mRNA_A-nodosum_M_contig99.64.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.64.1
Unique NamemRNA_A-nodosum_M_contig99.64.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 4.670e-102
Identity = 305/610 (50.00%), Postives = 339/610 (55.57%), Query Frame = 2
Query:   53 MGDTRAWLEGELRRMLGFDEVEEIARFALDSYSVSQAAELKQYLEQFLGQSEEVRKL--CDELSSRRSVATSLSAPKTGSTRGP---HASAGEDFWGAGGSSGAATXXXXXXXXXXXXXXXXXXXXXKGRAKGKTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKLPTKTEATVASSKSSAXXXXXXXXXXXXXGKPRGARAKGRGGKVAAXXXXXXXXXXXXXATKVPERTEKAPTWSGVTCLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTSHNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPGDG---QAGGEVQDENEQGERLGAAAEEMARTGGVGVDAGGAFAGVGPRNG--------------APKPDQDPANHRPSLENTGLRGRAKEVYDVMRANLEKQGRR-RPGGNSKRG--GFRVA----EKSRVSLWRVQHDVDSDDVVRQNQIGGSSRGVGVGHEETDFERFGPVDEL 1795
            M  TRAW EGELRRMLGFDEVEEIARFALDS+ VSQ  EL+QYLEQFLGQS   + L   +  ++             G  RG     A+  EDFWG G +SG                          R K  +                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G   T T+  V   + S+         XXXX                 XXXXXXXX       +        P WSGVTCLCMGK HD +TNCT CGKIACV+EGGFGCSFCG  LP TGREPR +            V G        SAALKEAL RKDRL+LFDRTSASRTRVLDDQGDYFTSHNWLS+ ERE+GEA+EK  RD+AA RRGARRQVK+SIDIMGRRVIET    DG     GG     +E   R         +T GV +D G                         A  P     N R SLENTGLRGRAKEVYDVMRANL+K+ RR RPGG   +   G R+     E SRV+LWRVQHDVDSDD++RQ+Q  G             F +F P DEL
Sbjct:    1 MAKTRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLLTAEGGNNXXXXXXXXXXXXXGKGRGKVYQKAAVEEDFWGGGTTSG--------------------------RVKPAS--------------APSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAGGATGTATKGDVGGGRVSSKQPLASSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTTALPETLPAPAPVPEWSGVTCLCMGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSATSGG--------VDGAAGAAAPHSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKARRDDAASRRGARRQVKMSIDIMGRRVIETHPGEDGGLADGGGGEXXADEDASR---------KTQGVSLDFGSXXXXXXXXXXXXXXXXXXXXXAEEADTPGAGNGNQRLSLENTGLRGRAKEVYDVMRANLDKKSRRQRPGGAGGKAVAGSRIVGAVPEASRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADEL 552          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: D7FU14_ECTSI (Similar to thyroid hormone receptor interactor 4 isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU14_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 3.940e-94
Identity = 183/325 (56.31%), Postives = 217/325 (66.77%), Query Frame = 2
Query:  875 MGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTSHNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPGDGQA---GGEVQDENEQGERLGAAAEEMARTGGVGVDAGGAFA------GVGPRNGAPKPDQDPANHRPSLENTGLRGRAKEVYDVMRANLEKQGRRR----PGGNSKRGGF---RVAEKSRVSLWRVQHDVDSDDVVRQNQIGGSSRGVGVGHEETDFERFGPVDELGC 1801
