mRNA_A-nodosum_M_contig99.62.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig99.62.1
Unique NamemRNA_A-nodosum_M_contig99.62.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 9.310e-140
Identity = 285/628 (45.38%), Postives = 363/628 (57.80%), Query Frame = 2
Query:   89 LVGCGDSSFCQLPCECPCSSWHREGTDGNY----GHCADVRQGDTLKISEVSCGTSVAVALVSPPGTGRERASV--------FEWGTGMYGERLSSAVKTEAEKPGTKTSDHQIVLLSSYRHPVEISPLPLLQLRLRS-------IACGAHFVVAAVETGGCIAWGGGREPR-ALGRGGCGSCSSSTCMSTGKSSITPPL--PEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHG--SCTPMMVQFPSAASN---DTPAKHENSSEASDNATSPVLARSV--------ACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAAS--------FPSSTRD-------------GEPKIDDRRT---HQDAEVRPYPGLVDGLDFVLSEHDE-VVSVGCGSRYTLALSREKRVLVWGQISPSDDDRIRRVGLGSFGSGGVSSRPP-----------QEVSP-CRPRELKPEDLLRASA--SAVCDEKLE-RCRGHVGEDRGPRGAGRGHGGEGNGSLWRVSSAGCGPWYVVLGLEE 1747
            LVG GDSSFCQ+PC  P +SW R+  D N         DVR+  T KIS+++CG +  +A V+        +++         EWGTG+YGERLS+  +T   + G + +       S   HP +++ L  L L LRS       IACGAHFVVA++E GGCI+WGGGRE R ALGRG CG+C    C + G +   PPL  P  +   WV +PL  GG +V  LAAGDDH +AV  DG+AWAWGRGDCGQLG G+P +      G  +C PM VQ PS AS    D       SS A+  AT       V        ACGRDHSA++T DGR+WTFGSGL+GQLGLGTVGE +  P+VVDAL GVGTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGWARFGALG  P    S          S+T D             G+ K+   R+    ++ EVRPYPGLVD +D +L++ D+ +VSV CG+RYT+A S + R  VWGQ++P       R G                         + + P   PRE+KP +LL+ +A  ++  DE  E RC   VG  +G R    G   EG+ S WRVS+ GCGPW+VV GL+E
Sbjct:    8 LVGVGDSSFCQIPC--PWASWSRQTADANSKSHPSRNEDVRRVQT-KISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLST--ETSVPQQGDERNH-----ASFLNHPAQVA-LSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ--CRN-GSTPAAPPLSYPSSSKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGADCDGGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVTGSPLRPQQDTTASATGDSATINDSGASPASGKRKLKSARSTPAEEEGEVRPYPGLVDEMDDILADDDDQLVSVSCGARYTVATSTKGRAFVWGQVAPPLQHYGGRGGXXXXXXXXXXXXXXXXXXXXXXXXGRRLGPFSAPREMKPAELLQDAAPPNSQMDEGGEGRCCCEVGSAKGLR---AGADDEGD-SRWRVSAVGCGPWFVVFGLQE 617          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 428 bits (1100), Expect = 5.160e-139
Identity = 290/646 (44.89%), Postives = 366/646 (56.66%), Query Frame = 2
Query:   89 LVGCGDSSFCQLPCECPCSSWHREGTDG---NYGHCA--DVRQGDTLKISEVSCGTSVAVALVS-------------------PPGTGRERASVFEWGTGMYGERLSSAVKTEAEKPGTKTSDHQIVLLSSYRHPVEISPLPLLQLR-----LRSIACGAHFVVAAVETGGCIAWGGGREPR-ALGRGGCGSCSSSTCMSTGKSSITPPL--PEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGS-CTPMMVQFPSAASNDTPAKHENSSEASDNATSP----------------------VLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPSSTRD---------------------GEPKIDDRRTH---QDAEVRPYPGLVDGLDFVLSEHDE-VVSVGCGSRYTLALSREKRVLVWGQISPSDDDRIRRVGLGSFGSGGVSSR---------PPQEVSPCR-PRELKPEDLLR--ASASAVCDEKLE-RCRGHVGEDRGPRGAGRGHGGEGNGSLWRVSSAGCGPWYVVLGLEE 1747
