mRNA_A-nodosum_M_contig981.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig981.9.1
Unique NamemRNA_A-nodosum_M_contig981.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5J9Z8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z8_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.460e-48
Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            M G VF+ YI DF+  + +  L DGKP++LVLDGHASHV+L+V++LA +LNI L QLPSH SH+TQPLDVA FGCFKK +T  + +FP  HGG +P K DMA V+  AW+ SFT    KASF GAGLWP
Sbjct:   57 MCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWP 185
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5KP55_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP55_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.940e-48
Identity = 78/129 (60.47%), Postives = 98/129 (75.97%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            M G VF+ YI++F+  + E  L DGKP++LVLDGHASHV+LDVI+LA++LNI L QLPSH SH+TQPLDVA FGCFKK +  V+ +FP ++GG +P K DMAG++  AW  SFT    K SF GAGLWP
Sbjct:  116 MCGDVFIKYIQNFHKQLGERNLLDGKPHVLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINKVSFAGAGLWP 244
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5JH52_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH52_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.180e-48
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            M G VF++YIKDF+  +    L DG+P++LVLDGHASHV+LDV++LA +L+I L QLPSH SH+TQPLDVA FGCFKK +T  + +FP  HGG +P K DMA V+  AW+ SFT     ASF   GLWP
Sbjct:    1 MCGDVFISYIKDFHKQLFLRNLLDGEPHVLVLDGHASHVSLDVVELARSLDIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMAAVIGQAWSTSFTPEINMASFAREGLWP 129
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.520e-48
Identity = 71/129 (55.04%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            MQG  FVNY++DF+  +++  L +G P++L LDGHASHV  +V++LA  LNI L+Q+PSHSSH+ QPLDV +FG FK+ +T VL++FP ++GG++P KSDM G++ DAW  SF+  Q  +SF GAGLWP
Sbjct:   71 MQGIAFVNYVRDFHRQLLDRDLINGTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFVGAGLWP 199
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5KAG8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.930e-48
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            M G VF+ YI DF+  + +  L DGKP++LVLDGHASHV+L+V++LA +LNI + QLPSH SH+TQPLDVA FGCFKK +T  + +FP  HGG +P K DMA V+  AW+ SFT    KASF GA LWP
Sbjct:   57 MCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHVVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGASLWP 185
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.320e-48
Identity = 74/129 (57.36%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            MQG VFVNYI+DF+  +++ GL +G P++LVLDGHASHV  +V++LA  LNI L+Q+PSHSSH+ QPLDV +FG FK+ +T VL++FP ++GG++P KSDM G++ DAW  SF+  +  +SF GAGLWP
Sbjct:  251 MQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWP 379
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.990e-48
Identity = 81/129 (62.79%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            MQG +F+ Y+KDF+  + + GL DGKP+IL+LDGHASHV+++VI+LAM L I LFQLPSH+SH+TQPLDV AFG FKK+VT VL SF    GG +P K DM GV+ DAW  SFT    K+SF GAGLWP
Sbjct:  264 MQGDLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASFYRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWP 392
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.040e-47
Identity = 79/129 (61.24%), Postives = 99/129 (76.74%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            M G VF+ YIK+F+  + +  L DGKP++LVLDGHASHV LDVI+LA++LNI L QLPSH SH+TQPLDVA FGCFKK +  V+ +FP ++GG +P K DMAG++  AW +SFT    KASF GAGLWP
Sbjct:  265 MCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWP 393
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 5.430e-47
Identity = 78/129 (60.47%), Postives = 96/129 (74.42%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            M G VF+ YI DF+  + +  L DGKP++LVLDGHASHV+L+V++LA +LNI L QLPSH SH+TQPLDVA FGCFKK +T  + +FP  HGG +P K DMA V+  AW+ SFT    KASF GAGLWP
