mRNA_A-nodosum_M_contig974.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig974.25.1
Unique NamemRNA_A-nodosum_M_contig974.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig974.25.1 vs. uniprot
Match: A0A6H5KG63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG63_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.670e-86
Identity = 146/266 (54.89%), Postives = 187/266 (70.30%), Query Frame = 3 
Query:  327 FVP----GGAGINP-AGSIACRSFTSQCGRFQAEPRLQKQATGPGTNTVMATSLAPS-KSKADKKAEHFKLWQQSKVVEFGSSQQVETPMPGASLASTKEYISDPSRIVHACWDHDSITPMGNGIFRMGLKGQRFLTISIDMSVDIKFWAGPNGSVQCKSVGYSLDDMGKILGQVLPEDFSFELEGELRVEETETKVRGLALKNALLSGDVGLTIGGKMPGLLAATPERLVRTACLGINNRMLGFVVRKFVDTVAGDYRQWARNLK 1106
            FVP    GG G+ P A S  CR            P  +++         MA+S+AP+ ++KA+K +E FKL +   +VEFGS Q+VE  + GA L S + YISDPSRIV+ACW+H  IT MG+G+FRM  +GQ FL+ISIDMSVDI+ W   +G++QCKSVGYS+DDM K+LGQ   + F  ELEGELRVEET TKVR L+LKN  L GDV +TIGGKMPGLL+ATPE LV++A LGINN++L +V   FV TVAGDYR+W+R+ +
Sbjct:   22 FVPSNTAGGMGLTPIAASAPCRPAAVSTTESAGHPDHRRRMA-----VTMASSVAPAPRTKAEKTSEQFKL-KDGGIVEFGSGQRVEATISGAPLESMQAYISDPSRIVYACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYREWSRDQR 281
[Close]
BLAST of mRNA_A-nodosum_M_contig974.25.1 vs. uniprot
Match: D7FNW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW2_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 2.300e-84
Identity = 134/218 (61.47%), Postives = 171/218 (78.44%), Query Frame = 3 
Query:  456 VMATSLAPS-KSKADKKAEHFKLWQQSKVVEFGSSQQVETPMPGASLASTKEYISDPSRIVHACWDHDSITPMGNGIFRMGLKGQRFLTISIDMSVDIKFWAGPNGSVQCKSVGYSLDDMGKILGQVLPEDFSFELEGELRVEETETKVRGLALKNALLSGDVGLTIGGKMPGLLAATPERLVRTACLGINNRMLGFVVRKFVDTVAGDYRQWARNLK 1106
             MA+S+AP+ ++KA+K +E FKL +   +VEFGS Q+VE  + GA L S  EYIS+PSRIV+ACW+H  I  MG+G+FRM  +GQ FL+ISIDMSVDI+ W   +G++QCKSVGYS+DDM K+LGQ   + F  ELEG+LRVEET TKVR L+LKN  LSGDV +TIGGKMPGLL+ATPE LV++A LGINN++L +V   FV TVAGDYR+W+R+ K
Sbjct:    4 TMASSVAPAPRTKAEKTSEQFKL-KDGGMVEFGSGQRVEASISGAPLESMLEYISEPSRIVYACWEHKDIMDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGKLRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQK 220
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig974.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG63_9PHAE1.670e-8654.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW2_ECTSI2.300e-8461.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig974contigA-nodosum_M_contig974:236393..241075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1173024.KI912148_gene2823
PFAMsDUF1997
Model size1169
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.91e-14
EggNOG OGs28NJH@1|root,2ZBKN@2|Bacteria,1G4ZU@1117|Cyanobacteria,1JHS6@1189|Stigonemataceae
DescriptionProtein of unknown function (DUF1997)