            LVG GDSSFCQ+PC  P +SW R+  D    ++G  +  DV +  T KIS+++CG +  +A V+                   PP      A + EWGTG+YGERLS+  +T   + G + +    +   ++  PV  S LPL  LR     +R IACGAHFVVA++E GGCI+WGGGRE R ALGRG CG+C        G +    PL  P  ++  WV +PL  GG +V  LAAGDDH +AV  DG AWAWGRGDCGQLG G+P        GS C PM VQ PS AS  TP      +  S  A                          L    ACGRDHSA++T DGR+WTFGSGL+GQLGLGTVGE +  P+VVDAL GVGTMR DG+FTG+ +VACGAWHTAA+STTGD+YTWGWARFGALG  P  A       +D                     G+ K++   +    ++ EVRPYPGLVDG+D +L++ D+ +VSV CG+RYTLA S + R  VWGQ++P       R G    G  G S R         PP  + P   PRE+KP DLL+  A +++  DE+ E RC   VG  RG R AG    G+   S W+VS+ GCGPW+VV GL+E
Sbjct:    8 LVGVGDSSFCQIPC--PWASWSRQTADEKGKSHGSSSNDDVCRVQT-KISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPP------AYLLEWGTGLYGERLST--ETSVPQQGDERNQESFL---NHPAPVAFSSLPL-GLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQ---CHDGSTPAARPLSYPSSSNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSPDGVDYDGGGSACVPMAVQLPSPASG-TPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGFHRRPQQDTTASVIGDSATINDSGASPASGKRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQQYGGRGGGEQKGGDGSSVRGIDTGDRKGPP--LGPFSVPREMKPADLLQDAAPSNSQTDERREGRCYCEVGSPRGVR-AGAVDKGD---SRWKVSTVGCGPWFVVFGLQE 628          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: A0A329S126_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S126_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.330e-30
Identity = 102/327 (31.19%), Postives = 149/327 (45.57%), Query Frame = 2
Query:  455 RLRSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSITPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPSSTRDGEPKIDDRRTHQDAEVRPYPGLVDGLDFVLSEHDEVVSVGCGSRYTLALSREKRVLVWG 1435
            R +++ACG++ V+A  ++G  +AWG     +                +  K    P + EF        P++A  L++V +AAG  H++AV + G  WAWG    GQLG G+  E    LH   TP +V  P+                       V  + +A G  HSA+++  G ++TFG GLY QLG G+  ++  +P VVDAL G+ +         I  VACG WHTAA++ +GDLYTWGW +   LG     A                       +V P    V        +  +V +V CG+R+TLAL R+  V  WG
Sbjct:   77 RCKAVACGSNHVLALTDSGRIVAWGWNSSGQVA------------AAAVEKVVCVPTVVEF--------PIEA--LQIVEVAAGGMHSLAVESSGRVWAWGCNVYGQLGIGSETEQ---LH---TPRLVALPA----------------------DVRVQHIAAGWAHSALISMSGEVFTFGWGLYNQLGHGSTQDKL-QPVVVDALRGLDS--------DIVQVACGNWHTAALTASGDLYTWGWGKDSQLGLEASVAT----------------------QVLPQVVNVSASPASSEDAQDVTAVACGNRFTLALCRDGSVQYWG 322          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: A0A0W8CI08_PHYNI (E3 ubiquitin-protein ligase HERC4 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CI08_PHYNI)

HSP 1 Score: 129 bits (323), Expect = 4.910e-29
