mRNA_A-nodosum_M_contig976.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig976.12.1
Unique NamemRNA_A-nodosum_M_contig976.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig976.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig976contigA-nodosum_M_contig976:205695..207669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870504.1166618-CDS-A-nodosum_M_contig976:205694..2057721680870504.1166618-CDS-A-nodosum_M_contig976:205694..205772Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 205695..205772 +
1680870504.1394515-CDS-A-nodosum_M_contig976:207582..2076691680870504.1394515-CDS-A-nodosum_M_contig976:207582..207669Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig976 207583..207669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig976.12.1prot_A-nodosum_M_contig976.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig976 205695..207669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig976.12.1

>prot_A-nodosum_M_contig976.12.1 ID=prot_A-nodosum_M_contig976.12.1|Name=mRNA_A-nodosum_M_contig976.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
ASGDLEAPCSWHSSLARRYVDAFSFLIAGDFMRHMSCGRVVPRGVVCGAC
LRDL*
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mRNA from alignment at A-nodosum_M_contig976:205695..207669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig976.12.1 ID=mRNA_A-nodosum_M_contig976.12.1|Name=mRNA_A-nodosum_M_contig976.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1975bp|location=Sequence derived from alignment at A-nodosum_M_contig976:205695..207669+ (Ascophyllum nodosum dioecious)
GCCTCAGGTGATCTTGAGGCTCCATGTTCGTGGCACAGCTCTCTGGCTCG
GCGATATGTGGACGCTTTTAGCTTCTTGGCAAGTGATACGAGTCAGTTGT
TTGTGGACTGGACTGTCTTTTTAACGGCCAATCAAATAGTGGTTAGACGG
GATTTAGTCAATGAAGAAACAATTTATTAGTTCGCGTCAGTACTACTACT
ACGCCTTGGGTCATCGGTGAAGCAGAGGTTGAGGCCGTAAGGTCTTCTTA
GTCGGGGTGTATCACTCTCTCACGGTTGTTTGGGGGGCATATTCCGCTTA
TTATTTATTATTGGCGTGCGCTTTTTGTTTTGTCTTCGGCTTGGTAACGA
TTGTGTCAAAAAAAATGTTGACCTTTCTGCTTTAATCTATTATTAGGTAG
GCAAGGCAAAAAATTGAGCTATGGAGTTTAGAAAAAAATGGAACGCATCT
AAATCTTCTCAGCATCTACCTCAAGTGGAAGAGTGTTTGAAGGTTTAGAT
GGGAACATTAGCTGTAGAGACAAAACCTCTTCATGGTATCAAAAGGGTTC
CCCAATGTAACTACATCGGGTCGACAGTATAATATCGGGGAGAAGCCCTC
CGTTATACTATACACTTGTTGTTACATTATTATTTTTTCCATGCAGGGAC
ACCAAAACCACAATATTTTTTATGTAAGAGTCCTGGACTACAGACAGTGT
AGTAATATGGTCTTATATGATCTTAGAGAGGTTAAAGTTAAATTTAGTTG
TTCTTGCCCCGTATCTTTCTTTTCCTTGCGACGTGATGTAGGCTACAAAG
CAAAAAGAAGGTTGGTGGCGCTGGAGGACAGGGGGCTGGGGGGAGGGTGC
GACCTCCAGAACGACACTGAATAGCAAAGGGTGATGCGTTCGTTGTTTTT
CATCTACACGCCACGCGAGCTGGTGTGTTGTTGTTCCGTGCAGTCTACAT
CAACTTACTTTTTATTTTTTATTTTTGTTATTACGCTGGCAATAAAAAAG
ACAAGAAGAAGACCCTTCTGGGATACATCCCGACGACTATAATAACCAAC
ACCATGATCATTGTTTAAGGACTCGTAACATACATATACCTCACTTTTCA
GCCGAGAACCACCGGCAACACCAAATAGTTCAGCGTAAATGAATTTAGCT
TGAGTGTTTTCCATCGAGAGACAAGCTACTACAGACAACTATTATTGATG
CACGAAGACTAACTCTTCTCTTTTACGCGAGCCCCGACCCCTGCAACACT
ACAAATACTACAGAAACACTCCATTATTTAAGAAAATAGTTCCGTTCTTC
CTTCCCCAAGCCCGACGTATAAGTTGTCCTCCTAGAGATTATAAATAAAG
TTGATCTCATGCCTTCACCTCCCGCTACATCTCGAACGAAAACTACTAAG
CGAATGATACCCACCCACCAAAAAACCCCAAGACGGATGACTCTTCTTCA
CTAATATTAGTTGTGATCTACCAAGCCCTAGAGATTAGAAATAAATTAAA
GCTGATCTTATTATGCCTTCACCCTCTCGCTACATCATCTGTATCTTGAA
CGAAAACTAGTAAGCGAATGACACCCACCCACCAAAAAAAAAGCAAGACG
GATAACTCTTCTTCACTTATATTAGTTGTGGTCTTCTTGCGCCACGCTAT
AGTAGTAGCACTCTTCGCGGCATTAGAAGAAGCTTGTGATCCTACCTCCG
ACCCTCCAGCAGAGGCGTCATGGTACCACCCTAGACGGACGACGCTCACA
CCAGGAATGACCTTGACAATAGCACCCGAGTCGCAGCGTCGATCACTCTG
AAGACATTTAATTTTGCCGGTGCTGGCGCTCCCCTTCTTTGTCGATGAAG
GATCTTAACAGCGTCTCGCGCGTGTCGCTCCTCTTCAGATAGCTGGAGAC
TTCATGCGCCACATGTCCTGTGGGCGAGTCGTCCCACGTGGCGTAGTATG
CGGGGCATGTCTGCGCGACTTGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig976:205695..207669+

>mRNA_A-nodosum_M_contig976.12.1 ID=mRNA_A-nodosum_M_contig976.12.1|Name=mRNA_A-nodosum_M_contig976.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig976:205695..207669+ (Ascophyllum nodosum dioecious)
GCCTCAGGTGATCTTGAGGCTCCATGTTCGTGGCACAGCTCTCTGGCTCG
GCGATATGTGGACGCTTTTAGCTTCTTGATAGCTGGAGACTTCATGCGCC
ACATGTCCTGTGGGCGAGTCGTCCCACGTGGCGTAGTATGCGGGGCATGT
CTGCGCGACTTGTAG
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