Cds size891
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870502.2584345-UTR-A-nodosum_M_contig974:236392..2366251680870502.2584345-UTR-A-nodosum_M_contig974:236392..236625Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig974 236393..236625 +
1680870502.3837903-UTR-A-nodosum_M_contig974:241030..2410751680870502.3837903-UTR-A-nodosum_M_contig974:241030..241075Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig974 241031..241075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870502.3503366-CDS-A-nodosum_M_contig974:236625..2369611680870502.3503366-CDS-A-nodosum_M_contig974:236625..236961Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig974 236626..236961 +
1680870502.361396-CDS-A-nodosum_M_contig974:240051..2404441680870502.361396-CDS-A-nodosum_M_contig974:240051..240444Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig974 240052..240444 +
1680870502.3722043-CDS-A-nodosum_M_contig974:240868..2410301680870502.3722043-CDS-A-nodosum_M_contig974:240868..241030Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig974 240869..241030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig974.25.1prot_A-nodosum_M_contig974.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig974 236626..241030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig974.25.1

>prot_A-nodosum_M_contig974.25.1 ID=prot_A-nodosum_M_contig974.25.1|Name=mRNA_A-nodosum_M_contig974.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=297bp
MMHSTTKGTRRRAAPVKVFAILIVFSHHAVGFVPGGAGINPAGSIACRSF
TSQCGRFQAEPRLQKQATGPGTNTVMATSLAPSKSKADKKAEHFKLWQQS
KVVEFGSSQQVETPMPGASLASTKEYISDPSRIVHACWDHDSITPMGNGI
FRMGLKGQRFLTISIDMSVDIKFWAGPNGSVQCKSVGYSLDDMGKILGQV
LPEDFSFELEGELRVEETETKVRGLALKNALLSGDVGLTIGGKMPGLLAA
TPERLVRTACLGINNRMLGFVVRKFVDTVAGDYRQWARNLKDKAAQ*
back to top

mRNA from alignment at A-nodosum_M_contig974:236393..241075+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig974.25.1 ID=mRNA_A-nodosum_M_contig974.25.1|Name=mRNA_A-nodosum_M_contig974.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4683bp|location=Sequence derived from alignment at A-nodosum_M_contig974:236393..241075+ (Ascophyllum nodosum dioecious)
CTTCTACTTGGCAGCTGTAATTTCTGTCCCAACTACTGGGTAGCATTCTG
TAGACGTATGAGGGAAGGAGGAAAAGCCTTAGCTGTTATATTATCCCCTG
TCTCTTGGCAGTGAACTCCAAGCAGTGTTCCTGTCGAGAAATCCATAGCC
GATAAGTTATTACGCGACATATCCACCTGCTTCGGTCATCGGACCAACTC
CGAGTTCGCGGCTTTCACAAAACAGAGATAATCATGATGCACTCAACTAC
CAAGGGAACGAGGCGACGAGCCGCGCCGGTGAAGGTCTTTGCGATATTGA
TCGTCTTCTCCCACCATGCCGTGGGATTTGTTCCGGGAGGTGCAGGAATC
AATCCCGCGGGGTCAATAGCTTGTCGATCTTTTACTAGCCAATGCGGTCG
GTTCCAGGCGGAGCCCAGACTCCAAAAGCAAGCAACTGGACCGGGAACCA
ATACCGTAATGGCGACCTCGCTCGCTCCGTCGAAATCCAAGGCGGACAAG
AAGGCTGAGCACTTCAAACTATGGCAACAGTCTAAGGTGGTGGAGTTTGG
GAGCAGCCAGCAAGTCGAGGTGAGAGAGGAAAAACATGTTTTTTTTTATT
