mRNA_A-nodosum_M_contig975.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig975.10.1
Unique NamemRNA_A-nodosum_M_contig975.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig975.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig975contigA-nodosum_M_contig975:149796..153462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2432
Hectar predicted targeting categoryother localisation
Exons2
Cds size1977
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870503.6404898-CDS-A-nodosum_M_contig975:149795..1498731680870503.6404898-CDS-A-nodosum_M_contig975:149795..149873Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig975 149796..149873 -
1680870503.653023-CDS-A-nodosum_M_contig975:151109..1530081680870503.653023-CDS-A-nodosum_M_contig975:151109..153008Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig975 151110..153008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870503.6641147-UTR-A-nodosum_M_contig975:153008..1534621680870503.6641147-UTR-A-nodosum_M_contig975:153008..153462Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig975 153009..153462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig975.10.1prot_A-nodosum_M_contig975.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig975 149796..153008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig975.10.1

>prot_A-nodosum_M_contig975.10.1 ID=prot_A-nodosum_M_contig975.10.1|Name=mRNA_A-nodosum_M_contig975.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=659bp
MSSASPSPTLPPATDVLLASPLNGPPVCTPSLRSTVIASPARSVLPDRSL
RLSSETPTVQSLQLNPKIEIRPQLSGSLVAPTTAPMTCASSLTERALRSQ
RRDALRALRDAAIPFPSSPMHLHEATRDFGAQIEYLTMQPSTPRQTTPIH
NHSNSVHNHSNSVPARRATMYVADHPPFTVRVIPPRVFTPLASLRASSNT
MPATTTSAASSPQKTTAASPAHTAPLPQSAFSPTPSPDLWANTGSRTGRT
PGLRPTAPVPRAAFTANGGPPPHLDHWAPVWTTLSAQQRADLTRPSLHEV
EEGLARTHVAASAASDPDRHAIDLGTAEHDRVTAPLLSRLSALRGHRATA
HTALLECQARVTAIDTQERSTAAALSAEKRRHASFLSGFSDPTPASATTV
TFVPPPVPQPTAVGASTAPTAAAAARSSASTVDTLPAQLSMQPPAPRRSH
DSSAPPLWSVVARRPPQQDNKPAPRTARYLELPVSKFMFRNSAFPSDLRI
PIKDHATEVHGTLFDLTGKRYRLDRALALATKTKTPLSEQVVNATLRLRD
LLDAACGTLSGEHWLLDALREFETARANRSDSSASDSSAPTGQRRREEPS
SGRGNAKRATFSGSDSDSSAPSGQHPEDGTRSTEKLSSGIGGPAAFKTLL
TDFADYLDR
