mRNA_A-nodosum_M_contig9752.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9752.2.1
Unique NamemRNA_A-nodosum_M_contig9752.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A6H5K2D2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D2_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 3.890e-107
Identity = 185/266 (69.55%), Postives = 198/266 (74.44%), Query Frame = 1
Query:   10 LVCAEYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVT--------------------------------VEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRR----LEKRIYIPLPTDIGRKELFRINLGDVEV 699
            +V +E  ERDIV++ VSVTWD+IADL+DAKQLLQEAVVLP WMPDYF GIRRPWKG          VLM+GPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEK+VR+LFEMARYYAP      TIFFDEIDSLAG RGSDGEHEASRR+KTEL+VQMDGVT                                    XXXXXXXXX    LAATNTPW LDEALRRR    LEKRIYIPLPT++GRKELFRINLGDVEV
Sbjct:    1 MVSSEAKERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKMVRVLFEMARYYAPS-----TIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRRRVQRRLEKRIYIPLPTEVGRKELFRINLGDVEV 251          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: D8LRZ3_ECTSI (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ3_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 2.460e-103
Identity = 184/258 (71.32%), Postives = 195/258 (75.58%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVT--------------------------------VEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            E  ERDIV++ VSVTWD+IADL+DAKQLLQEAVVLP WMPDYF GIRRPWKG          VLM+GPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEK+VR+LFEMARYYAP      TIFFDEIDSLAG RGSDGEHEASRR+KTEL+VQMDGVT                                    XXXXXXXXX    LAATNTPW LDEALRRRLEKRIYIPLPT++GRKELFRINLGDVEV
Sbjct:  437 ESLERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKMVRVLFEMARYYAPS-----TIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRRRLEKRIYIPLPTEVGRKELFRINLGDVEV 679          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A7S3YD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD60_HETAK)

HSP 1 Score: 300 bits (768), Expect = 3.170e-99
Identity = 167/225 (74.22%), Postives = 183/225 (81.33%), Query Frame = 1
Query:   34 RDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVT---VEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            RDIV++ V  TWD IA L++AKQLLQEAVVLP WMP+YF GIRRPWKG          VLM+GPPGTGKT+LAKAVAAEC+TTFFNVSASTL SKYRG+SEK+VRILFEMARYYAP      TIFFDEIDSLAG RGS  EHEASRR+KTEL+VQMDGVT    +  XXXXXXXXXX   LAATN PWDLDEALRRRLEKRIYIPLP   GR+ELFRIN+ D +V
Sbjct:    1 RDIVEQGVVTTWDSIAGLKEAKQLLQEAVVLPLWMPEYFQGIRRPWKG----------VLMFGPPGTGKTLLAKAVAAECRTTFFNVSASTLSSKYRGDSEKMVRILFEMARYYAPS-----TIFFDEIDSLAGSRGSSSEHEASRRVKTELMVQMDGVTETSADXXXXXXXXXXXXVIVLAATNMPWDLDEALRRRLEKRIYIPLPCAEGRRELFRINMKDCDV 210          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: F0Y1I1_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I1_AURAN)

HSP 1 Score: 297 bits (761), Expect = 5.080e-98
Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXX----LAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            E  ERDIV+  VSVTWDEIA+L++AKQLLQEAVVLP WMPD+F GIRRPWKG          VLM+GPPGTGKTMLAKAVAAECKTTFFNVSASTL SK+RGESEK+VR+LF+MAR++AP      T+FFDEIDSLAG RG   EHEASRR+KTEL+VQMDGV   +G                 LAATNTPW+LDEALRRRLEKRIYIPLPT  GR  LF IN+  V+V
Sbjct:    6 EGIERDIVETGVSVTWDEIAELKEAKQLLQEAVVLPLWMPDFFRGIRRPWKG----------VLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLSSKWRGESEKMVRLLFDMARWHAPS-----TVFFDEIDSLAGQRGGANEHEASRRVKTELMVQMDGVAGGSGDAPEDAGAEAAPRTVIVLAATNTPWELDEALRRRLEKRIYIPLPTAAGRAALFEINMKSVDV 220          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A7S2SSB0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB0_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.630e-97
Identity = 157/234 (67.09%), Postives = 179/234 (76.50%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEA--------GXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            E  ERDIVD  V+V WD+IADL +AK LLQEAVVLP WMPDYF GIRRPW+G          VLM+GPPGTGKTMLAKA+A+EC+TTFFNVSAS+LGSKYRGESEK+VR+LFEMARYYAP      TIFFDEID++AG RGS+GEHEASRR+KTEL+VQMDGV+  A                      LAATN PWDLD+ALRRRLEKRIYIPLP+  GR ELFRIN+ D+E+
Sbjct:  251 ETLERDIVDHGVAVGWDQIADLAEAKALLQEAVVLPLWMPDYFKGIRRPWRG----------VLMFGPPGTGKTMLAKAIASECRTTFFNVSASSLGSKYRGESEKMVRVLFEMARYYAPS-----TIFFDEIDAIAGARGSEGEHEASRRVKTELMVQMDGVSSAADTEDGEQENEEENGPGKRTVIVLAATNRPWDLDDALRRRLEKRIYIPLPSTSGRAELFRINMHDIEL 469          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: UPI001896064E (LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001896064E)