Sbjct:  177 MCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWP 305
[Close]
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 9.650e-47
Identity = 76/129 (58.91%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:    1 MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTLNIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGLWP 387
            MQG VFVNYI+DF+  +++ GL +G P++LVLDGHASHV  +VI+LA  LNI L+Q+PSHSSH+ QPLDV +FG FK+ +T VL++FP ++GG++P KSDM G++ DAW  SF+  Q  +SF GAGLWP
Sbjct:  251 MQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWP 379
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig981.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9Z8_9PHAE1.460e-4860.47DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KP55_9PHAE1.940e-4860.47DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JH52_9PHAE2.180e-4858.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K717_9PHAE4.520e-4855.04DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KAG8_9PHAE4.930e-4858.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L5E2_9PHAE6.320e-4857.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA3_9PHAE6.990e-4862.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE2.040e-4761.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH00_9PHAE5.430e-4760.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI9.650e-4758.91Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig981contigA-nodosum_M_contig981:113237..113623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LN28
PFAMsDDE_1
Model size387
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.74e-43
EggNOG OGs2CZS4@1|root,2SBGG@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size387
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870515.6422899-CDS-A-nodosum_M_contig981:113236..1136231680870515.6422899-CDS-A-nodosum_M_contig981:113236..113623Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig981 113237..113623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig981.9.1prot_A-nodosum_M_contig981.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig981 113237..113623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig981.9.1

>prot_A-nodosum_M_contig981.9.1 ID=prot_A-nodosum_M_contig981.9.1|Name=mRNA_A-nodosum_M_contig981.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp
MQGAVFVNYIKDFYNFIVENGLADGKPNILVLDGHASHVNLDVIQLAMTL
NIELFQLPSHSSHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSD
MAGVVKDAWAASFTVPQIKASFEGAGLWP
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mRNA from alignment at A-nodosum_M_contig981:113237..113623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig981.9.1 ID=mRNA_A-nodosum_M_contig981.9.1|Name=mRNA_A-nodosum_M_contig981.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig981:113237..113623+ (Ascophyllum nodosum dioecious)
ATGCAGGGCGCTGTATTCGTGAACTACATCAAGGATTTCTATAACTTCAT
CGTGGAGAACGGCTTGGCGGACGGCAAACCGAACATTCTCGTGCTTGACG
GCCACGCGTCGCACGTGAACCTCGACGTTATCCAGCTAGCCATGACCCTC
AATATTGAGCTCTTTCAACTGCCGTCTCACTCCTCCCACATGACCCAGCC
GTTAGATGTAGCGGCTTTCGGGTGTTTCAAGAAGGCAGTGACCGCGGTCC
TCACAAGCTTTCCGCTTCAGCACGGTGGTAAGATGCCGGGGAAATCCGAC
ATGGCCGGGGTGGTCAAGGATGCGTGGGCGGCGAGCTTTACGGTGCCACA
GATCAAGGCTTCATTCGAGGGAGCAGGACTGTGGCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig981:113237..113623+

>mRNA_A-nodosum_M_contig981.9.1 ID=mRNA_A-nodosum_M_contig981.9.1|Name=mRNA_A-nodosum_M_contig981.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig981:113237..113623+ (Ascophyllum nodosum dioecious)
ATGCAGGGCGCTGTATTCGTGAACTACATCAAGGATTTCTATAACTTCAT
CGTGGAGAACGGCTTGGCGGACGGCAAACCGAACATTCTCGTGCTTGACG
GCCACGCGTCGCACGTGAACCTCGACGTTATCCAGCTAGCCATGACCCTC
AATATTGAGCTCTTTCAACTGCCGTCTCACTCCTCCCACATGACCCAGCC
GTTAGATGTAGCGGCTTTCGGGTGTTTCAAGAAGGCAGTGACCGCGGTCC
TCACAAGCTTTCCGCTTCAGCACGGTGGTAAGATGCCGGGGAAATCCGAC
ATGGCCGGGGTGGTCAAGGATGCGTGGGCGGCGAGCTTTACGGTGCCACA
GATCAAGGCTTCATTCGAGGGAGCAGGACTGTGGCCT
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