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mRNA from alignment at A-nodosum_M_contig975:149796..153462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig975.10.1 ID=mRNA_A-nodosum_M_contig975.10.1|Name=mRNA_A-nodosum_M_contig975.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3667bp|location=Sequence derived from alignment at A-nodosum_M_contig975:149796..153462- (Ascophyllum nodosum dioecious)
TGGAGTTCACATAAGTTAAGATAGACGGTAACATATAAATTAGGGGAAAT
GACGGTTTCATAGAGAACTTTCGTGGAAAGTTCTATATCATCCCCTAATG
GAGAAAATGGTTAGGCAAATAGAACTCCTTCTGAGTTTGCAAATTGGAGC
AGCACCCACACGTTTTTAGTTCGTTCGTCTCTCTGAAAGCAATCAAGAAA
GTTTAAGCAAGCCCGAGGACTCTACCCTGAACAGCCCTTTCAGCCCGGAA
TTAAGAACTACTACGCGTGAGTCGTTCATCGTGCAAACCCTGCTTGATCA
TCTTAAAAGTGGCGTCTGACCTCCTTCCGTAGCTCTGATAAGCTGTTCAC
CGGTCGATCACCCTCGGTGTGAAATACTACGAATTTGTGTGACTGACTGC
CTCCGAACGCCCTCCGAAAATAAGCTTTTTCCCCTCCAATTCGCATCTTG
AGTCATGTCTAGTGCTTCGCCTTCGCCCACATTGCCACCCGCGACCGACG
TTCTCCTTGCATCGCCGCTTAACGGCCCTCCTGTTTGTACGCCCTCGCTT
CGCTCAACTGTTATAGCCTCGCCTGCTCGATCTGTTTTGCCTGACCGATC
GCTACGGCTCTCTTCTGAAACACCCACAGTACAAAGCTTGCAGCTAAACC
CGAAAATTGAAATTCGGCCTCAACTCTCCGGTAGCTTAGTTGCTCCCACC
ACCGCGCCAATGACTTGCGCTTCTTCGTTAACAGAGAGAGCACTACGCTC
TCAACGCCGCGACGCTTTACGTGCCTTACGTGACGCAGCTATCCCATTTC
CCTCGTCACCCATGCATCTTCATGAGGCTACACGCGATTTTGGCGCCCAA
ATTGAATATTTAACGATGCAGCCCTCGACGCCACGACAGACGACCCCTAT
ACATAACCACAGTAACTCTGTACATAACCACAGTAACTCTGTACCCGCCC
GTCGTGCGACCATGTATGTAGCTGACCATCCTCCTTTCACCGTTCGTGTG
ATCCCCCCCCGTGTTTTCACGCCCCTTGCCTCCCTGCGAGCCTCCAGTAA
CACCATGCCTGCCACTACAACTTCAGCTGCCTCTTCCCCCCAGAAGACCA
CCGCGGCTTCCCCGGCCCATACGGCTCCACTTCCCCAGTCGGCTTTTTCG
CCTACGCCTTCACCGGACCTGTGGGCCAACACGGGCTCAAGGACTGGCCG
CACTCCTGGACTCCGCCCCACAGCTCCGGTACCACGGGCAGCTTTTACCG
CCAACGGCGGCCCCCCACCCCACCTGGACCACTGGGCGCCCGTCTGGACC
ACTCTCTCCGCGCAGCAGCGCGCAGACCTCACACGGCCCTCCCTCCACGA
GGTGGAAGAGGGTCTTGCCCGCACCCACGTCGCCGCCTCTGCGGCCTCCG
ACCCCGATCGCCACGCGATCGACCTCGGCACCGCCGAGCACGACCGGGTA
ACGGCCCCACTCCTTTCAAGACTCTCCGCCCTACGTGGCCACCGGGCAAC
CGCCCACACAGCGCTCCTCGAGTGCCAAGCCCGTGTCACCGCAATTGACA
CCCAGGAACGCTCGACGGCCGCTGCCCTCAGTGCTGAGAAGCGTCGCCAC
GCTTCCTTCCTCTCCGGGTTCTCTGACCCTACCCCGGCTTCGGCCACCAC
GGTGACATTCGTCCCTCCCCCCGTCCCACAGCCTACCGCTGTGGGCGCTT
CCACGGCTCCCACGGCCGCTGCTGCGGCACGTTCGTCTGCCTCCACAGTC
