mRNA_A-nodosum_M_contig980.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig980.10.1
Unique NamemRNA_A-nodosum_M_contig980.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig980.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig980contigA-nodosum_M_contig980:39287..39817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHN6
PFAMsCollagen
Model size243
Max annot lvl2759|Eukaryota
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.18e-05
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size225
COG categoryD
BRITEko00000,ko00001,ko00536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870514.2448275-CDS-A-nodosum_M_contig980:39286..393691680870514.2448275-CDS-A-nodosum_M_contig980:39286..39369Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig980 39287..39369 -
1680870514.2614727-CDS-A-nodosum_M_contig980:39658..398001680870514.2614727-CDS-A-nodosum_M_contig980:39658..39800Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig980 39659..39800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870514.2729099-UTR-A-nodosum_M_contig980:39800..398171680870514.2729099-UTR-A-nodosum_M_contig980:39800..39817Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig980 39801..39817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig980.10.1prot_A-nodosum_M_contig980.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig980 39287..39800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig980.10.1

>prot_A-nodosum_M_contig980.10.1 ID=prot_A-nodosum_M_contig980.10.1|Name=mRNA_A-nodosum_M_contig980.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MAKANSLLAANASTATYMFVITDGNGIVGDAPANALAAGTSIFVVGVGTI
SEETLVAITGGSGVSYDVDDFDELD
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mRNA from alignment at A-nodosum_M_contig980:39287..39817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig980.10.1 ID=mRNA_A-nodosum_M_contig980.10.1|Name=mRNA_A-nodosum_M_contig980.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at A-nodosum_M_contig980:39287..39817- (Ascophyllum nodosum dioecious)
CTAACATTGATGTGGGCATGGCAAAAGCAAACAGTCTACTCGCCGCCAAT
GCGTCTACGGCAACGTACATGTTCGTCATCACTGATGGAAATGGCATCGT
GGGAGACGCGCCCGCGAATGCCCTGGCCGCGGGTACCTCTATTTTCGTCG
TGGGTGTAGGTGAGGTTGAGAAGGCTCGTGGTAAAAGGTTGGAACACAAG
AACGTCATGGGGGTCTGTGCTCACCATTTATAGTGCTTCGTCGTGGACCT
CGTGTTGACTGCCTTTGATAAGGATGCCTCCCATACCTTGTGTTTTCTCA
CCGGTTGACCATATTCGCCGCTAGAGGGTTCAATATGTAAGAGTAACAAA
AGGCACGCGGTAGATCGACTGTCGCACGTAGGTGTTGTAATACTTAGGAG
TCGTCGGTTTTGAGGTCCCATCGCTTGTCCTTGTTTCGACCATGGTAGGG
ACCATCTCAGAAGAAACTCTCGTCGCGATCACTGGGGGCTCAGGCGTCTC
CTACGACGTGGACGACTTTGATGAACTCGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig980:39287..39817-

>mRNA_A-nodosum_M_contig980.10.1 ID=mRNA_A-nodosum_M_contig980.10.1|Name=mRNA_A-nodosum_M_contig980.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig980:39287..39817- (Ascophyllum nodosum dioecious)
ATGGCAAAAGCAAACAGTCTACTCGCCGCCAATGCGTCTACGGCAACGTA
CATGTTCGTCATCACTGATGGAAATGGCATCGTGGGAGACGCGCCCGCGA
ATGCCCTGGCCGCGGGTACCTCTATTTTCGTCGTGGGTGTAGGGACCATC
TCAGAAGAAACTCTCGTCGCGATCACTGGGGGCTCAGGCGTCTCCTACGA
CGTGGACGACTTTGATGAACTCGAC
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