mRNA_A-nodosum_M_contig9765.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9765.1.1
Unique NamemRNA_A-nodosum_M_contig9765.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9765.1.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.290e-9
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 QPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVLEHMAMQAVVNGFIMLEKW 174
            QP  R++Y + +GGVDV DQ+   +   HRPM +FW RVL+    QAV N +++  +W
Sbjct:  182 QPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQKFAQAVSNAWLLFFEW 239
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9765.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGW0_9PHAE3.290e-943.10DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9765contigA-nodosum_M_contig9765:5028..5270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870504.8390813-CDS-A-nodosum_M_contig9765:5027..52701680870504.8390813-CDS-A-nodosum_M_contig9765:5027..5270Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9765 5028..5270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9765.1.1prot_A-nodosum_M_contig9765.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9765 5028..5270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9765.1.1

>prot_A-nodosum_M_contig9765.1.1 ID=prot_A-nodosum_M_contig9765.1.1|Name=mRNA_A-nodosum_M_contig9765.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=81bp
QPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVLEHMAMQAVVN
GFIMLEKWRAMTIAKVDERIAYMLSQKKNIG
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mRNA from alignment at A-nodosum_M_contig9765:5028..5270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9765.1.1 ID=mRNA_A-nodosum_M_contig9765.1.1|Name=mRNA_A-nodosum_M_contig9765.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig9765:5028..5270+ (Ascophyllum nodosum dioecious)
CAGCCTCCCGTTCGGCGAGACTACTGCCGGTGCATGGGTGGGGTAGACGT
CACCGACCAGAAGGCGGGGACGTATCTTTGTCCCCACCGCCCTATGAACT
ACTTTTGGAGGCGTGTTCTCGAGCACATGGCCATGCAAGCGGTCGTAAAT
GGTTTCATTATGCTTGAAAAATGGAGGGCAATGACGATTGCAAAAGTAGA
TGAGCGTATCGCATATATGCTCTCCCAAAAAAAGAACATAGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9765:5028..5270+

>mRNA_A-nodosum_M_contig9765.1.1 ID=mRNA_A-nodosum_M_contig9765.1.1|Name=mRNA_A-nodosum_M_contig9765.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=243bp|location=Sequence derived from alignment at A-nodosum_M_contig9765:5028..5270+ (Ascophyllum nodosum dioecious)
CAGCCTCCCGTTCGGCGAGACTACTGCCGGTGCATGGGTGGGGTAGACGT
CACCGACCAGAAGGCGGGGACGTATCTTTGTCCCCACCGCCCTATGAACT
ACTTTTGGAGGCGTGTTCTCGAGCACATGGCCATGCAAGCGGTCGTAAAT
GGTTTCATTATGCTTGAAAAATGGAGGGCAATGACGATTGCAAAAGTAGA
TGAGCGTATCGCATATATGCTCTCCCAAAAAAAGAACATAGGA
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