Identity = 122/441 (27.66%), Postives = 183/441 (41.50%), Query Frame = 2
Query:  131 ECPCSSWHREGTDGNYGHCADVRQGDTLKISEVSCGTSVAVALVSPPGTGRERASVFEWGTGMYGERLSSAVKTEAEKPGTKTSDHQIVLLSSYRHPVEISPLPLLQLRLRSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSITPPL--PEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPSSTRDGEPKIDDRRTHQDAEVRPYPGLVDGLDFVLSEHDEVVSVGCGSRYTLALSREKRVLVWGQISP 1447
            EC C S    G +G +  C        LK   V  G +  + +++  G       V  WG   YGER                 +H+ V       PV+++    +  R +++ CG++ V+A  ++   IAWG  R  +                  G ++I   +  P F     V  P++   +E+V +AAG  H++AV + G  WAWG    GQLG    ++     H   TPM+V  P+                       V  + VA G  HSA+++  G ++TFG GLY QLG G+  +   +P +VDAL G+ +         I  VACG WHTAA++ +GDLYTWGW +   LG     A                       +V P    V        +  +V  V CG+R+TL L ++  +  WG  SP
Sbjct:    2 ECRCVSISANG-NGLFSECVSPTD---LKFVAVDGGDTFTIGVLADSG------EVVGWGKAFYGER---------------PDEHKNV-------PVKLN----VPERCKTVGCGSNHVLALTDSSRVIAWGWNRSGQ-----------------VGAAAIEDVVRVPTF-----VKFPIE--DVEIVEVAAGGMHSLAVDSRGRVWAWGCNTYGQLGIDFEVKQ---QH---TPMLVALPA----------------------DVRVQHVAAGWAHSALISTSGEVFTFGWGLYNQLGHGST-QNEHEPVLVDALRGLDS--------DIVQVACGNWHTAALTASGDLYTWGWGKDSQLGPEASVAT----------------------QVLPRVVNVSARSETTEDTQDVTDVACGNRFTLVLCQDGSIQCWGPKSP 323          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: D0N7V0_PHYIT (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7V0_PHYIT)

HSP 1 Score: 117 bits (292), Expect = 4.870e-26
Identity = 85/253 (33.60%), Postives = 122/253 (48.22%), Query Frame = 2
Query:  455 RLRSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSI-TPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGAL 1210
            R +++ACG++  +   ++G  +AWG                SS    +  K  + TP + EF  A           +E+V +AAG  H++AV + G  WAWG    GQLG G  ++    LH   TP +V  P+                       V A+ +A G  HSAV+   G ++TFG GLY QLG  T  +   +P +VDAL+G+ +         I  VACG WHTAA++ +GDLYTWGW + G L
Sbjct:   40 RCKAVACGSNHALVLTDSGRVVAWGWN--------------SSGQVAAASKEMVQTPTIVEFPKA-----------VEIVAVAAGGMHSLAVDSCGRVWAWGCNTYGQLGIGCEMDK---LH---TPSLVALPA----------------------DVHAQRIAAGWAHSAVILTSGEIFTFGWGLYNQLGHSTT-QSELQPVIVDALQGLDS--------NIVQVACGNWHTAALTESGDLYTWGWGKDGQL 230          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: A0A3M6VGR6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGR6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.080e-25
Identity = 93/328 (28.35%), Postives = 144/328 (43.90%), Query Frame = 2
Query:  461 RSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSITPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPSSTRDGEPKIDDRRTHQDAEVRPYPGLVDGLDFVLSEHD--EVVSVGCGSRYTLALSREKRVLVWGQ 1438