            MGK HD +TNCT CGKIACV+EGGFGCSFCG  LP TGREPR +       + G+T          QSAALKEAL RKDRL+LFDRTSASRTRVLDDQGDYFTSHNWLS+ ERE+GEA+EKV RD+AA RRGARRQVK+SIDIMGRRVIET++PG+G+A   GGE + +++  ++    + +   +   G  A G+ A       +G   G         N R SLENTGLRGRAKEVYDVMRANL+K+ RRR     GG +  G      V E SRV+LWRVQHDVDSDD++RQ+Q  G             F +F P DEL C
Sbjct:    1 MGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSAASGGVDGAAGATA--------PQSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKVRRDDAASRRGARRQVKMSIDIMGRRVIETQDPGEGRADGGGGEGEADDDASKKTQGVSLDFGSSSAAGGGAAGSSAXXXXXGSIGEEAGTSGAGN--GNQRLSLENTGLRGRAKEVYDVMRANLDKKSRRRRPRGAGGKAVAGSRIVGAVPETSRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADELAC 314          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: UPI00077AD339 (activating signal cointegrator 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AD339)

HSP 1 Score: 105 bits (263), Expect = 2.720e-20
Identity = 67/164 (40.85%), Postives = 102/164 (62.20%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDS--EGSTVAGVE-AVDPTQSAA---LKEALARKDRLILFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIETKE 1333
            C C+G+KH  I NC  CG+I C++EG   C FCG+++  T  +   + +SK+     E      +E A + T S A   L+EA+A K++LI FD++   RT+V+DD+ DYF S  + WLS+ ER+    KE+  R++   R G+RRQ+K+++D  GRRVI+ KE
Sbjct:  134 CECLGQKHQLINNCIECGRIVCMQEGSGPCYFCGALVCSTEEKEILAQKSKKSQKLYEKLLTRSIEDASEETLSVADKGLQEAIAHKNKLIEFDKSGVRRTKVIDDECDYFASDSNRWLSKRERDTLRKKEEDLREK---RHGSRRQMKVTLDFAGRRVIDEKE 294          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: A7RPW2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPW2_NEMVE)

HSP 1 Score: 99.8 bits (247), Expect = 2.570e-18
Identity = 59/167 (35.33%), Postives = 100/167 (59.88%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVL------PVTGREPRRSGE------SKRGDSEGSTVAGVEAVDPTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIE 1324
            C C+G+KH  + NCT CG+I C +EG   C FCG+++       +  RE ++S +      S+    E  +   +   +      L +A+A K++L+ +D+TS  RT+V+DD+ DYF++  + WLS++E+E+   KE+  R   A+R G+RR +K+++D  GRRV+E
Sbjct:  125 CECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCSRAEQEIIARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQGLDKAIAHKNKLLEYDKTSVCRTKVIDDECDYFSTDGNKWLSKKEKEQLTVKEEELR---AKRHGSRRDMKITLDFAGRRVVE 288          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: A0A0C9R7G9_9HYME (Trip4_1 protein n=2 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9R7G9_9HYME)

HSP 1 Score: 99.0 bits (245), Expect = 4.120e-18
Identity = 60/160 (37.50%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  860 VTCLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTSHN--WLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIETKE 1333