AATAGGCACTTTGACGTGGAGGTATGGGATTATGTGATACCAATACTTCA
CTCAAAAAATATTTTTTCCTGTAGTCGTATGTACCTTGGGGCACAAAAAA
TACGGTTGTAGAGGCTTTCTACATGGTACATACTCATACAGCGCTAAATC
TTGCACTTTCCCTCCGAGATGACAAGGGAGAACTCGCCCCGCGCCCGTTC
CGACTGCTTCTAGCATCTTTTTGCCAAACATCCCTCGTTGTATTCGAAGG
TGATAAGCTTGTACATCGCCCCGTCTGCATGTCCCGCCATCACGGAGACC
GGGATGTTTTATATAGATAAACTACCAGATACTGTAACCTCAATGTACTC
TGTACTCGTTTTTGTTATCTTCGTCGGTGACGTGTGACTGACGTACACCC
TTCTGTACAACAGCAGTACGTATCACACAGCATAAATACGTGTACGTACG
TGTGCAAAGATATTAAATTAAATACTTGTGTACAGAGCACCCGCGAACTC
CGGCCCTCTCGTGGGTTCATTCTACGCTACTAAATATTAATAGTTCGGCG
CCCGATCGGGAGTGGAGTAGTCGATGAACCCGCCATTCACTACGAGGTAG
TGCGGATTTCTTGAGTTACACTCTTGACAAGATCATCTCTCTCATTCTGG
ATTCCGTAGCGCAAAGCGTGAGAATGAGAACGTGAGAAAGTAAAATGCAG
CCATTGGTTGACGAGGTGAGGTGTACGAGTGCTGAATTTCCATCGCGATA
AAAAAATTGCGAGCGAGAAGCGGGGAGAGATGGCGAGACCCTTAGTGACC
ATAGTAGGCATTACCAGGAGGGCAACGTTACAGTAGGTGGTGGGAAATGT
AACCTAGCATGTTGAGGCGCATCGGCCGAAAGTAAAAAACTCACGAGTAA
AAACAAACTGTACCAAGTGTACGAGTACGCCTCGTGCTTGTATCGGTCCT
CCCAGTAGGAGATGTGCAGAGCCTATGAACGGCTATTGAAGTGTCTTGTT
TGTCTACAGTATCTCTTTAAATTTCACAGTAACGAATTGAGCCCCGACCA
CCCTCTACTACACGTCATTTTTCATAAAAGGCTTAACATCTTGCAAAAAA
ATAGTAGGGCTTCTCATCCCGCCTACGGTCCTACAGGTGGAGGAGCTTCA
CATTTTCCCCCGGTTCAAGCCCTCGTTAACGAACAGTTGAATTCTGCTTT
CTCGTAACAATTTTGCAATTTTCTGAGAGTCGAAGTCACAGTCGTTCCGT
ACCCCGGATCTTCGCGTTTTAACTACTTGGCAACTCGGGAGACGAGGGAG
ATCATATCCATCCCTCGTCGTATGCCACCAGGAGTATGACACGCCCCGTT
CTGTAGCTTTGGTTGAGCGAAAATAGCGACAAGGAGACTGGAGCAAGCGT
AGAGATTTTGTTTTAGTTGTGATTTTTTTGGAAGGGTTGGGATGGATGTC
TTGTTGTGTTTTACTCTTGCGTGTAAAGTTGGATAAGAAATTACTCCTAT
GGAGCAGACATCTGGCTCTCAGGCATCCCAAAATGGCACGCGTTAACACG
TTATCGATGTAAGACTGCGAGATTCGTCCGCGCTGGATAACTAGACGCGC
AAGGGTTTAGCGTGACGGGTTTGGAGGCATTATTTTGTTTGAAGACCCTT
CCACTAAAAAGAGTATATGGTCACGTGTTGACTGATGCACGCCACCGCAA
CAAATACCCGAACATCGTATAGAGTTAAGACCTAATCGTTGATTTCCATA
TTACAAAGGTGACTCCTGTATATGAACACCTGTACCTCGCAGGTACACGT
AGCTTTGTTTTTTTAAACCCCTCAGGTTTCAAGCAGCCGAAACCCCGGTC
AGAAGTTTAAACTACTCTGCATCAAGAAGCCCGACATAATCGAAGCAATA
TGCCGTGACGTGTAGAGTAAGTCAAATGATGACCCCCATACACCTTCCCC
TTGTCTAAAGTGTCGTACCTGTGAGCGGGTTCAGGGTCAATGGTTCCAAC
GTCTTCCACGTAAAAGGTCTTGTCCGTGTCAATTTTTGGGATGGTGGGGA
GCCAGACTTCTTCGAGCTGTGCGACGATTAGACCCCCCTTGCTCTAATTG
TCGGTCCGCGGCCTGCTGTTCATGGCTTTGCAGCTCACCAGGGGTGCAAG
CGTGTGCCCCTAACTTGGTTGTACTTGTGTTTCCCTTTTTTCGAGTCGCT
AAATTCGCCGAAGAATGCAAGTATCGGTTTAAAGGGGGCATGTCCATATT
AATACTGTAGTATAAAAAGTGTCGCCCGTTGTAGTGAGACGGAGAATCTG
CTTAGGCTGGATCATCCACGAAACACGTCGGAGCCTGGGTTATCGGGTCG
ATGCCGAGATCCACTGCTTCGCCGCTTCGCCGCTACGCACTTTCCCCCCC
CCCACGTTCTTTTCCGACCCCCGTGTACAGTCCGACCACAACGCAAATCC
TTACCCAAACCCCAAACCCGAGCTGGTCCTGGCGAGGTAGTGGGTTGACT
TGTTTAAGTCCCGTTGGAATTTCTGCCCGGCGATCTTGCCGGACCATTCA
GTCCAGGAGGCTTTGGCTTGAACCGCAGATTCAAGCTGCTCGCTGCTAAA
TTTAGCCGTACGAGTCCATTACTTCTTCCTATCTAACCGATACTTTTGGA