            +++ACG++ V+A  ++G  +AWG  R  +             T  +  +    P   EF      + P     + +V +AAG  H++A+   G  WAWG    GQLG G+ ++   +L     P                            S V  + +A G  HSA+++  G ++TFG GLY QLG G+  +   +P +VDAL G+ +         +  VACG WHTAA++ +GDLYTWGW + G L      +                        ++  P +V  L    +  D  +V+ + CG+RYTLA  R+  V  WGQ
Sbjct:  108 KAVACGSNHVLALTDSGHVVAWGWNRSGQVA-----------TAATEKQIVRVPTAVEFP-----IAPQRNVPVRIVEVAAGGMHSMALDTCGRVWAWGCNVYGQLGTGSDMKKVDVLSHVALP----------------------------SEVHVKHIAAGWAHSALISTTGEVFTFGWGLYNQLGHGSPQDEL-RPVIVDALRGLDS--------DVVQVACGNWHTAALTASGDLYTWGWGKDGQLAHEASVS------------------------MQVLPRVVSVLSSPAASDDAKDVMDIACGNRYTLAACRDGSVQWWGQ 358          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.660e-25
Identity = 94/279 (33.69%), Postives = 131/279 (46.95%), Query Frame = 2
Query:  416 HPVEISPLPLL-QLRLRSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSITPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAV-CADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPS 1246
            H   +SPL     L +RSIACG   V+    TG C+ WG      A                      T P P       VV P  +  + V  +AAG+ H++A+  A G  ++WG    GQ    +  +  A++ G   P                                +R +A G  HSAV++ DG L+TFG GLY QLG GT     + P+ V +LEGVG ++ +  FTG++ VACGAWHTAA++TTGD+YTWGW + G LG     + +FP+
Sbjct:   53 HGESLSPLTSRWSLSVRSIACGGSHVLLCTTTGECLWWGDQFNTNA----------------------TQPKP-------VVFP--SPDVFVTQVAAGEAHSLALDAATGRVFSWGSNAFGQC---SVTKDEAIVTGVPVPQ-------------------------------SRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTT-NNVFTPTRVRSLEGVGQLQRNH-FTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLGHATLASQAFPT 264          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: A0A0P1AA17_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AA17_PLAHL)

HSP 1 Score: 114 bits (286), Expect = 3.590e-24
Identity = 97/341 (28.45%), Postives = 152/341 (44.57%), Query Frame = 2
Query:  440 PLLQLRLRS----IACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSITPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPSSTRDGEPKIDDRRTHQDAEVRPYPGLVDGLDFVLSEH--DEVVSVGCGSRYTLALSREKRVLVWGQIS 1444
            PL++++++     + CG + V+A   +G   AWG  R  +             T   + +   TP   +F              + +V +AAG  H++A+ +DG  WAWG    GQLG G  +    L     TP +V+ P+                       V A+S+A G  H+A+++  G ++TFG GLY QLG G+      +P  V+AL G+ +         I+ VACG WHTAA++ +GDLYTWGW R G LG                 P++              P +V+ L    + +  D++ ++ CG+R T+AL +   V  WG  S
Sbjct:   46 PLVKIKIKEPCNKVVCGCNHVLALACSGCVYAWGWNRSGQV------------TAAKSDEVVHTPTKVQFF----------LHAVYIVEVAAGGMHSLALDSDGRVWAWGCNAYGQLGIG--VREKQLT----TPALVEMPAN----------------------VQAQSIAAGWAHNAIISTSGEVFTFGWGLYNQLGHGST-HNELQPLAVEALRGLDS--------DIAQVACGTWHTAALTASGDLYTWGWKRDGQLGPRDPLT-----------PQV-------------LPSVVNILSGSSTNNNDDDITAIACGNRCTVALCKNGLVHYWGPRS 303          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.420e-23