            V C C  K H  I NC  CG+I C +EG   C FCG ++    ++   S  SK  D+  + +         +    K AL ++D+L+ FDR SA RTRV+DD+ DY+ S N  WLS+EER E E +E   ++   ++ G+R + K ++DI GR+V+E ++
Sbjct:  132 VKCDCEAKTHKLINNCLTCGRIVCEQEGAGPCFFCGELVCTPNQQNVLSTNSKNSDNLYNKL--------MEQKPSKAALKQRDKLLEFDRNSAKRTRVIDDESDYYQSSNSVWLSKEERAEMERREAEMKE---RKYGSRLEKKFTVDIFGRQVVEEED 280          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: A0A6P8GZP8_ACTTE (activating signal cointegrator 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8GZP8_ACTTE)

HSP 1 Score: 97.1 bits (240), Expect = 1.910e-17
Identity = 60/166 (36.14%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVL------PVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKE------ALARKDRLILFDRTSASRTRVLDDQGDYF-TSHNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIE 1324
            C C+ +KH  I NCT CG+I C +EG   C FCGS++       +  R+ ++S +  +   +      V+ +   ++ + +E      A+  K++L+ FD+TSA RT V+DD+ DYF T+  WLS EER + E KE+  R++   R G+RR +K+++D  GR+V+E
Sbjct:  134 CECLAQKHSLINNCTSCGRIVCEQEGEGPCYFCGSLVCTKAQKEILARDSKKSAKLLKQLMQQDFSDDVKKLQKXKNMSAQELEGYQRAVEHKNKLLEFDKTSARRTHVIDDEADYFSTNSKWLSTEERTKLEKKEEELREK---RHGSRRNMKVTLDFAGRKVVE 296          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: E9GBD9_DAPPU (ASCH domain-containing protein n=4 Tax=Daphnia TaxID=6668 RepID=E9GBD9_DAPPU)

HSP 1 Score: 96.3 bits (238), Expect = 3.040e-17
Identity = 59/158 (37.34%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVD---PTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFT--SHNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIE 1324
            C C   KH  + NC  CG++ C +EG   C FC   +    +E     +S    ++ +  +G   +D   P    A   A+A K++L+ FDRTS  RTRV+DD+ DYF   S+ WL+ ++R+    KEK  RD    R G+RRQ+K+++D  GR+VIE
Sbjct:  129 CECQASKHSLVRNCLECGRVICAQEGPGPCVFCTENMSACEKEALL--QSNNAPAQRTKQSGRRFLDGTAPLPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADSNKWLNPKQRDALRTKEKELRDS---RHGSRRQIKVTLDFAGRQVIE 281          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: A0A3M6TYR9_POCDA (ASCH domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TYR9_POCDA)

HSP 1 Score: 95.9 bits (237), Expect = 4.440e-17
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDS--EGSTVAGVEAVDPTQ-SAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTS--HNWLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIETKEP 1336
            C C+ +KHD + NCT CG+I C +EG   C F          +   +  SK+     E     G+E    T+    L+ A+A K+RLI +D++   RT+V+DD+ DYF S  + WLS+EERE  + KE   R++   R G+RRQ+K+++D  GR+V++  EP
