mRNA_A-nodosum_M_contig98.35.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig98.35.1
Unique NamemRNA_A-nodosum_M_contig98.35.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5KWL9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.500e-8
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:   48 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 85
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5KZG0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.910e-8
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:   72 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 109
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5K856_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K856_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.480e-8
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R K+I LY+C +DL KAYDSVDR +L
Sbjct:    1 MLFVLRRLQELGRRKKIPLYMCFVDLNKAYDSVDREML 38
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5L5Y6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.190e-7
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:   84 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 121
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5KQ53_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ53_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.230e-7
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R K+I LY+C +DL KAYDSVDR LL
Sbjct:   59 MLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDRQLL 96
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5J6Q0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.330e-7
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:   87 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 124
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5JE46_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE46_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:   98 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 135
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5KLC1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.610e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R K+I LY+C +DL KAYDSVDR +L
Sbjct:  125 MLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREML 162
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5KT29_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT29_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.690e-7
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:  155 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 192
[Close]
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Match: A0A6H5K615_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K615_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.880e-7
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLL 114
            MLFV+RRL EL R +RI LY+C IDL KAYDSVDR LL
Sbjct:  153 MLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELL 190
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig98.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWL9_9PHAE3.500e-873.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KZG0_9PHAE5.910e-873.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K856_9PHAE6.480e-868.42Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5Y6_9PHAE1.190e-773.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KQ53_9PHAE1.230e-771.05Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J6Q0_9PHAE1.330e-773.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JE46_9PHAE1.940e-773.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KLC1_9PHAE2.610e-768.42Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KT29_9PHAE2.690e-773.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K615_9PHAE2.880e-773.68Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig98contigA-nodosum_M_contig98:326907..327233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870510.0638661-CDS-A-nodosum_M_contig98:326906..3270651680870510.0638661-CDS-A-nodosum_M_contig98:326906..327065Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig98 326907..327065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870510.0801883-UTR-A-nodosum_M_contig98:327065..3272331680870510.0801883-UTR-A-nodosum_M_contig98:327065..327233Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig98 327066..327233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig98.35.1prot_A-nodosum_M_contig98.35.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig98 326907..327065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig98.35.1

>prot_A-nodosum_M_contig98.35.1 ID=prot_A-nodosum_M_contig98.35.1|Name=mRNA_A-nodosum_M_contig98.35.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
MLFVIRRLPELAREKRISLYICLIDLTKAYDSVDRTLLTRTHFLCSVDHE
QD*
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mRNA from alignment at A-nodosum_M_contig98:326907..327233+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig98.35.1 ID=mRNA_A-nodosum_M_contig98.35.1|Name=mRNA_A-nodosum_M_contig98.35.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig98:326907..327233+ (Ascophyllum nodosum dioecious)
ATGTTGTTTGTGATTCGTCGGCTACCGGAGTTGGCGCGGGAGAAACGAAT
TTCGCTATATATATGCTTGATCGACCTTACCAAAGCGTACGACTCCGTTG
ACCGAACCCTCCTCACTCGCACCCATTTTCTCTGTTCAGTTGACCACGAG
CAGGATTGACAACCTTATCCAGTTGATCTATACTCTGCTATATGTAATGA
CCATACATACATATTACATGATGTTTGAGGCCCAACCGATATCCACAACA
TACAAATATCTTTGACCCGCCACAACAGAGAGAAGAACTAGAAGCAAGCG
TCTAGCATAAAATGACTATCAGAACAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig98:326907..327233+

>mRNA_A-nodosum_M_contig98.35.1 ID=mRNA_A-nodosum_M_contig98.35.1|Name=mRNA_A-nodosum_M_contig98.35.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig98:326907..327233+ (Ascophyllum nodosum dioecious)
ATGTTGTTTGTGATTCGTCGGCTACCGGAGTTGGCGCGGGAGAAACGAAT
TTCGCTATATATATGCTTGATCGACCTTACCAAAGCGTACGACTCCGTTG
ACCGAACCCTCCTCACTCGCACCCATTTTCTCTGTTCAGTTGACCACGAG
CAGGATTGA
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