GACACTCTTCCGGCACAGCTCAGCATGCAACCACCAGCCCCTCGAAGGTC
ACACGACAGTTCGGCCCCCCCACTCTGGTCGGTCGTGGCACGCCGCCCAC
CCCAGCAGGACAACAAGCCTGCACCACGGACGGCTCGCTACCTCGAGTTG
CCCGTCTCCAAATTCATGTTTCGAAACTCGGCCTTCCCATCGGATCTTCG
AATTCCCATCAAGGACCACGCCACAGAGGTCCACGGGACTCTGTTCGACC
TGACCGGTAAACGTTACCGACTTGACCGTGCCCTTGCCCTTGCGACGAAG
ACCAAAACCCCCCTAAGCGAACAAGTCGTGAACGCGACGCTCCGCCTTCG
CGACCTCCTGGACGCGGCCTGTGGCACCCTTTCCGGCGAGCATTGGCTCC
TCGACGCCCTTCGGGAATTCGAGACGGCCCGCGCCAATCGGTCGGACTCT
TCTGCTAGCGACAGCTCAGCTCCCACCGGCCAACGCCGCCGCGAGGAACC
TTCCAGCGGCCGAGGGAATGCCAAACGGGCAACATTCTCGGGCTCGGACA
GCGACAGCTCAGCTCCCAGCGGCCAACACCCGGAGGACGGAACGCGATCG
ACGGCAAGTACCCCCCGTTATATTCCATGCTGCGGAATCTGATAGTGACA
CACCATCGTTCCCCCCGAAAATTTTTAGGCCACGTGTAACACAACGCCTG
CCTTCGCGCGCTCCTATATCCAGTACCGTACATGACTTATCCAGTACCGT
ACGTGGCTCTGCCGCAGCCCCTCGCGCGCTCCTATATCCAGTACCGTACA
TGACCTATCCAGTACCGTACATGGCTCTGACGCCGCCTCCGCCCCTCCCT
CAAACAAATGGTTGAGGCAGTCACGGCTGCAGCAATAGCCGCCGTTGACC
GCCACCTTGAACGCCTGGGCTTATGTATTGCTCCTACGGTACCGCACTCC
GATTCGGCAGCCGTACCGCATACTGTATCACCAGTTGAACGCACCACTGC
TGTCGCACCATACACGGCTCCTGTGACCCACCCCGCGATGACCCCGCCGG
GTACTGTACTCCCTTAAGTCGCGCCGCATACTTCGGTTGCACCGCGTACT
GTACCCCCTTTGGCACGCTCCGCCCCTGTAATACCGTACACGGGCCCGAA
CTCTGTGCCCCACCCCCCGTACACCGCGATGACCTCGCCGAATACTGTAC
ACCCCTTCACGAGCTATGGGTCGCTAGCGCAGCCCCCTCCGCCGGTAGGT
ACTGTATACCAACCCAATTACGCCGCCATGGCATCACATAATACTGTACC
CTCCCTCGCGCGCCCTGCGTCGGTAGCACCGCCCCCACCATCACTCGGTA
CTGTAAATCCATACATTTACACCACCGCGAACCCCGCGCCAGTGCCAACG
CTCCCACACCCACCGTGCCCCGCGGCCCCCGCCGAGCGTGACGCGACCCC
CAGACGAGCGCTTTTTAAACGACGATTGTTCGAGTTTAACTTCGAACTCA
TCGACCCCTTCTCGCCTCCGCGCGGATTTCGTCGCAAGCTTACAGGCCGC
CTACCGTACGTTAGATATGCGCCGCGTTCCACGCGTTCAGCCCCTCCAAT
TCCCCCCCTCCGCAGATCGAACCGCTGCCACCCAGTTACTGATTCGCTCC
ATGCGCGATGCACTTTCCGGAATCTTTGATGTCGCCGACCCCTCTGGAAC
GGTTACTCTGACCTCACCAGTTTGGGTCCATGGATGGCACGCCCCTCTCC
TGAAACTGACCAAAGCCGCTATAGCTCCTAACCGCGACGACACCCACGAC
TTGCACCGACTTGTTGACGACATGTTTTCGCAACTACAGGAAAAATTGAG
TTCCGGGATCGGGGGACCCGCGGCGTTCAAGACCCTCCTGACGGACTTCG
CCGACTATCTTGACCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig975:149796..153462-

>mRNA_A-nodosum_M_contig975.10.1 ID=mRNA_A-nodosum_M_contig975.10.1|Name=mRNA_A-nodosum_M_contig975.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1977bp|location=Sequence derived from alignment at A-nodosum_M_contig975:149796..153462- (Ascophyllum nodosum dioecious)