Sbjct:  133 CECLAQKHDLVNNCTDCGRIVCKQEGSGPCFFXXXXXXTKEEQEILARNSKKSHKLHEKLLKQGIENDSCTKLGEGLQRAIAHKNRLIEYDKSGVRRTKVIDDECDYFASDTNKWLSQEEREVLKKKENEVREK---RYGSRRQMKVTLDFAGRKVVDENEP 291          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: UPI001ED8B920 (activating signal cointegrator 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B920)

HSP 1 Score: 95.5 bits (236), Expect = 6.240e-17
Identity = 61/154 (39.61%), Postives = 91/154 (59.09%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTSHN-WLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIE 1324
            CLC   KH  I NC  CG+I C +EG   C FCG+++      P   G    G +  + +  ++ +  T+S   +EA+AR+DRL+ +DRT   RT+V+DD+ DYF+S + WLS+EEREE   +E   +++   R  +R+   +S D  GRRVIE
Sbjct:  141 CLCQASKHGLINNCIQCGRIICEQEGPGPCLFCGNLV-----YPPGEGMEMPGIASETQIQYMKQM-ATKSPEWEEAMARRDRLLEYDRTCEKRTKVIDDEMDYFSSSSPWLSKEEREELRKRELELKEK---RDSSRKNKTISFDFAGRRVIE 285          
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Match: A0A7R9FI96_9NEOP (Hypothetical protein n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9FI96_9NEOP)

HSP 1 Score: 95.9 bits (237), Expect = 6.620e-17
Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = 2
Query:  866 CLCMGKKHDAITNCTVCGKIACVEEGGFGCSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKEALARKDRLILFDRTSASRTRVLDDQGDYFTSHN-WLSREEREEGEAKEKVHRDEAAQRRGARRQVKLSIDIMGRRVIETKEPGD 1342
            C C   KH  I NC  CG+I C +EG   C FC +++     +      SK+GD     + G    D       + AL  +DRL+ +DRTS  RTRV+DD+ DYF +++ WLS  ERE+   KEK  RD+   R  +R   ++++D  GR+V+E ++ GD
Sbjct:  166 CECQASKHRLINNCLKCGRIVCEQEGSGPCLFCYTLVCSQDEQTMLQSGSKQGDKLYQKLMGGAKQDT------ETALQHRDRLLEYDRTSERRTRVIDDESDYFAANSVWLSSAEREKMREKEKEQRDK---RHASRLDKRVTLDFAGRQVLEEEDGGD 316          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFY4_9PHAE4.670e-10250.00zf-C2HC5 domain-containing protein n=1 Tax=Ectocar... [more]
D7FU14_ECTSI3.940e-9456.31Similar to thyroid hormone receptor interactor 4 i... [more]
UPI00077AD3392.720e-2040.85activating signal cointegrator 1-like n=2 Tax=Acro... [more]
A7RPW2_NEMVE2.570e-1835.33Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A0C9R7G9_9HYME4.120e-1837.50Trip4_1 protein n=2 Tax=Fopius arisanus TaxID=6483... [more]
A0A6P8GZP8_ACTTE1.910e-1736.14activating signal cointegrator 1-like n=1 Tax=Acti... [more]
E9GBD9_DAPPU3.040e-1737.34ASCH domain-containing protein n=4 Tax=Daphnia Tax... [more]
A0A3M6TYR9_POCDA4.440e-1737.65ASCH domain-containing protein n=1 Tax=Pocillopora... [more]
UPI001ED8B9206.240e-1739.61activating signal cointegrator 1 n=1 Tax=Ischnura ... [more]
A0A7R9FI96_9NEOP6.620e-1737.50Hypothetical protein n=1 Tax=Timema tahoe TaxID=61... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:603984..607251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU14
PFAMszf-C2HC5
Model size2034