GGCATGGTTCACCGTTGGGAGGTTTTCAATCGGGACGTCGTTGGAGCTCA
ATTCAAGACCCCAGGCACGTCCGAGGCACAACCCCTTTATTCGTCGCGGC
GATGGCGTTTGTACAGTCAGGGAAACAAGTAACTTCTTGCGCGAAAACTG
AAATATACCTCACGAAGTACCTTCCCAAAGCTTTTATTTCCTCAAATGAA
AAAAGGCTCTCATCAAGGGGCCTCGAGCTGTCTGACCCAAGCCACCTTTA
GAACGGGAAGAACCATCGTCATTCAAGGTGGTGAACTCCTCTGGGTCCAT
TGTAGCAGTATCGGCGGATGCGACCACAAGTACTTGCAAAGAGAAAAAAA
TTGCGAACGGCATGATAAAGAAAACCTCCCTGTGTTCACCCCGTCCGACT
TGTGTCCAGACCCCGATGCCTGGCGCGTCACTGGCCTCCACGAAGGAGTA
CATCTCCGATCCTTCCCGAATCGTCCACGCCTGCTGGGATCACGACAGCA
TCACCCCGATGGGGAACGGAATCTTCCGGATGGGCTTGAAGGGGCAGAGG
TTCTTGACCATCTCCATCGACATGTCGGTTGATATCAAGTTCTGGGCGGG
GCCGAACGGGAGCGTTCAGTGCAAGTCAGTCGGGTACTCCTTGGATGACA
TGGGTAAGATTTTGGGCCAAGTTTTGCCCGAGGATTTCTCTTTCGAGCTA
GAAGGCGAGCTGAGGGTGGAGGAGACGGAAACGAAGGTACGCGGGCTGGC
GCTCAAAAACGCGCTCTTGAGCGGCGATGTCGGTCTCACCATCGGTGGCA
AGGTAGGCAGTATTAGTATTAATATTGGTATTAGAGTGGTGCATGAGGGC
GGAAGGTGTGGGGGTTGGCGGAGGGAGGGGTTGATCACTGTGCGTCAAAA
CTGTTGGGGGTAGGTATTGAGCCTAGAACCGTGGTAATTCCTACGACCCC
CCTAGACGAAGTAAACCATTTAGAACTTTACTGGTAGTACTTTTATGCCG
CAAACAAGGCTTGGCCTCCTCTTGAGCTATGGTTTCGGCAGTCATTAAGG
CCACATCAAACGTGTCGTCCTGGTGCATCCATTCCAACAGCAAGGCCCAA
CAAAAAAATAAGAATACAATAATATGGACCCCGGTCCTACTCGTTTGTCC
TGGGTGGAGTGCATTGCACAAGTTTGTACATTTACCCGTCGTCTCGTCTG
CTGCCTCCTGTTTGCGTTTTCTCCAGATGCCGGGCCTCCTGGCCGCCACG
CCGGAACGATTAGTTAGGACGGCCTGTCTGGGCATCAACAATCGGATGCT
GGGTTTCGTAGTGCGCAAGTTCGTCGACACCGTCGCGGGAGACTACCGGC
AATGGGCTAGGAATCTCAAGGACAAGGCGGCACAGTGAAGATGGGGTTAA
TACTGTACCACAGTCTAGTTTTTTTACAAACTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig974:236393..241075+

>mRNA_A-nodosum_M_contig974.25.1 ID=mRNA_A-nodosum_M_contig974.25.1|Name=mRNA_A-nodosum_M_contig974.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=891bp|location=Sequence derived from alignment at A-nodosum_M_contig974:236393..241075+ (Ascophyllum nodosum dioecious)
ATGATGCACTCAACTACCAAGGGAACGAGGCGACGAGCCGCGCCGGTGAA
GGTCTTTGCGATATTGATCGTCTTCTCCCACCATGCCGTGGGATTTGTTC
CGGGAGGTGCAGGAATCAATCCCGCGGGGTCAATAGCTTGTCGATCTTTT
ACTAGCCAATGCGGTCGGTTCCAGGCGGAGCCCAGACTCCAAAAGCAAGC
AACTGGACCGGGAACCAATACCGTAATGGCGACCTCGCTCGCTCCGTCGA
AATCCAAGGCGGACAAGAAGGCTGAGCACTTCAAACTATGGCAACAGTCT
AAGGTGGTGGAGTTTGGGAGCAGCCAGCAAGTCGAGACCCCGATGCCTGG
CGCGTCACTGGCCTCCACGAAGGAGTACATCTCCGATCCTTCCCGAATCG
TCCACGCCTGCTGGGATCACGACAGCATCACCCCGATGGGGAACGGAATC
TTCCGGATGGGCTTGAAGGGGCAGAGGTTCTTGACCATCTCCATCGACAT
GTCGGTTGATATCAAGTTCTGGGCGGGGCCGAACGGGAGCGTTCAGTGCA
AGTCAGTCGGGTACTCCTTGGATGACATGGGTAAGATTTTGGGCCAAGTT
TTGCCCGAGGATTTCTCTTTCGAGCTAGAAGGCGAGCTGAGGGTGGAGGA
GACGGAAACGAAGGTACGCGGGCTGGCGCTCAAAAACGCGCTCTTGAGCG
GCGATGTCGGTCTCACCATCGGTGGCAAGATGCCGGGCCTCCTGGCCGCC
ACGCCGGAACGATTAGTTAGGACGGCCTGTCTGGGCATCAACAATCGGAT
GCTGGGTTTCGTAGTGCGCAAGTTCGTCGACACCGTCGCGGGAGACTACC
GGCAATGGGCTAGGAATCTCAAGGACAAGGCGGCACAGTGA
back to top