Identity = 91/267 (34.08%), Postives = 125/267 (46.82%), Query Frame = 2
Query:  416 HPVEISPLPLL-QLRLRSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSITPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAV-CADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGAL 1210
            H   +SPL     L +RSIACG   V+    TG C+ WG      A                      T P P       VV P  +  + V  +AAG+ H++A+  A G  ++WG    GQ    +  +  A++ G   P                                +R +A G  HSAV++ DG L+TFG GLY QLG GT     + P+ V +LEGVG ++ +  FTG++ VACGAWHTAA++TTGD+YTWGW + G L
Sbjct:   53 HGESLSPLTSRWSLSVRSIACGGSHVLLCTTTGECLWWGDQFNTNA----------------------TQPKP-------VVFP--SPDVFVTQVAAGEAHSLALDAATGRVFSWGSNAFGQC---SVTKDEAIVTGVPVPQ-------------------------------SRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTT-NNVFTPTRVRSLEGVGQLQRNH-FTGLARVACGAWHTAALTTTGDVYTWGWGQHGQL 252          
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Match: G4YY59_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY59_PHYSP)

HSP 1 Score: 111 bits (277), Expect = 1.790e-23
Identity = 98/348 (28.16%), Postives = 150/348 (43.10%), Query Frame = 2
Query:  170 GNYGHCADVRQGDTLKISEVSCGTSVAVALVSPPGTGRERASVFEWGTGMYGERLSSAVKTEAEKPGTKTSDHQIVLLSSYRHPVEISPLPLLQLRLRSIACGAHFVVAAVETGGCIAWGGGREPRALGRGGCGSCSSSTCMSTGKSSI-TPPLPEFNDAGWVVQPLDAGGLEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCTPMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKDGRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSVACGAWHTAAVSTTGDLYTWGWARFGAL 1210
            G +G C        L    V  G +  V +V+  G       V  WG   YGE            P        +V L       ++S       R  ++ACG++ V+A  ++G  +AWG              + S+   +S G+  +  P + EF              +++V +AAG  H++A+ + G  WAWG  + GQLG  + +E+                      +P +   S+E        +  R +A G  HSA+++  G ++TFG GLY QLG G+  +   +P VVDAL+GV +            VACG WHTAA++ +GDLYTWGW + G L
Sbjct:   17 GLFGECLSPPD---LAFVAVDGGDTFTVGVVADSG------EVVGWGRAFYGEL-----------PADSAVGKGVVTL-------QVSE------RCSAVACGSNHVLALTDSGRVVAWG-------------WNASAQAAVSAGEDVVRVPTVVEFPTP-----------VQIVQVAAGGMHSLALDSSGGVWAWGCNEFGQLGINSEVET--------------------QHSPRRVALSAE--------IRVRDIAAGWAHSALVSTSGEVFTFGWGLYNQLGHGST-QNEVEPVVVDALQGVDSEAVQ--------VACGNWHTAALTASGDLYTWGWGKDGQL 270          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig99.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN13_ECTSI9.310e-14045.38Regulator of chromosome condensation-like protein ... [more]
A0A6H5KPF1_9PHAE5.160e-13944.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A329S126_9STRA8.330e-3031.19Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8CI08_PHYNI4.910e-2927.66E3 ubiquitin-protein ligase HERC4 n=7 Tax=Phytopht... [more]
