mRNA_A-nodosum_M_contig9773.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9773.2.1
Unique NamemRNA_A-nodosum_M_contig9773.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A2S2NGY3_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA)

HSP 1 Score: 82.0 bits (201), Expect = 2.280e-18
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPKLQSHFAEFLQQGYLK 195
            T+RHRAGV PYTSSC+ AE CVF+KQSPPP LC R  L+ K  LL+  L+ +FAEFL+ G LK
Sbjct:   31 TFRHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPRPLLAQKPGLLLANLRRYFAEFLKCGSLK 93          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A166H365_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G4 TaxID=1701326 RepID=A0A166H365_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 4.960e-18
Identity = 51/95 (53.68%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKS-----LLLIPKLQSHFAEFLQQGYLKAP*CSPPVHLWRFAVR---FL*STFFL 267
            T++H AGVSPYTS   LAET VF KQSP P LC    L  +S      LLIPKL+S+FAEFL +GYL       P H  RFAVR    L +T FL
Sbjct:   47 TFQHWAGVSPYTSPYGLAETYVFGKQSPGPALCGLSSLQTRSPSQAEALLIPKLRSYFAEFLNEGYLDHLRVLTPAHQCRFAVRAPTVLATTLFL 141          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A6A5L776_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L776_LUPAL)

HSP 1 Score: 75.1 bits (183), Expect = 6.810e-15
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPKLQSHFAEFLQQGYLK 195
            T++HRAGV PYTSSC+ AE CVF+KQS PP LC    L+   + L+PKL+  FAEFLQ   LK
Sbjct:   86 TFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLK 148          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A382BNH5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382BNH5_9ZZZZ)

HSP 1 Score: 72.0 bits (175), Expect = 9.610e-15
Identity = 38/66 (57.58%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   13 RHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLL-----LIPKLQSHFAEFLQQGYLK 195
            RHRAGV+PYTSS E AE  VFNKQS PP+ C    L P+ L      L+PKL+ HFAEFL    LK
Sbjct:    1 RHRAGVTPYTSSYEFAECYVFNKQSQPPLCCNPFPLQPQGLHVSGAHLLPKLRCHFAEFLHPSCLK 66          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A1V5J5Q1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5J5Q1_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 3.460e-14
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPKLQSHFAEFLQQGYL 192
            T++HRAGVSPYTSS +LAETCVF KQS  P LC  L ++P    L+PKL+ +FAEFL    L
Sbjct:   81 TFQHRAGVSPYTSSFDLAETCVFAKQSLGPFLCGHLSVAP----LLPKLRGYFAEFLNNASL 138          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 75.1 bits (183), Expect = 6.640e-14
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPKLQSHFAEFLQQGYLK 195
            T++HRAGV PYTSSC+ AE CVF+KQS PP LC    L+   + L+PKL+  FAEFLQ   LK
Sbjct:  170 TFQHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLK 232          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A7R9RWX0_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9RWX0_9CRUS)

HSP 1 Score: 68.6 bits (166), Expect = 2.670e-13
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 NFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRL-KLSPKSLLLIPKLQSHFAEFLQQGYL 192
            + T+RH AGVSP+TSS ELAETCVF KQS   + C  L + +P    L+PKL+ HFAEFL++ YL
Sbjct:    3 SLTFRHWAGVSPHTSSYELAETCVFGKQSLGSLHCDPLLRWAP----LLPKLRGHFAEFLRESYL 63          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A7VSA7_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM)

HSP 1 Score: 67.0 bits (162), Expect = 3.860e-12
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPKLQSHFAEFL 177
            T++HRAGVSPYTSS +LAETCVF KQSP PI C  +        L PKL+  FAEFL
Sbjct:   47 TFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHCGSIS----GASLFPKLRDQFAEFL 99          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A7S3IBR0_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IBR0_9CILI)

HSP 1 Score: 65.1 bits (157), Expect = 1.410e-11
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQ------RLKLSPKSLLLIPKLQSHFAEFLQQG 186
            T++HRAGV PYTSSC+ AE CVF+KQS  P LC       R    PK    +PKL+  FAEFL   
Sbjct:   53 TFQHRAGVRPYTSSCDFAEPCVFSKQSLSPSLCDHPTPTNRKSRRPKVAPHLPKLRGQFAEFLNHS 118          
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Match: A0A077ZLA3_TRITR (Uncharacterized protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZLA3_TRITR)