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.12e-95
EggNOG OGsKOG2845@1|root,KOG2845@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, C2HC5-type
Ec32 orthologEc-27_001060.1
Descriptiontranscription coactivator activity
Cds size1755
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870527.244146-UTR-A-nodosum_M_contig99:603983..6040351680870527.244146-UTR-A-nodosum_M_contig99:603983..604035Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 603984..604035 +
1680870527.2969975-UTR-A-nodosum_M_contig99:607024..6072511680870527.2969975-UTR-A-nodosum_M_contig99:607024..607251Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 607025..607251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870527.2625773-CDS-A-nodosum_M_contig99:604035..6040951680870527.2625773-CDS-A-nodosum_M_contig99:604035..604095Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 604036..604095 +
1680870527.27322-CDS-A-nodosum_M_contig99:604936..6050321680870527.27322-CDS-A-nodosum_M_contig99:604936..605032Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 604937..605032 +
1680870527.2838643-CDS-A-nodosum_M_contig99:605425..6070241680870527.2838643-CDS-A-nodosum_M_contig99:605425..607024Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 605426..607024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.64.1prot_A-nodosum_M_contig99.64.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 604036..607024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.64.1

>prot_A-nodosum_M_contig99.64.1 ID=prot_A-nodosum_M_contig99.64.1|Name=mRNA_A-nodosum_M_contig99.64.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=585bp
MGDTRAWLEGELRRMLGFDEVEEIARFALDSYSVSQAAELKQYLEQFLGQ
SEEVRKLCDELSSRRSVATSLSAPKTGSTRGPHASAGEDFWGAGGSSGAA
TRAATAPGGGARGQEHERKSAAKGRAKGKTYKKSTTEEEDFWGGGTTGGT
TSGGQSSSTKSATNRPTPAAASAPRSARNSGGNQKGSAGGGSGKLPTKTE
ATVASSKSSARQEQGTSSAAASAGKPRGARAKGRGGKVAAGARTPGPAKT
VPSATKVPERTEKAPTWSGVTCLCMGKKHDAITNCTVCGKIACVEEGGFG
CSFCGSVLPVTGREPRRSGESKRGDSEGSTVAGVEAVDPTQSAALKEALA
RKDRLILFDRTSASRTRVLDDQGDYFTSHNWLSREEREEGEAKEKVHRDE
AAQRRGARRQVKLSIDIMGRRVIETKEPGDGQAGGEVQDENEQGERLGAA
AEEMARTGGVGVDAGGAFAGVGPRNGAPKPDQDPANHRPSLENTGLRGRA
KEVYDVMRANLEKQGRRRPGGNSKRGGFRVAEKSRVSLWRVQHDVDSDDV
VRQNQIGGSSRGVGVGHEETDFERFGPVDELGCN*
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mRNA from alignment at A-nodosum_M_contig99:603984..607251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.64.1 ID=mRNA_A-nodosum_M_contig99.64.1|Name=mRNA_A-nodosum_M_contig99.64.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3268bp|location=Sequence derived from alignment at A-nodosum_M_contig99:603984..607251+ (Ascophyllum nodosum dioecious)