D0N7V0_PHYIT4.870e-2633.60Regulator of chromosome condensation (RCC1)-like p... [more]
A0A3M6VGR6_9STRA4.080e-2528.35Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
W4GMU7_9STRA4.660e-2533.69Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A0P1AA17_PLAHL3.590e-2428.45FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxI... [more]
W4GLY5_9STRA1.420e-2334.08Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
G4YY59_PHYSP1.790e-2328.16Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig99contigA-nodosum_M_contig99:599970..602830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LN13
PFAMsRCC1
Model size1872
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.55e-142
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-27_000990.1
Descriptionguanyl-nucleotide exchange factor activity
Cds size1674
COG categoryDZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870527.1596446-UTR-A-nodosum_M_contig99:599969..6000881680870527.1596446-UTR-A-nodosum_M_contig99:599969..600088Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 599970..600088 -
1680870527.2166536-UTR-A-nodosum_M_contig99:602751..6028301680870527.2166536-UTR-A-nodosum_M_contig99:602751..602830Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig99 602752..602830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870527.1790113-CDS-A-nodosum_M_contig99:600088..6006381680870527.1790113-CDS-A-nodosum_M_contig99:600088..600638Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 600089..600638 -
1680870527.1905963-CDS-A-nodosum_M_contig99:601311..6014961680870527.1905963-CDS-A-nodosum_M_contig99:601311..601496Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 601312..601496 -
1680870527.2029982-CDS-A-nodosum_M_contig99:601812..6027511680870527.2029982-CDS-A-nodosum_M_contig99:601812..602751Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig99 601813..602751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig99.62.1prot_A-nodosum_M_contig99.62.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig99 600089..602751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig99.62.1

>prot_A-nodosum_M_contig99.62.1 ID=prot_A-nodosum_M_contig99.62.1|Name=mRNA_A-nodosum_M_contig99.62.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=558bp
MARLVGCGDSSFCQLPCECPCSSWHREGTDGNYGHCADVRQGDTLKISEV
SCGTSVAVALVSPPGTGRERASVFEWGTGMYGERLSSAVKTEAEKPGTKT
SDHQIVLLSSYRHPVEISPLPLLQLRLRSIACGAHFVVAAVETGGCIAWG
GGREPRALGRGGCGSCSSSTCMSTGKSSITPPLPEFNDAGWVVQPLDAGG
LEVVCLAAGDDHAVAVCADGNAWAWGRGDCGQLGCGTPIESGALLHGSCT
PMMVQFPSAASNDTPAKHENSSEASDNATSPVLARSVACGRDHSAVLTKD
GRLWTFGSGLYGQLGLGTVGERAWKPSVVDALEGVGTMRADGTFTGISSV
ACGAWHTAAVSTTGDLYTWGWARFGALGELPKYAASFPSSTRDGEPKIDD
RRTHQDAEVRPYPGLVDGLDFVLSEHDEVVSVGCGSRYTLALSREKRVLV
WGQISPSDDDRIRRVGLGSFGSGGVSSRPPQEVSPCRPRELKPEDLLRAS
