mRNA_A-nodosum_M_contig9752.2.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A6H5K2D2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D2_9PHAE) HSP 1 Score: 322 bits (824), Expect = 3.890e-107 Identity = 185/266 (69.55%), Postives = 198/266 (74.44%), Query Frame = 1
Query: 10 LVCAEYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVT--------------------------------VEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRR----LEKRIYIPLPTDIGRKELFRINLGDVEV 699
+V +E ERDIV++ VSVTWD+IADL+DAKQLLQEAVVLP WMPDYF GIRRPWKG VLM+GPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEK+VR+LFEMARYYAP TIFFDEIDSLAG RGSDGEHEASRR+KTEL+VQMDGVT XXXXXXXXX LAATNTPW LDEALRRR LEKRIYIPLPT++GRKELFRINLGDVEV
Sbjct: 1 MVSSEAKERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKMVRVLFEMARYYAPS-----TIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRRRVQRRLEKRIYIPLPTEVGRKELFRINLGDVEV 251
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: D8LRZ3_ECTSI (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ3_ECTSI) HSP 1 Score: 325 bits (833), Expect = 2.460e-103 Identity = 184/258 (71.32%), Postives = 195/258 (75.58%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVT--------------------------------VEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
E ERDIV++ VSVTWD+IADL+DAKQLLQEAVVLP WMPDYF GIRRPWKG VLM+GPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEK+VR+LFEMARYYAP TIFFDEIDSLAG RGSDGEHEASRR+KTEL+VQMDGVT XXXXXXXXX LAATNTPW LDEALRRRLEKRIYIPLPT++GRKELFRINLGDVEV
Sbjct: 437 ESLERDIVERGVSVTWDQIADLKDAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKMVRVLFEMARYYAPS-----TIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRRRLEKRIYIPLPTEVGRKELFRINLGDVEV 679
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A7S3YD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD60_HETAK) HSP 1 Score: 300 bits (768), Expect = 3.170e-99 Identity = 167/225 (74.22%), Postives = 183/225 (81.33%), Query Frame = 1
Query: 34 RDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVT---VEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
RDIV++ V TWD IA L++AKQLLQEAVVLP WMP+YF GIRRPWKG VLM+GPPGTGKT+LAKAVAAEC+TTFFNVSASTL SKYRG+SEK+VRILFEMARYYAP TIFFDEIDSLAG RGS EHEASRR+KTEL+VQMDGVT + XXXXXXXXXX LAATN PWDLDEALRRRLEKRIYIPLP GR+ELFRIN+ D +V
Sbjct: 1 RDIVEQGVVTTWDSIAGLKEAKQLLQEAVVLPLWMPEYFQGIRRPWKG----------VLMFGPPGTGKTLLAKAVAAECRTTFFNVSASTLSSKYRGDSEKMVRILFEMARYYAPS-----TIFFDEIDSLAGSRGSSSEHEASRRVKTELMVQMDGVTETSADXXXXXXXXXXXXVIVLAATNMPWDLDEALRRRLEKRIYIPLPCAEGRRELFRINMKDCDV 210
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: F0Y1I1_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I1_AURAN) HSP 1 Score: 297 bits (761), Expect = 5.080e-98 Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXX----LAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
E ERDIV+ VSVTWDEIA+L++AKQLLQEAVVLP WMPD+F GIRRPWKG VLM+GPPGTGKTMLAKAVAAECKTTFFNVSASTL SK+RGESEK+VR+LF+MAR++AP T+FFDEIDSLAG RG EHEASRR+KTEL+VQMDGV +G LAATNTPW+LDEALRRRLEKRIYIPLPT GR LF IN+ V+V
Sbjct: 6 EGIERDIVETGVSVTWDEIAELKEAKQLLQEAVVLPLWMPDFFRGIRRPWKG----------VLMFGPPGTGKTMLAKAVAAECKTTFFNVSASTLSSKWRGESEKMVRLLFDMARWHAPS-----TVFFDEIDSLAGQRGGANEHEASRRVKTELMVQMDGVAGGSGDAPEDAGAEAAPRTVIVLAATNTPWELDEALRRRLEKRIYIPLPTAAGRAALFEINMKSVDV 220
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A7S2SSB0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB0_9STRA) HSP 1 Score: 304 bits (779), Expect = 1.630e-97 Identity = 157/234 (67.09%), Postives = 179/234 (76.50%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEA--------GXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
E ERDIVD V+V WD+IADL +AK LLQEAVVLP WMPDYF GIRRPW+G VLM+GPPGTGKTMLAKA+A+EC+TTFFNVSAS+LGSKYRGESEK+VR+LFEMARYYAP TIFFDEID++AG RGS+GEHEASRR+KTEL+VQMDGV+ A LAATN PWDLD+ALRRRLEKRIYIPLP+ GR ELFRIN+ D+E+
Sbjct: 251 ETLERDIVDHGVAVGWDQIADLAEAKALLQEAVVLPLWMPDYFKGIRRPWRG----------VLMFGPPGTGKTMLAKAIASECRTTFFNVSASSLGSKYRGESEKMVRVLFEMARYYAPS-----TIFFDEIDAIAGARGSEGEHEASRRVKTELMVQMDGVSSAADTEDGEQENEEENGPGKRTVIVLAATNRPWDLDDALRRRLEKRIYIPLPSTSGRAELFRINMHDIEL 469
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: UPI001896064E (LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001896064E) HSP 1 Score: 292 bits (747), Expect = 7.670e-96 Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEVCSTL 711
E ERDI+ ++ SV WD+IADL +AK+LL+EAVVLP WMPD+F GIRRPWKG VLM GPPGTGKTMLAKAVA EC TTFFNVS+STL SKYRGESEK+VR+LFEMAR++AP TIF DEIDSL RGSD EHEASRR+K+ELL+QMDG+T LAATN PWD+DEALRRRLEKRIYIPLP GR+ L RINL DVEVC L
