mRNA_A-nodosum_M_contig99.83.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI) HSP 1 Score: 190 bits (483), Expect = 3.000e-53 Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 2 Query: 8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL---EDLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMY 427
+PD+S EARTNA+RP ERLGSRGRFT+GVR W+GG PRD+ + D G V+ S S +P +S+ GETNV GGR+DERHGR+GSF+HGVVE GGPL + A E +LW E GQ ENK+RRCGPSHFVAGVSI SGGMP+Y
Sbjct: 124 KPDLSAEARTNAIRPKERLGSRGRFTAGVRGWVGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 268
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE) HSP 1 Score: 186 bits (473), Expect = 1.510e-52 Identity = 94/145 (64.83%), Postives = 110/145 (75.86%), Query Frame = 2 Query: 8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL--EDLV-LWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMY 427
+PD+S EARTNAVRP+ERLGSRGRFT+GVR+W GG PRD+ + D G V+ S S +P LS+ ETNV GGR DERHGR+GSF+HGVVE GGPL + A D+ LW E GQ ENK+RRCGPSHFVAGVSI SGGMP+Y
Sbjct: 66 KPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLGSFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 210
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI) HSP 1 Score: 186 bits (473), Expect = 7.560e-49 Identity = 93/145 (64.14%), Postives = 109/145 (75.17%), Query Frame = 2 Query: 8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL---EDLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMPMY 427
+PD+S EAR NA RP+ERLGSRGRFT+GVR+W GG PRD+ + D G V+ S S +P LS+ GETNV GGR+DERHGR+GSF+HGVVE GGPL + A E LW E GQ ENK+RRCGPSHFVAGVSI SGGMP+Y
Sbjct: 413 KPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 557
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.500e-27 Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 2 Query: 41 AVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVI--SVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGGPLHMPAL---EDLVLWSEPGQTENKFRRCGPSHFVAGVSIFSGGMP 421
A+RP+ERLGSRGRFTSG+R W GG P D+ + D G V+ S S +P LS+ GETNV GG++DE GGPL + A E +LW E GQ E+K+RRCGPSH+V GVSI G MP
Sbjct: 103 AIRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGKEDE--------------ARGGPLQVQAAFTSEVELLWREGGQREHKYRRCGPSHYVTGVSIPFGDMP 220
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE) HSP 1 Score: 100 bits (250), Expect = 8.040e-21 Identity = 62/127 (48.82%), Postives = 76/127 (59.84%), Query Frame = 2 Query: 8 QPDMSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVISVSSELKPELSWGGETNVIGGRDDERHGRIGSFDHGVVEVSGG-PLHMPALEDLVLWSEPGQT--ENKFRRCGPS 379
+PD+S EARTNAVRP ERLG+RGRFT G R+W GG PRD+ + E DHGKV+ VS+ KP+LS TN + R ER G G F GV +GG P +P L +PG E+ R PS
Sbjct: 84 KPDLSAEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAV--RPTERLGSRGRFTAGVRRWAGGEPRDVP----LPRVCDPGTVLFESASERSRPS 204 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig99.83.1 >prot_A-nodosum_M_contig99.83.1 ID=prot_A-nodosum_M_contig99.83.1|Name=mRNA_A-nodosum_M_contig99.83.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=143bp MSGEARTNAVRPSERLGSRGRFTSGVRQWLGGAPRDMAIMGETDHGKVISback to top mRNA from alignment at A-nodosum_M_contig99:858446..860008+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig99.83.1 ID=mRNA_A-nodosum_M_contig99.83.1|Name=mRNA_A-nodosum_M_contig99.83.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1563bp|location=Sequence derived from alignment at A-nodosum_M_contig99:858446..860008+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig99:858446..860008+ >mRNA_A-nodosum_M_contig99.83.1 ID=mRNA_A-nodosum_M_contig99.83.1|Name=mRNA_A-nodosum_M_contig99.83.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=429bp|location=Sequence derived from alignment at A-nodosum_M_contig99:858446..860008+ (Ascophyllum nodosum dioecious)back to top |