ASAVCDEKLERCRGHVGEDRGPRGAGRGHGGEGNGSLWRVSSAGCGPWYV
VLGLEEG*
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mRNA from alignment at A-nodosum_M_contig99:599970..602830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig99.62.1 ID=mRNA_A-nodosum_M_contig99.62.1|Name=mRNA_A-nodosum_M_contig99.62.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2861bp|location=Sequence derived from alignment at A-nodosum_M_contig99:599970..602830- (Ascophyllum nodosum dioecious)
TGTAGGTACCTGGTAGTCTACATACCGGCCCCTACATACCGTATTACAAT TAGCGAACAGTGTAATTAGTATACACTCGATGGCTCGACTCGTAGGGTGC GGAGACTCAAGTTTCTGCCAGCTCCCATGCGAATGCCCATGCTCTTCATG GCATCGTGAGGGCACCGACGGAAACTATGGACACTGCGCCGACGTACGAC AAGGTGATACCCTGAAGATATCGGAGGTATCATGCGGAACCTCTGTCGCC GTAGCGCTTGTGTCTCCTCCCGGCACCGGTCGAGAGAGGGCCAGTGTGTT CGAATGGGGAACAGGCATGTACGGAGAAAGACTATCATCGGCAGTGAAAA CGGAAGCCGAGAAGCCGGGAACGAAGACGAGTGACCATCAAATCGTACTG CTCTCATCCTATCGACATCCAGTGGAGATATCTCCTCTGCCGCTTCTCCA GCTGCGGCTGCGATCTATCGCTTGCGGGGCACATTTCGTCGTCGCAGCTG TGGAGACCGGAGGCTGTATTGCGTGGGGTGGAGGAAGAGAGCCGAGGGCT TTAGGTCGTGGTGGCTGTGGCAGCTGCAGCTCGTCGACATGTATGAGCAC TGGTAAATCTTCGATAACCCCACCCCTTCCCGAGTTCAACGATGCGGGCT GGGTCGTCCAACCCTTGGATGCAGGAGGGCTTGAGGTGGTCTGTTTGGCG GCGGGGGACGATCACGCCGTCGCAGTCTGCGCGGATGGGAATGCTTGGGC ATGGGGCCGCGGGGATTGCGGTCAACTCGGCTGCGGCACCCCTATAGAGA GCGGTGCTCTTCTGCACGGCAGCTGCACCCCCATGATGGTGCAGTTCCCT TCTGCTGCTTCTAATGATACACCTGCCAAGCATGAAAATAGCAGCGAGGC CAGCGATAACGCGACAAGCCCGGTACTGGCCCGTTCGGTCGCGTGCGGGC GTGATCACAGCGCGGTGCTAACGAAGGATGGCCGATTATGGACGTTTGGA AGCGGACTTTATGGGCAGGTGTGATCCACCAAAGGAATGGATGAACTTCA CCTCCATCACACCGATGATGTCCTGACAGCAGTTTCGAGGGGCTTTCGGC GCCCGTCCGCAAGATCGACGAGAGAAATAATGCTTCTCCTTTTTCTACCT CGATGAAAGCTTTTGCGCGTGCTACTTGAATCAACGGTAATCTTCCTAAA AATTGACGCCGTTTGCCACATTGACCAACAGTCGTGAGTGCTGACACTCA TCGCGCGGAGTAACAGCAACTACATACCTTGTACCTGGTACAAATGAAGA GTTCGCCCCTTCTGCCCTCGTTCGAATGAACCAGCTCGGCCTGGGCACCG TCGGCGAGAGAGCGTGGAAGCCGAGCGTCGTCGATGCCTTGGAAGGCGTC GGCACGATGAGAGCGGACGGAACGTTCACAGGAATTTCTTCGGTGGCGTG CGGGGCGTGGCACACTGCGGCAGTCTCCACCACCGGAGATCTGTACACCT GGGGATGGGCCCGCTTTGGGTGAGCTCCCCTCCTGCACCCCGTGTTCTCT CGCCTAGAGCAAAGTATGCGCAAGGTCTCCAGTCTTCCTAAGTCATATGA CGTGAGATGAACTTAAATAACAGAGTGAACCTTTGCAGCCATATAACCCG GGCGATATTGTTGTTGTACAGCACCTCACTTACGGCCGATGGGCCTCAAC GTGCAAGGTTATCAATTCCACCTACTGCAACGCTATTATTGCCATCATGC AGGTAGTCACGAAGGATCTTCCCACCTCTCCTCGGTTCTCGCCTTACGAA TTTTTATCGCGATGCAAGTTCGCCACTCTTACAACTCGTCAACCAATGGT TGAATTTTACTTACTCACGTTTTCACGCTTTCCACTACGGAAGCCAGAAT TCAAATTCTCATTTTCACAAGAATCGAACTCACGACTTTCTGCTATTAAT AGACCACTCGGGCGTGCAAGTATTAGGCACCATTTCGCCACAAAACGAGC TCTCACCACGAAAATCACAAATGTCTGCCAGCATCACCCTAACGTTTTTT TTTTTTTTTTTTTTTTTGTCGCCTCCCTCTTGAGCGGCGATTTCACGCCA TAATCTTCATTCTCCGTGAGCTTACATATACTGCTCCGTACCTAGGACCT TTTTTAAGCCCCTGTATTTTCTTTTGCATGATTGATAAAAAGGGCTCTGG