Sbjct: 28 ELLERDILQRNPSVRWDDIADLHEAKKLLEEAVVLPMWMPDFFKGIRRPWKG----------VLMVGPPGTGKTMLAKAVATECSTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFHAPS-----TIFIDEIDSLCSRRGSDSEHEASRRVKSELLIQMDGIT------NNEDPAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPNSAGREALLRINLKDVEVCPEL 236
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: W7U5R9_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5R9_9STRA) HSP 1 Score: 301 bits (771), Expect = 2.710e-95 Identity = 157/238 (65.97%), Postives = 178/238 (74.79%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXX------------LAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
E ER+IV++ V+V+WD IADL++AKQLLQEAVVLP WMPDYF GIRRPWKG VL++GPPGTGKTMLAKAVA EC TTFFNVSASTLGSKYRG+SEK+VRILFEMARYYAP T+FFDEIDS+AG RG GEHEASRR+KTEL+VQMDGV + LAATN PWDLD+ALRRR+EKRIYI LPT+ GRKELFRIN+ D+EV
Sbjct: 339 ESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPS-----TLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEV 561
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A4D9D8G0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8G0_9STRA) HSP 1 Score: 302 bits (774), Expect = 9.590e-94 Identity = 159/238 (66.81%), Postives = 181/238 (76.05%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGV-------TVE-----AGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
E ER+IV++ V+V+WD IADL++AKQLLQEAVVLP WMPDYF GIRRPWKG VL++GPPGTGKTMLAKAVA EC TTFFNVSASTLGSKYRG+SEK+VRILFEMARYYAP T+FFDEIDS+AG RG GEHEASRR+KTEL+VQMDGV +V+ A LAATN PWDLD+ALRRR+EKRIYI LPT+ GRKELFRIN+ D+EV
Sbjct: 339 ESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKG----------VLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPS-----TLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAADEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEV 561
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A224YS29_9ACAR (Katanin p60 ATPase-containing subunit A1 n=5 Tax=Ixodidae TaxID=6939 RepID=A0A224YS29_9ACAR) HSP 1 Score: 292 bits (747), Expect = 1.530e-93 Identity = 152/230 (66.09%), Postives = 171/230 (74.35%), Query Frame = 1
Query: 22 EYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEVCSTL 711
E ERDI+ ++ SV WD+IADL +AK+LL+EAVVLP WMPD+F GIRRPWKG VLM GPPGTGKTMLAKAVA EC TTFFNVS+STL SKYRGESEK+VR+LFEMAR++AP TIF DEIDSL RGSD EHEASRR+K+ELL+QMDG+T LAATN PWD+DEALRRRLEKRIYIPLP GR+ L RINL DVEVC L
Sbjct: 203 ELLERDILQRNPSVRWDDIADLHEAKKLLEEAVVLPMWMPDFFKGIRRPWKG----------VLMVGPPGTGKTMLAKAVATECSTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFHAPS-----TIFIDEIDSLCSRRGSDSEHEASRRVKSELLIQMDGIT------NNEDPAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPNSAGREALLRINLKDVEVCPEL 411
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Match: A0A3B4ZQ95_9TELE (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZQ95_9TELE) HSP 1 Score: 288 bits (738), Expect = 1.560e-93 Identity = 150/223 (67.26%), Postives = 170/223 (76.23%), Query Frame = 1
Query: 31 ERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFCGIRRPWKGEKCTSGHNARVLMYGPPGTGKTMLAKAVAAECKTTFFNVSASTLGSKYRGESEKIVRILFEMARYYAPRQGQARTIFFDEIDSLAGCRGSDGEHEASRRLKTELLVQMDGVTVEAGXXXXXXXXXXXXXLAATNTPWDLDEALRRRLEKRIYIPLPTDIGRKELFRINLGDVEV 699
ERDIV ++ +V WD+IADL DAK+LL+EAVVLP WMPD+F GIRRPWKG VLM GPPGTGKTMLAKAVA EC TTFFNVS+STL SKYRGESEK+VR+LFEMAR+YAP TIF DEIDS+ G RG+ EHEASRR+K+ELL+QMDGV G LAATN PWD+DEALRRRLEKRIYIPLPT +GR EL +INL +VEV
Sbjct: 97 ERDIVSRNPNVHWDDIADLEDAKKLLREAVVLPMWMPDFFKGIRRPWKG----------VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPT-----TIFIDEIDSICGRRGTSDEHEASRRVKSELLIQMDGV---GGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAVGRVELLKINLREVEV 301 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9752.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9752.2.1 >prot_A-nodosum_M_contig9752.2.1 ID=prot_A-nodosum_M_contig9752.2.1|Name=mRNA_A-nodosum_M_contig9752.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=238bp MRALVCAEYAERDIVDKSVSVTWDEIADLRDAKQLLQEAVVLPQWMPDYFback to top mRNA from alignment at A-nodosum_M_contig9752:13547..15199- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9752.2.1 ID=mRNA_A-nodosum_M_contig9752.2.1|Name=mRNA_A-nodosum_M_contig9752.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1653bp|location=Sequence derived from alignment at A-nodosum_M_contig9752:13547..15199- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9752:13547..15199- >mRNA_A-nodosum_M_contig9752.2.1 ID=mRNA_A-nodosum_M_contig9752.2.1|Name=mRNA_A-nodosum_M_contig9752.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at A-nodosum_M_contig9752:13547..15199- (Ascophyllum nodosum dioecious)back to top |