mRNA_A-nodosum_M_contig976.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig976.14.1
Unique NamemRNA_A-nodosum_M_contig976.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig976.14.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 8.710e-8
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    4 DGSDTSVKYIAHGSLPEGILEITTPNRILADVE----NANKNGSGDG--PSDTTVLAVAKTTA 174
            DGS + + YI+HGSLP+GI E TTPNRILADV     N  + GS DG  P +  +L  A+  A
Sbjct:  381 DGSASEITYISHGSLPDGIPETTTPNRILADVNTRTNNLREGGSVDGATPDERALLGAAQAIA 443
[Close]
BLAST of mRNA_A-nodosum_M_contig976.14.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.470e-6
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    4 DGSDTSVKYIAHGSLPEGILEITTPNRILADVE----NANKNGSGDG--PSDTTVLAVAKTTA 174
            DG  + + YI+HGSLP+GI EITTP+RILADV     N  + G  DG  P +  +L  A+  A
Sbjct:  882 DGDASEITYISHGSLPDGIPEITTPHRILADVNTRTNNLREGGRVDGTTPDERALLGAAQAIA 944
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig976.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ29_ECTSI8.710e-850.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE1.470e-647.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig976contigA-nodosum_M_contig976:208334..208524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size191
Hectar predicted targeting categoryother localisation
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870504.7611563-CDS-A-nodosum_M_contig976:208335..2085241680870504.7611563-CDS-A-nodosum_M_contig976:208335..208524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 208336..208524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig976.14.1prot_A-nodosum_M_contig976.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig976 208336..208524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig976.14.1

>prot_A-nodosum_M_contig976.14.1 ID=prot_A-nodosum_M_contig976.14.1|Name=mRNA_A-nodosum_M_contig976.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
RDGSDTSVKYIAHGSLPEGILEITTPNRILADVENANKNGSGDGPSDTTV
LAVAKTTANTPGH
back to top

mRNA from alignment at A-nodosum_M_contig976:208334..208524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig976.14.1 ID=mRNA_A-nodosum_M_contig976.14.1|Name=mRNA_A-nodosum_M_contig976.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=191bp|location=Sequence derived from alignment at A-nodosum_M_contig976:208334..208524- (Ascophyllum nodosum dioecious)
CGAGACGGATCGGATACCAGCGTGAAGTACATTGCCCACGGCTCACTGCC
AGAGGGTATCCTGGAGATCACGACGCCTAACCGTATTCTTGCTGACGTCG
AAAATGCAAATAAGAATGGCAGTGGCGATGGTCCATCTGACACGACTGTT
CTAGCGGTTGCAAAAACGACTGCTAACACCCCAGGACACAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig976:208334..208524-

>mRNA_A-nodosum_M_contig976.14.1 ID=mRNA_A-nodosum_M_contig976.14.1|Name=mRNA_A-nodosum_M_contig976.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig976:208334..208524- (Ascophyllum nodosum dioecious)
CGAGACGGATCGGATACCAGCGTGAAGTACATTGCCCACGGCTCACTGCC
AGAGGGTATCCTGGAGATCACGACGCCTAACCGTATTCTTGCTGACGTCG
AAAATGCAAATAAGAATGGCAGTGGCGATGGTCCATCTGACACGACTGTT
CTAGCGGTTGCAAAAACGACTGCTAACACCCCAGGACAC
back to top