GGGAGCTACCGAAATACGCAGCCTCCTTTCCAAGCTCAACGCGCGATGGA GAGCCTAAAATAGACGACAGGAGAACACACCAGGACGCAGAGGTGCGCCC TTATCCAGGTCTGGTAGACGGCTTGGATTTCGTCCTCTCGGAGCACGACG AAGTAGTGTCCGTCGGGTGTGGGTCCCGGTATACGCTGGCACTGTCACGG GAGAAAAGGGTGCTGGTGTGGGGGCAGATCTCGCCGTCCGATGATGACCG AATCAGAAGAGTGGGCCTTGGCTCGTTTGGCAGCGGCGGAGTTTCCTCTC GCCCGCCACAGGAGGTTTCGCCTTGTCGCCCGCGAGAGCTGAAACCGGAG GATCTTTTACGCGCTTCCGCTTCCGCGGTGTGCGATGAAAAACTGGAGCG TTGTCGCGGTCATGTCGGAGAAGATCGTGGGCCGAGGGGAGCGGGGCGGG GCCACGGCGGGGAAGGCAACGGCTCGCTGTGGAGGGTATCGTCAGCGGGG TGCGGGCCCTGGTACGTGGTGCTCGGCCTCGAGGAAGGCTAATATCAGTG GGTTTCTTGCGAGTGACGGTCCGACTACTGTAATGCCCCACCGGCCGCGG TGTCGAGATATATAGGCACGCACAAGGGCGGTGTTCCAAGGGCTATTATT AATAGGAATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig99:599970..602830-

>mRNA_A-nodosum_M_contig99.62.1 ID=mRNA_A-nodosum_M_contig99.62.1|Name=mRNA_A-nodosum_M_contig99.62.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1674bp|location=Sequence derived from alignment at A-nodosum_M_contig99:599970..602830- (Ascophyllum nodosum dioecious)
ATGGCTCGACTCGTAGGGTGCGGAGACTCAAGTTTCTGCCAGCTCCCATG
CGAATGCCCATGCTCTTCATGGCATCGTGAGGGCACCGACGGAAACTATG
GACACTGCGCCGACGTACGACAAGGTGATACCCTGAAGATATCGGAGGTA
TCATGCGGAACCTCTGTCGCCGTAGCGCTTGTGTCTCCTCCCGGCACCGG
TCGAGAGAGGGCCAGTGTGTTCGAATGGGGAACAGGCATGTACGGAGAAA
GACTATCATCGGCAGTGAAAACGGAAGCCGAGAAGCCGGGAACGAAGACG
AGTGACCATCAAATCGTACTGCTCTCATCCTATCGACATCCAGTGGAGAT
ATCTCCTCTGCCGCTTCTCCAGCTGCGGCTGCGATCTATCGCTTGCGGGG
CACATTTCGTCGTCGCAGCTGTGGAGACCGGAGGCTGTATTGCGTGGGGT
GGAGGAAGAGAGCCGAGGGCTTTAGGTCGTGGTGGCTGTGGCAGCTGCAG
CTCGTCGACATGTATGAGCACTGGTAAATCTTCGATAACCCCACCCCTTC
CCGAGTTCAACGATGCGGGCTGGGTCGTCCAACCCTTGGATGCAGGAGGG
CTTGAGGTGGTCTGTTTGGCGGCGGGGGACGATCACGCCGTCGCAGTCTG
CGCGGATGGGAATGCTTGGGCATGGGGCCGCGGGGATTGCGGTCAACTCG
GCTGCGGCACCCCTATAGAGAGCGGTGCTCTTCTGCACGGCAGCTGCACC
CCCATGATGGTGCAGTTCCCTTCTGCTGCTTCTAATGATACACCTGCCAA
GCATGAAAATAGCAGCGAGGCCAGCGATAACGCGACAAGCCCGGTACTGG
CCCGTTCGGTCGCGTGCGGGCGTGATCACAGCGCGGTGCTAACGAAGGAT
GGCCGATTATGGACGTTTGGAAGCGGACTTTATGGGCAGCTCGGCCTGGG
CACCGTCGGCGAGAGAGCGTGGAAGCCGAGCGTCGTCGATGCCTTGGAAG
GCGTCGGCACGATGAGAGCGGACGGAACGTTCACAGGAATTTCTTCGGTG
GCGTGCGGGGCGTGGCACACTGCGGCAGTCTCCACCACCGGAGATCTGTA
CACCTGGGGATGGGCCCGCTTTGGGGCTCTGGGGGAGCTACCGAAATACG
CAGCCTCCTTTCCAAGCTCAACGCGCGATGGAGAGCCTAAAATAGACGAC
AGGAGAACACACCAGGACGCAGAGGTGCGCCCTTATCCAGGTCTGGTAGA
CGGCTTGGATTTCGTCCTCTCGGAGCACGACGAAGTAGTGTCCGTCGGGT
GTGGGTCCCGGTATACGCTGGCACTGTCACGGGAGAAAAGGGTGCTGGTG
TGGGGGCAGATCTCGCCGTCCGATGATGACCGAATCAGAAGAGTGGGCCT
TGGCTCGTTTGGCAGCGGCGGAGTTTCCTCTCGCCCGCCACAGGAGGTTT
CGCCTTGTCGCCCGCGAGAGCTGAAACCGGAGGATCTTTTACGCGCTTCC
GCTTCCGCGGTGTGCGATGAAAAACTGGAGCGTTGTCGCGGTCATGTCGG
AGAAGATCGTGGGCCGAGGGGAGCGGGGCGGGGCCACGGCGGGGAAGGCA
ACGGCTCGCTGTGGAGGGTATCGTCAGCGGGGTGCGGGCCCTGGTACGTG
GTGCTCGGCCTCGAGGAAGGCTAA
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