HSP 1 Score: 292 bits (747), Expect = 7.670e-96
Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEVCSTL 711
            E  ERDI+ ++ SV WD+IADL +AK+LL+EAVVLP WMPD+F GIRRPWKG          VLM GPPGTGKTMLAKAVA EC TTFFNVS+STL SKYRGESEK+VR+LFEMAR++AP      TIF DEIDSL   RGSD EHEASRR+K+ELL+QMDG+T                 LAATN PWD+DEALRRRLEKRIYIPLP   GR+ L RINL DVEVC  L
Sbjct:   28 ELLERDILQRNPSVRWDDIADLHEAKKLLEEAVVLPMWMPDFFKGIRRPWKG----------VLMVGPPGTGKTMLAKAVATECSTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFHAPS-----TIFIDEIDSLCSRRGSDSEHEASRRVKSELLIQMDGIT------NNEDPAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPNSAGREALLRINLKDVEVCPEL 236          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: W7U5R9_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5R9_9STRA)

HSP 1 Score: 301 bits (771), Expect = 2.710e-95
Identity = 157/238 (65.97%), Postives = 178/238 (74.79%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXX------------LAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            E  ER+IV++ V+V+WD IADL++AKQLLQEAVVLP WMPDYF GIRRPWKG          VL++GPPGTGKTMLAKAVA EC TTFFNVSASTLGSKYRG+SEK+VRILFEMARYYAP      T+FFDEIDS+AG RG  GEHEASRR+KTEL+VQMDGV   +                          LAATN PWDLD+ALRRR+EKRIYI LPT+ GRKELFRIN+ D+EV
Sbjct:  339 ESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPS-----TLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEV 561          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A4D9D8G0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8G0_9STRA)

HSP 1 Score: 302 bits (774), Expect = 9.590e-94
Identity = 159/238 (66.81%), Postives = 181/238 (76.05%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGV-------TVE-----AGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            E  ER+IV++ V+V+WD IADL++AKQLLQEAVVLP WMPDYF GIRRPWKG          VL++GPPGTGKTMLAKAVA EC TTFFNVSASTLGSKYRG+SEK+VRILFEMARYYAP      T+FFDEIDS+AG RG  GEHEASRR+KTEL+VQMDGV       +V+     A              LAATN PWDLD+ALRRR+EKRIYI LPT+ GRKELFRIN+ D+EV
Sbjct:  339 ESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPS-----TLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAADEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEV 561          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A224YS29_9ACAR (Katanin p60 ATPase-containing subunit A1 n=5 Tax=Ixodidae TaxID=6939 RepID=A0A224YS29_9ACAR)

HSP 1 Score: 292 bits (747), Expect = 1.530e-93
Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 1
Query:   22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEVCSTL 711
            E  ERDI+ ++ SV WD+IADL +AK+LL+EAVVLP WMPD+F GIRRPWKG          VLM GPPGTGKTMLAKAVA EC TTFFNVS+STL SKYRGESEK+VR+LFEMAR++AP      TIF DEIDSL   RGSD EHEASRR+K+ELL+QMDG+T                 LAATN PWD+DEALRRRLEKRIYIPLP   GR+ L RINL DVEVC  L
Sbjct:  203 ELLERDILQRNPSVRWDDIADLHEAKKLLEEAVVLPMWMPDFFKGIRRPWKG----------VLMVGPPGTGKTMLAKAVATECSTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFHAPS-----TIFIDEIDSLCSRRGSDSEHEASRRVKSELLIQMDGIT------NNEDPAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPNSAGREALLRINLKDVEVCPEL 411          
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A3B4ZQ95_9TELE (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZQ95_9TELE)