GGAAACAAACGGCGGAACTTGACACGAGGCGTTCGAGATACTCAAGTTAG ACATGGGCGACACTAGGGCGTGGTTGGAGGGCGAGCTGAGAAGGATGCTG GGGTTCGACGAGGTACGAAAACTTTGAGGTCACGAGGGAGGCATACTAAT ATTCAATTAAGAGTAAGAGTACGAATAAAAAATGTGAACTTAGGACACAA GCTGTTACTGTCGTACTGCCGTACAGAACAGTACAGTACAGTACACTCTC TCGGAAAGCGTTAGGCGTGCGCAAGTAAAAAGTAAAATCATGGATACTGC TGGTATTAATATGAATAGTGTAATATAGTAGATAGGTTGACGAGGTGTCC CAAGAGTGCTCAACTTGCATCACGCGTTAAAAAACAGCCAAAAAGTACCA CCGTAGAAGTTAACGGGCAGCGTTACAGTACCTGTAGATGGGAACTGGTT GCATGGCACATCGAGAGTGAGGACCACGAGTTGTGCATTAGACAAGTAAT GGTACAAAAGTATTAGAATATATGCAACCCTCAACCCTAACATTCTACGC TCAACCCCAAGGACACCAGCGCACCCATTACTGGATGCTTTTCTTGTCCT GCTGTACAATTAATAGCTCTTACTAGGTATCTACTGGATTGCTGCCACTA ATCGTTTTGATAGTATCCTTCCCAGTAGCTCTACGGAAGTACAGCACCTT GGGCCTGCTGTTGTAGTTCGCGCTCTAAAGCGTATCATAGACCAAATTCT TTCTATAGGTCTATTAATAGGCATCCCACTTGTTCCAGCATTTGATTGAA TTCTGGAAGTGTTGATGTAGATGTTCTATACACAGTACATTATACACTTG GGTCGTGCTACCGAGGCACGGATCGGCTCAAGGCTTTGAAACACCGTCTT CATAGCATCTCTGCGACTCTCTGAACGCTTGCTTCCGTTGCTCCTGCCAA AAGGTGGAAGAGATCGCGAGGTTTGCGCTCGACAGCTATTCGGTGTCGCA GGCCGCTGAACTCAAGCAGTACCTGGAGCAGTTCCTCGGTCAATCAGAGG TGAGCGCAACGCTTTGTGGTGTATTGTTCTTACATTGATCGCAGAACTCT AATCTGAGCCGACCGGAGATTCGCCCTGCTGCTGTTCCCTGTACCGGCGG TCTCATACTTGTGTGTTGTTGAGAGCAACGTTCGCTCCGCTGTGGGCCCA GGATGAAATGCTCTCATCTCGAATTGTAGGTCGTGCGCCTCTTAGAGTCA AGCTCGTGTGAGTGTCCATCCATCCGAGTAGGGTGGAAAAAATTGCGAGG GCTACCGCTGTTGATGCCCTAGATACCACCCATGGGACCGGAGTCCTGGG GGGCACTAGCTTTACGCTCTCAGGCTTCCTTTCACAGCGAAACAAACGAC TTCAAGATTATTTGCACTTGCTCGGAATCTCGCGCCTCCTAGGAAGTACG AAAACTCTGCGACGAGCTCTCCTCGCGGCGGAGCGTAGCAACCTCGTTGT CAGCACCGAAGACGGGTTCGACAAGAGGACCGCATGCTAGCGCGGGGGAG GATTTCTGGGGAGCGGGGGGAAGCTCTGGCGCAGCTACTAGGGCGGCGAC AGCACCCGGGGGAGGAGCAAGAGGGCAAGAGCACGAGCGAAAGTCGGCGG CCAAGGGCAGGGCAAAGGGAAAGACTTACAAAAAATCCACGACGGAGGAA GAAGACTTCTGGGGGGGGGGTACGACCGGCGGCACAACCTCTGGTGGCCA GTCATCATCCACGAAGTCGGCCACAAATCGACCTACTCCCGCCGCAGCGT CAGCTCCTCGCTCAGCGAGGAACTCCGGGGGCAACCAGAAGGGGAGCGCT GGTGGTGGCAGCGGCAAACTCCCGACCAAGACGGAAGCGACAGTGGCCTC ATCGAAATCAAGCGCACGCCAGGAACAGGGCACGTCGTCGGCCGCGGCCT CCGCTGGCAAGCCAAGGGGCGCGAGGGCAAAAGGGCGGGGCGGGAAAGTG GCAGCCGGAGCCCGAACGCCAGGACCTGCAAAGACTGTTCCTTCCGCAAC TAAGGTACCCGAACGGACGGAGAAGGCCCCGACGTGGTCGGGAGTGACTT GCCTGTGCATGGGAAAGAAGCATGACGCGATCACAAACTGTACTGTGTGC GGGAAGATCGCGTGCGTGGAGGAAGGCGGGTTCGGCTGCTCATTCTGCGG GTCGGTGCTGCCCGTGACGGGCCGCGAGCCGCGCCGCTCCGGTGAGAGTA AAAGAGGCGATAGCGAAGGTTCTACGGTTGCCGGGGTCGAGGCAGTGGAC CCGACACAGTCGGCTGCGCTGAAGGAGGCGCTCGCTCGCAAGGACAGACT CATTTTGTTCGATCGGACGTCGGCGTCGAGGACGCGCGTACTGGACGACC AGGGGGACTACTTCACGAGCCACAACTGGCTGTCGCGGGAGGAGCGCGAG GAAGGAGAGGCCAAGGAAAAGGTCCACCGAGATGAAGCTGCCCAGCGCCG GGGAGCGAGGCGGCAGGTGAAGCTCTCCATCGATATCATGGGGCGGAGGG TGATCGAGACTAAAGAGCCGGGGGACGGACAGGCTGGGGGGGAAGTGCAA GACGAAAACGAACAAGGCGAACGATTGGGGGCTGCGGCGGAAGAGATGGC CCGCACTGGCGGCGTCGGAGTTGATGCGGGCGGCGCATTTGCCGGCGTGG GCCCTCGCAACGGCGCCCCAAAGCCTGATCAAGATCCAGCCAATCATAGG