mRNA_A-nodosum_M_contig980.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig980.11.1
Unique NamemRNA_A-nodosum_M_contig980.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig980.11.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 8.740e-5
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   73 GNLSCVSVVGALFDTS-PCYQAA-YAFTMNGNTSIEANTVNLAVVVDASRSITTTSSSDNFTRSEWSKEKEFAK 288
            G  SCV V    + T+ PC   + Y+FTM G T++ ANTVN+AV++DAS S++T         ++W   KEFAK
Sbjct:   52 GQESCVQVAYPTWGTNCPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSVST---------ADWELSKEFAK 116
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig980.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRK3_9PHAE8.740e-543.24VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig980contigA-nodosum_M_contig980:39975..40639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHN6
PFAMsCollagen
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categorysignal peptide
Exons2
Evalue0.000244
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size288
COG categoryD
BRITEko00000,ko00001,ko00536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870514.3042033-CDS-A-nodosum_M_contig980:39974..400791680870514.3042033-CDS-A-nodosum_M_contig980:39974..40079Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig980 39975..40079 -
1680870514.3154547-CDS-A-nodosum_M_contig980:40456..406391680870514.3154547-CDS-A-nodosum_M_contig980:40456..40639Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig980 40457..40639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig980.11.1prot_A-nodosum_M_contig980.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig980 39975..40639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig980.11.1

>prot_A-nodosum_M_contig980.11.1 ID=prot_A-nodosum_M_contig980.11.1|Name=mRNA_A-nodosum_M_contig980.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MLLFRATAMMAISRAYCQSTNNTIGNLSCVSVVGALFDTSPCYQAAYAFT
MNGNTSIEANTVNLAVVVDASRSITTTSSSDNFTRSEWSKEKEFAK
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mRNA from alignment at A-nodosum_M_contig980:39975..40639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig980.11.1 ID=mRNA_A-nodosum_M_contig980.11.1|Name=mRNA_A-nodosum_M_contig980.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=665bp|location=Sequence derived from alignment at A-nodosum_M_contig980:39975..40639- (Ascophyllum nodosum dioecious)
ATGCTGCTGTTCAGAGCAACGGCGATGATGGCTATTTCCCGAGCGTATTG
TCAGTCTACGAACAACACGATTGGGAATTTGTCGTGCGTGAGCGTGGTCG
GCGCTTTGTTCGATACCTCTCCGTGCTACCAAGCGGCCTATGCGTTTACG
ATGAATGGGAACACTTCGATCGAGGCTAACACGGTAAACGATGTCGGCGT
CGGCGGTGGTATGTATTTTCCTTCTGCGCACGATGGCTTCAGCTCAGCTC
ATGTGCCTATTTTGAGTAACGGAGCATCCAACGATAGATTCCCTAGCATC
CTTATTTATGAAAGAGCAATTTCATACGCCGCGGGGTTTCGAAACGCACG
GCAATATGTTGAATCATATTTCTACCATTTTCTTCCGTAAAGGGGTTTGA
TTTTTTACTCTGTACGGGTGGAGGGCGAGGCTCGATAGCGTATCACGTTG
TTGGAGTAGTCTCTCTCTTCTCACGCCTCGATTTCTTTGCGTTTTCGAGC
ATAAACACAAAACTACGTTACACTTTTGCATTTCGCTGTACCGCGGGAAT
AACGTCACAGGTTAACCTTGCCGTGGTGGTGGACGCATCACGCAGCATCA
CTACAACATCGTCCTCTGATAACTTTACCAGGTCGGAGTGGAGTAAAGAA
AAAGAGTTCGCAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig980:39975..40639-

>mRNA_A-nodosum_M_contig980.11.1 ID=mRNA_A-nodosum_M_contig980.11.1|Name=mRNA_A-nodosum_M_contig980.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig980:39975..40639- (Ascophyllum nodosum dioecious)
ATGCTGCTGTTCAGAGCAACGGCGATGATGGCTATTTCCCGAGCGTATTG
TCAGTCTACGAACAACACGATTGGGAATTTGTCGTGCGTGAGCGTGGTCG
GCGCTTTGTTCGATACCTCTCCGTGCTACCAAGCGGCCTATGCGTTTACG
ATGAATGGGAACACTTCGATCGAGGCTAACACGGTTAACCTTGCCGTGGT
GGTGGACGCATCACGCAGCATCACTACAACATCGTCCTCTGATAACTTTA
CCAGGTCGGAGTGGAGTAAAGAAAAAGAGTTCGCAAAG
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