ATGTCTAGTGCTTCGCCTTCGCCCACATTGCCACCCGCGACCGACGTTCT
CCTTGCATCGCCGCTTAACGGCCCTCCTGTTTGTACGCCCTCGCTTCGCT
CAACTGTTATAGCCTCGCCTGCTCGATCTGTTTTGCCTGACCGATCGCTA
CGGCTCTCTTCTGAAACACCCACAGTACAAAGCTTGCAGCTAAACCCGAA
AATTGAAATTCGGCCTCAACTCTCCGGTAGCTTAGTTGCTCCCACCACCG
CGCCAATGACTTGCGCTTCTTCGTTAACAGAGAGAGCACTACGCTCTCAA
CGCCGCGACGCTTTACGTGCCTTACGTGACGCAGCTATCCCATTTCCCTC
GTCACCCATGCATCTTCATGAGGCTACACGCGATTTTGGCGCCCAAATTG
AATATTTAACGATGCAGCCCTCGACGCCACGACAGACGACCCCTATACAT
AACCACAGTAACTCTGTACATAACCACAGTAACTCTGTACCCGCCCGTCG
TGCGACCATGTATGTAGCTGACCATCCTCCTTTCACCGTTCGTGTGATCC
CCCCCCGTGTTTTCACGCCCCTTGCCTCCCTGCGAGCCTCCAGTAACACC
ATGCCTGCCACTACAACTTCAGCTGCCTCTTCCCCCCAGAAGACCACCGC
GGCTTCCCCGGCCCATACGGCTCCACTTCCCCAGTCGGCTTTTTCGCCTA
CGCCTTCACCGGACCTGTGGGCCAACACGGGCTCAAGGACTGGCCGCACT
CCTGGACTCCGCCCCACAGCTCCGGTACCACGGGCAGCTTTTACCGCCAA
CGGCGGCCCCCCACCCCACCTGGACCACTGGGCGCCCGTCTGGACCACTC
TCTCCGCGCAGCAGCGCGCAGACCTCACACGGCCCTCCCTCCACGAGGTG
GAAGAGGGTCTTGCCCGCACCCACGTCGCCGCCTCTGCGGCCTCCGACCC
CGATCGCCACGCGATCGACCTCGGCACCGCCGAGCACGACCGGGTAACGG
CCCCACTCCTTTCAAGACTCTCCGCCCTACGTGGCCACCGGGCAACCGCC
CACACAGCGCTCCTCGAGTGCCAAGCCCGTGTCACCGCAATTGACACCCA
GGAACGCTCGACGGCCGCTGCCCTCAGTGCTGAGAAGCGTCGCCACGCTT
CCTTCCTCTCCGGGTTCTCTGACCCTACCCCGGCTTCGGCCACCACGGTG
ACATTCGTCCCTCCCCCCGTCCCACAGCCTACCGCTGTGGGCGCTTCCAC
GGCTCCCACGGCCGCTGCTGCGGCACGTTCGTCTGCCTCCACAGTCGACA
CTCTTCCGGCACAGCTCAGCATGCAACCACCAGCCCCTCGAAGGTCACAC
GACAGTTCGGCCCCCCCACTCTGGTCGGTCGTGGCACGCCGCCCACCCCA
GCAGGACAACAAGCCTGCACCACGGACGGCTCGCTACCTCGAGTTGCCCG
TCTCCAAATTCATGTTTCGAAACTCGGCCTTCCCATCGGATCTTCGAATT
CCCATCAAGGACCACGCCACAGAGGTCCACGGGACTCTGTTCGACCTGAC
CGGTAAACGTTACCGACTTGACCGTGCCCTTGCCCTTGCGACGAAGACCA
AAACCCCCCTAAGCGAACAAGTCGTGAACGCGACGCTCCGCCTTCGCGAC
CTCCTGGACGCGGCCTGTGGCACCCTTTCCGGCGAGCATTGGCTCCTCGA
CGCCCTTCGGGAATTCGAGACGGCCCGCGCCAATCGGTCGGACTCTTCTG
CTAGCGACAGCTCAGCTCCCACCGGCCAACGCCGCCGCGAGGAACCTTCC
AGCGGCCGAGGGAATGCCAAACGGGCAACATTCTCGGGCTCGGACAGCGA
CAGCTCAGCTCCCAGCGGCCAACACCCGGAGGACGGAACGCGATCGACGG
AAAAATTGAGTTCCGGGATCGGGGGACCCGCGGCGTTCAAGACCCTCCTG
ACGGACTTCGCCGACTATCTTGACCGC
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