HSP 1 Score: 63.5 bits (153), Expect = 4.810e-10
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 TYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPKLQSHFAEFL 177
            T++HRAGVS YTSS +LA+TCVF KQ   PILC  +  +P    L+PKL+  FAEFL
Sbjct:  139 TFQHRAGVSSYTSSFDLAQTCVFGKQLLGPILCGSISGAP----LLPKLRGQFAEFL 191          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9773.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S2NGY3_SCHGA2.280e-1863.49Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
A0A166H365_9BACT4.960e-1853.68Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A6A5L776_LUPAL6.810e-1558.73Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A382BNH5_9ZZZZ9.610e-1557.58Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1V5J5Q1_9BACT3.460e-1459.68Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A6A5KV19_LUPAL6.640e-1458.73Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A7R9RWX0_9CRUS2.670e-1356.92Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A7VSA7_9FIRM3.860e-1261.40Uncharacterized protein n=1 Tax=[Clostridium] lept... [more]
A0A7S3IBR0_9CILI1.410e-1151.52Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]
A0A077ZLA3_TRITR4.810e-1057.89Uncharacterized protein n=1 Tax=Trichuris trichiur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9773contigA-nodosum_M_contig9773:6673..6943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1089548.KI783301_gene3307
Model size271
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-14
EggNOG OGs2B9ZZ@1|root,323DM@2|Bacteria,1V6N4@1239|Firmicutes,4IRDZ@91061|Bacilli
DescriptionCOG NOG15344 non supervised orthologous group
Cds size204
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.2953541-CDS-A-nodosum_M_contig9773:6672..68761680870506.2953541-CDS-A-nodosum_M_contig9773:6672..6876Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9773 6673..6876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870506.307396-UTR-A-nodosum_M_contig9773:6876..69431680870506.307396-UTR-A-nodosum_M_contig9773:6876..6943Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9773 6877..6943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9773.2.1prot_A-nodosum_M_contig9773.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9773 6673..6876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9773.2.1

>prot_A-nodosum_M_contig9773.2.1 ID=prot_A-nodosum_M_contig9773.2.1|Name=mRNA_A-nodosum_M_contig9773.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=68bp
NFTYRHRAGVSPYTSSCELAETCVFNKQSPPPILCQRLKLSPKSLLLIPK
LQSHFAEFLQQGYLKAP*
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mRNA from alignment at A-nodosum_M_contig9773:6673..6943+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9773.2.1 ID=mRNA_A-nodosum_M_contig9773.2.1|Name=mRNA_A-nodosum_M_contig9773.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=271bp|location=Sequence derived from alignment at A-nodosum_M_contig9773:6673..6943+ (Ascophyllum nodosum dioecious)
AACTTCACCTACCGGCACCGGGCAGGTGTCAGTCCCTATACATCCTCTTG CGAGTTAGCAGAGACCTGTGTTTTTAATAAACAGTCGCCACCCCCGATTT TGTGTCAAAGATTGAAGCTTTCGCCTAAATCTTTACTCCTTATTCCGAAG TTACAGAGTCATTTTGCCGAGTTCCTTCAACAAGGTTATCTCAAAGCCCC TTAGTGTTCTCCACCCGTCCACCTGTGGCGGTTTGCTGTACGGTTTTTGT AAAGCACGTTTTTCTTGGAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9773:6673..6943+

>mRNA_A-nodosum_M_contig9773.2.1 ID=mRNA_A-nodosum_M_contig9773.2.1|Name=mRNA_A-nodosum_M_contig9773.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig9773:6673..6943+ (Ascophyllum nodosum dioecious)
AACTTCACCTACCGGCACCGGGCAGGTGTCAGTCCCTATACATCCTCTTG
CGAGTTAGCAGAGACCTGTGTTTTTAATAAACAGTCGCCACCCCCGATTT
TGTGTCAAAGATTGAAGCTTTCGCCTAAATCTTTACTCCTTATTCCGAAG
TTACAGAGTCATTTTGCCGAGTTCCTTCAACAAGGTTATCTCAAAGCCCC
TTAG
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