HSP 1 Score: 288 bits (738), Expect = 1.560e-93
Identity = 150/223 (67.26%), Postives = 170/223 (76.23%), Query Frame = 1
Query:   31 ERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
            ERDIV ++ +V WD+IADL DAK+LL+EAVVLP WMPD+F GIRRPWKG          VLM GPPGTGKTMLAKAVA EC TTFFNVS+STL SKYRGESEK+VR+LFEMAR+YAP      TIF DEIDS+ G RG+  EHEASRR+K+ELL+QMDGV    G             LAATN PWD+DEALRRRLEKRIYIPLPT +GR EL +INL +VEV
Sbjct:   97 ERDIVSRNPNVHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKG----------VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT-----TIFIDEIDSICGRRGTSDEHEASRRVKSELLIQMDGV---GGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAVGRVELLKINLREVEV 301          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2D2_9PHAE3.890e-10769.55AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRZ3_ECTSI2.460e-10371.32Katanin p60 ATPase-containing subunit A1 n=1 Tax=E... [more]
A0A7S3YD60_HETAK3.170e-9974.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y1I1_AURAN5.080e-9868.26AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S2SSB0_9STRA1.630e-9767.09Katanin p60 ATPase-containing subunit A1 n=1 Tax=R... [more]
UPI001896064E7.670e-9666.09LOW QUALITY PROTEIN: katanin p60 ATPase-containing... [more]
W7U5R9_9STRA2.710e-9565.97Katanin p60 ATPase-containing subunit A1 n=1 Tax=N... [more]
A0A4D9D8G0_9STRA9.590e-9466.81Katanin p60 ATPase-containing subunit A1 n=1 Tax=N... [more]
A0A224YS29_9ACAR1.530e-9366.09Katanin p60 ATPase-containing subunit A1 n=5 Tax=I... [more]
A0A3B4ZQ95_9TELE1.560e-9367.26Katanin p60 ATPase-containing subunit A1 n=1 Tax=S... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9752contigA-nodosum_M_contig9752:13547..15199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRZ3
Preferred nameKATNA1
PFAMsAAA,Vps4_C
Model size714
Max annot lvl2759|Eukaryota
KEGG koko:K07767
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.04e-104
EggNOG OGsCOG0554@1|root,KOG0738@2759|Eukaryota
EC3.6.4.3
Descriptionmicrotubule-severing ATPase activity
Cds size714
COG categoryC
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870503.7550797-CDS-A-nodosum_M_contig9752:13546..136491680870503.7550797-CDS-A-nodosum_M_contig9752:13546..13649Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9752 13547..13649 -
1680870503.7677712-CDS-A-nodosum_M_contig9752:14031..142441680870503.7677712-CDS-A-nodosum_M_contig9752:14031..14244Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9752 14032..14244 -
1680870503.7786388-CDS-A-nodosum_M_contig9752:14655..148481680870503.7786388-CDS-A-nodosum_M_contig9752:14655..14848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9752 14656..14848 -
1680870503.790697-CDS-A-nodosum_M_contig9752:14994..151991680870503.790697-CDS-A-nodosum_M_contig9752:14994..15199Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9752 14995..15199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9752.2.1prot_A-nodosum_M_contig9752.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9752 13547..15199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9752.2.1

>prot_A-nodosum_M_contig9752.2.1 ID=prot_A-nodosum_M_contig9752.2.1|Name=mRNA_A-nodosum_M_contig9752.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=238bp
MRALVCAEYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYF
CGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSA
STLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSD
GEHEASRRLKTELLVQMDGVTVEAGGGGAGGSSKTVIVLAATNTPWDLDE
ALRRRLEKRIYIPLPTDIGRKELFRINLGDVEVCSTL*
back to top