CCATCTCTAGAAAACACCGGCCTCCGAGGTCGGGCGAAAGAGGTATACGA CGTTATGCGGGCCAATCTGGAGAAGCAGGGGCGTAGGAGACCCGGTGGGA ACTCCAAGCGAGGCGGTTTCAGGGTGGCGGAGAAATCGCGCGTTAGCTTG TGGCGCGTTCAGCACGATGTGGATTCGGACGACGTCGTTAGGCAAAACCA GATCGGAGGCTCTAGTCGAGGGGTCGGAGTTGGCCACGAGGAGACCGACT TCGAACGATTCGGGCCCGTAGATGAATTGGGGTGCAATTAGTAAAGACAC CGCTCATGCTCGCAGTATGATCGCGGGATGAGCAACATACAGAATCGACT GGTGTTTTCAGACGTCCTTTTATCCTCCATCCATCTTGAAACACACTCGG CGCGGAATTCGGAAGATGGTAATGCCGCGAAAGCACGATGGTGAACGTGT TCTTGCGGCCAACAGCCGACGACAGGGCGCAAGCAGGATCCGTCGCTCTC GATCATCCCACGCGCGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:603984..607251+

>mRNA_A-nodosum_M_contig99.64.1 ID=mRNA_A-nodosum_M_contig99.64.1|Name=mRNA_A-nodosum_M_contig99.64.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1755bp|location=Sequence derived from alignment at A-nodosum_M_contig99:603984..607251+ (Ascophyllum nodosum dioecious)
ATGGGCGACACTAGGGCGTGGTTGGAGGGCGAGCTGAGAAGGATGCTGGG
GTTCGACGAGGTGGAAGAGATCGCGAGGTTTGCGCTCGACAGCTATTCGG
TGTCGCAGGCCGCTGAACTCAAGCAGTACCTGGAGCAGTTCCTCGGTCAA
TCAGAGGAAGTACGAAAACTCTGCGACGAGCTCTCCTCGCGGCGGAGCGT
AGCAACCTCGTTGTCAGCACCGAAGACGGGTTCGACAAGAGGACCGCATG
CTAGCGCGGGGGAGGATTTCTGGGGAGCGGGGGGAAGCTCTGGCGCAGCT
ACTAGGGCGGCGACAGCACCCGGGGGAGGAGCAAGAGGGCAAGAGCACGA
GCGAAAGTCGGCGGCCAAGGGCAGGGCAAAGGGAAAGACTTACAAAAAAT
CCACGACGGAGGAAGAAGACTTCTGGGGGGGGGGTACGACCGGCGGCACA
ACCTCTGGTGGCCAGTCATCATCCACGAAGTCGGCCACAAATCGACCTAC
TCCCGCCGCAGCGTCAGCTCCTCGCTCAGCGAGGAACTCCGGGGGCAACC
AGAAGGGGAGCGCTGGTGGTGGCAGCGGCAAACTCCCGACCAAGACGGAA
GCGACAGTGGCCTCATCGAAATCAAGCGCACGCCAGGAACAGGGCACGTC
GTCGGCCGCGGCCTCCGCTGGCAAGCCAAGGGGCGCGAGGGCAAAAGGGC
GGGGCGGGAAAGTGGCAGCCGGAGCCCGAACGCCAGGACCTGCAAAGACT
GTTCCTTCCGCAACTAAGGTACCCGAACGGACGGAGAAGGCCCCGACGTG
GTCGGGAGTGACTTGCCTGTGCATGGGAAAGAAGCATGACGCGATCACAA
ACTGTACTGTGTGCGGGAAGATCGCGTGCGTGGAGGAAGGCGGGTTCGGC
TGCTCATTCTGCGGGTCGGTGCTGCCCGTGACGGGCCGCGAGCCGCGCCG
CTCCGGTGAGAGTAAAAGAGGCGATAGCGAAGGTTCTACGGTTGCCGGGG
TCGAGGCAGTGGACCCGACACAGTCGGCTGCGCTGAAGGAGGCGCTCGCT
CGCAAGGACAGACTCATTTTGTTCGATCGGACGTCGGCGTCGAGGACGCG
CGTACTGGACGACCAGGGGGACTACTTCACGAGCCACAACTGGCTGTCGC
GGGAGGAGCGCGAGGAAGGAGAGGCCAAGGAAAAGGTCCACCGAGATGAA
GCTGCCCAGCGCCGGGGAGCGAGGCGGCAGGTGAAGCTCTCCATCGATAT
CATGGGGCGGAGGGTGATCGAGACTAAAGAGCCGGGGGACGGACAGGCTG
GGGGGGAAGTGCAAGACGAAAACGAACAAGGCGAACGATTGGGGGCTGCG
GCGGAAGAGATGGCCCGCACTGGCGGCGTCGGAGTTGATGCGGGCGGCGC
ATTTGCCGGCGTGGGCCCTCGCAACGGCGCCCCAAAGCCTGATCAAGATC
CAGCCAATCATAGGCCATCTCTAGAAAACACCGGCCTCCGAGGTCGGGCG
AAAGAGGTATACGACGTTATGCGGGCCAATCTGGAGAAGCAGGGGCGTAG
GAGACCCGGTGGGAACTCCAAGCGAGGCGGTTTCAGGGTGGCGGAGAAAT
CGCGCGTTAGCTTGTGGCGCGTTCAGCACGATGTGGATTCGGACGACGTC
GTTAGGCAAAACCAGATCGGAGGCTCTAGTCGAGGGGTCGGAGTTGGCCA
CGAGGAGACCGACTTCGAACGATTCGGGCCCGTAGATGAATTGGGGTGCA
ATTAG
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