTCAAGTGAAAAAACAAACACCCAAGTTTGGGGACAAAAGAGTTTGT
AGACTAGAGCTATGGGATGATTGTCCGAGAGAACTTTCTTATTACAACGC
TGTAAAGCAGCGATCGGTTGCGAGGTCCCCGGGATGAGACCGCAAGGACG
AGGAATATATTAGACTATAATGGTTGATGATATTTTTATACGCCGCCAGC
ATGCGCAACGACTTACCGGTGGGCTACCTTGAAGATAGGCTAGACGACGC
CTTGCATAGATGAGGGGGGGCGGTTTAAAAAGGAACATGAAGGAGTGGGA
CGATTGTGTCAATAGAGACGTGCGAGCTTTCGATACTTCGTGAAACTAGA
GAATCTTGATATTATAGTAAGGAGGGTAAATGTTCATGGGCATGCATGCA
TGTAGAAGGGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:858446..860008+

>mRNA_A-nodosum_M_contig99.83.1 ID=mRNA_A-nodosum_M_contig99.83.1|Name=mRNA_A-nodosum_M_contig99.83.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=429bp|location=Sequence derived from alignment at A-nodosum_M_contig99:858446..860008+ (Ascophyllum nodosum dioecious)
ATGTCGGGTGAGGCCCGCACCAACGCCGTGCGCCCCTCCGAGCGCTTGGG
CTCCCGCGGCCGTTTCACGTCGGGTGTTCGCCAGTGGCTGGGAGGTGCCC
CACGCGACATGGCGATCATGGGTGAAACCGATCACGGCAAGGTTATTTCT
GTGTCATCTGAGCTAAAACCTGAGCTGTCTTGGGGTGGCGAAACCAACGT
GATAGGGGGCAGGGACGACGAGAGGCACGGGCGCATTGGCTCTTTCGATC
ATGGCGTGGTTGAAGTGTCTGGGGGCCCGCTGCACATGCCCGCGCTCGAG
GATCTGGTGCTCTGGAGCGAGCCCGGCCAGACGGAAAACAAGTTTCGACG
TTGCGGTCCCTCCCACTTTGTGGCGGGAGTTTCGATCTTTTCAGGTGGTA
TGCCGATGTACACACTTGCGTCGGGCTAA
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