mRNA from alignment at A-nodosum_M_contig9752:13547..15199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9752.2.1 ID=mRNA_A-nodosum_M_contig9752.2.1|Name=mRNA_A-nodosum_M_contig9752.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1653bp|location=Sequence derived from alignment at A-nodosum_M_contig9752:13547..15199- (Ascophyllum nodosum dioecious)
ATGCGTGCGCTTGTTTGCGCTGAGTATGCAGAGAGGGACATCGTCGATAA GAGCGTCTCCGTTACGTGGGATGAGATCGCGGACCTGAGGGACGCAAAGC AACTCCTCCAGGAGGCGGTCGTGTTGCCCCAGTGGATGCCTGACTACTTT TGTGGGATCCGACGGCCGTGGAAAGGCGAGAAATGCACGTCTGGCCATAA CGCGCGTTGGCATTCTAGCTGAAGTAATTTTGTGTCGTTTCGTTTCGCTT CCTTTCGTTTCAATTCATATTATTTGCTTACGGTACGCCACGACAGCTCT TGAAACGTCCTCTCAGACAAGATCGGCCCATCGTGCATCGGGTTTCCACA GGCGTTTTGATGTACGGACCACCGGGGACGGGTAAGACGATGCTCGCCAA AGCCGTCGCGGCAGAGTGCAAAACAACGTTCTTCAACGTAAGCGCTTCGA CGCTGGGCTCGAAGTACCGCGGAGAATCGGAGAAAATAGTGCGGATTCTG TTCGAGATGGCCCGTTACTACGCTCCCAGGCAAGGCCAAGCGCGGTATGA GTAGGAGTCGCGATGGGATGTCAACAGTTGTTTGATATGTAGTCCTCTTC GCGCCATGCTCTTCGTGAGTGACATCTAACCCGGCCAACGTCATTCGACG GGGCTTCGTTGTATGAAAGCGTTCGTTCGTGGGTTCTCATAACGTCGGCA TCACCGCTACATTACACGGTGTTTCTCGAAAAACAGGTAAGAGGCTCTGC AGGAATCTATTGGCGTCTATATGTATGGGGTCCGCCCTGGCCCTGAAGTT TAAACTACTTTTTTTACTATCCTTTTCTGTCCTTTCTTCTCTTTTCCCCC TACCGTTTGCCGTAAACGCCCCATCGCCTCGGCGGAAACTCCTTTTCAAT ACCCCCCCGCCCCCCGCCCCCTCCTTCACCTTGAACACCTTTGATTCCCC CACAGCACGATTTTCTTTGATGAGATTGACTCCCTGGCGGGGTGCCGTGG AAGCGACGGCGAGCATGAGGCGAGCCGCCGCCTCAAGACGGAATTACTCG TCCAAATGGACGGCGTTACCGTAGAGGCCGGGGGCGGGGGTGCCGGCGGG AGCTCGAAGACGGTGATCGTCCTCGCGGCCACCAACACGCCGTGGGATCT CGACGAAGCTCTCCGAAGGTGTGTATGTGTGTGTGAGAGAGAGGGAGGGA GGGATAGAGAGTTTGTGCATGTTTCGAACGTTTTGCCTCCCGACCGTGTT CTCTTCCGATTGACACGCACGCAGCCAGTCTTCTTGTGTTTTTTTCTTCT CCTCTTTATTTATCCTTGATGTCTCATCCTCGGGCCAACAGAGCATTCAA AAAGATAAGGGCGTTTCTTCCAGCGTGGTTGTCGTTGTCGTCGTTGTTAT GCCCCTCGCGACCCTTTTTGTGGCCCGACTGTGGCGACCTCGCGCTACCC TGAAAGTCTCTTTTTGTGACCACCCGTCGTCGTCTCTTCGTTCTCGTGAT CTCGGACGCATGGGTCCCGGCGGACGGGTGGGCCGTTTGTTGTGCGTCAG GCGGCTGGAGAAGCGGATTTATATCCCGCTGCCCACGGACATCGGTCGGA AGGAGCTCTTCCGCATTAACCTCGGGGACGTTGAGGTATGCAGTACATTA TAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9752:13547..15199-

>mRNA_A-nodosum_M_contig9752.2.1 ID=mRNA_A-nodosum_M_contig9752.2.1|Name=mRNA_A-nodosum_M_contig9752.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at A-nodosum_M_contig9752:13547..15199- (Ascophyllum nodosum dioecious)
ATGCGTGCGCTTGTTTGCGCTGAGTATGCAGAGAGGGACATCGTCGATAA
GAGCGTCTCCGTTACGTGGGATGAGATCGCGGACCTGAGGGACGCAAAGC
AACTCCTCCAGGAGGCGGTCGTGTTGCCCCAGTGGATGCCTGACTACTTT
TGTGGGATCCGACGGCCGTGGAAAGGCGAGAAATGCACGTCTGGCCATAA
CGCGCGCGTTTTGATGTACGGACCACCGGGGACGGGTAAGACGATGCTCG
CCAAAGCCGTCGCGGCAGAGTGCAAAACAACGTTCTTCAACGTAAGCGCT
TCGACGCTGGGCTCGAAGTACCGCGGAGAATCGGAGAAAATAGTGCGGAT
TCTGTTCGAGATGGCCCGTTACTACGCTCCCAGGCAAGGCCAAGCGCGCA
CGATTTTCTTTGATGAGATTGACTCCCTGGCGGGGTGCCGTGGAAGCGAC
GGCGAGCATGAGGCGAGCCGCCGCCTCAAGACGGAATTACTCGTCCAAAT
GGACGGCGTTACCGTAGAGGCCGGGGGCGGGGGTGCCGGCGGGAGCTCGA
AGACGGTGATCGTCCTCGCGGCCACCAACACGCCGTGGGATCTCGACGAA
GCTCTCCGAAGGCGGCTGGAGAAGCGGATTTATATCCCGCTGCCCACGGA
CATCGGTCGGAAGGAGCTCTTCCGCATTAACCTCGGGGACGTTGAGGTAT
GCAGTACATTATAG
back to top