mRNA_A-nodosum_M_contig972.31.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig972.31.1
Unique NamemRNA_A-nodosum_M_contig972.31.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig972.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig972contigA-nodosum_M_contig972:212809..214749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870496.9922996-CDS-A-nodosum_M_contig972:212810..2129271680870496.9922996-CDS-A-nodosum_M_contig972:212810..212927Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 212811..212927 -
1680870497.004547-CDS-A-nodosum_M_contig972:214587..2147491680870497.004547-CDS-A-nodosum_M_contig972:214587..214749Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 214588..214749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig972.31.1prot_A-nodosum_M_contig972.31.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig972 212811..214749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig972.31.1

>prot_A-nodosum_M_contig972.31.1 ID=prot_A-nodosum_M_contig972.31.1|Name=mRNA_A-nodosum_M_contig972.31.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
TTHEGGAREPLRGPGMGWEHPERKRARVDTIDHQAGDFRALLDGNSAQAA
LPREMLLLCDKAREMLADTSARFGHFREVLVAMEGRADANGLG
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mRNA from alignment at A-nodosum_M_contig972:212809..214749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig972.31.1 ID=mRNA_A-nodosum_M_contig972.31.1|Name=mRNA_A-nodosum_M_contig972.31.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1941bp|location=Sequence derived from alignment at A-nodosum_M_contig972:212809..214749- (Ascophyllum nodosum dioecious)
ACAACTCACGAAGGAGGAGCGAGGGAACCGCTGCGGGGCCCAGGCATGGG
GTGGGAGCACCCAGAACGGAAGCGGGCGAGAGTGGACACGATAGACCACC
AGGCAGGGGACTTTCGCGCGTTGCTGGACGGGAACTCTGCGCAGGCCGCG
TTACCGCGTGAGGTAAGCACACGGGGCTCGCAATAGGTCATGCCGACGAT
CGCGACCGAGGCAAAGGTTCAGCCATTTTGAAAATTACTGCCCACTCTAT
GAACATAGTAAAAGGCGATAAGAAACTCAAGTTGCAGGTTGAAGTACGCC
TGCACTCGCGTATCAGAATTCATCATCGCGTATCAGAATTCATCGTCGCG
TATCAGTATTACAAAGCTACGTCTTCCCGCAAGCTGTCAGAAGGGAGCGA
GTACGTATCACAATGCACTGCGTATCATAAATTATTGCGAATTCATCGTC
GCGTATCAATATTGCAAAGCTACGTCTTTCCGCAAGCTCGAGGTTCAGAA
TGCAGCGATTACGTCACAATGCACTGCGTATCATAATTTATAGCGTTTTA
GAATGCAAAGCAATAATTCGAACCCATTGCGGGAGGAAACGTTACCTTAC
CCCATGATTTCATCGGCAGGATGTATAATTATCCCCAGGATAACCTAGGG
TTAGCGTGACTATTAAGGAGACACACCCCGATCGCCCACGGCAGACGTGC
GATGGTATTCAATTATGCCCTATGGCCGGCACGATACAGCTTCGTTACTG
CGTACGAGGAACACAGCATGCGATATAGATAAAAGCGTCGCTCGCCATGC
TTACATAAATGTTGCCCACGGCAGACGTGCGATGGTAATCAATTATGCCC
TATGGCCGGCACGATACAGCCTCGTTACTGCGTATGAGGAACACAGCATG
CGATATAGATGGAAGCGTCGCTCGCCATGCATACATAAATGTCGCCCAGG
GGGAGCCACCCTAGATCATACCTCCAAGTTTCTGGCCGTGACGAGTCAAT
TAAGCCCTAGGGCGAGCACGATAGGTTGCGCTGCTTCGTACGAGAACGCA
GCTCGCTATATAAATGTAAGATCTATACGCCATGCACAGCTTTCTGAAAC
GCCTGTCTGCGTGTCTCACGCATAACTCATGCGGTAATGAGCACGCGCAC
GGAGGGGTTCCAGCCGGAAACGCTATTATCGGTCCACCCTGGTAACCGGC
AGTCGAAATACAGCACGAGTAGCACCGCCCGCTCAACATTCGGTAGACGC
GCGTGCAGCGTACCGCCCGCTCAACATTCGGTAGACGCGCGTGCAGCAGC
GTAACCGCCCGGGGTTGCTTCCGGAGGAGGGTAATAAGGGTGCCCGGGAT
ACCGCGAGGAATGCCCGTAACAGTGTCCAGCATGCACGAGTGCAGCGGCG
CTCAGTACCGCCCGGAGGGAGGAAATCTCGGATACCTGCCACCCAGGGTA
ACGGGCGGTCGAAATTCAGCGCCATTAGCGCCCCCGCAGGACACTCGGTA
GACGCGCGCAGCACCGTAACCGCCCGGGGTTGCTTCCGGACAAAGTTGTG
AAAATAGAAGGTAGCCCCGCCACCAATAGGGTCGCGCTACGTCCGCCTAA
AACAGCTCGCCTGTGCAGCACCGCCGCTCGGGGCCGCCCGAAACCAATCA
ATAAGGATGCAAGCCGTTACGCGCGCCGACCGCACGAACGGAATATTATC
GATAAAGGGTCGCTGACCTGCGTAATGGTGCCCGCGCTCATACTCCCGCC
TTGTTTGCATGTCGCTGCCTGCTCGATGGGGGCCGCGGGGTGGGTAATTG
GGGGCGGGGACGCTCGGGATAGATGCTGTTGCTCTGCGACAAGGCGCGCG
AAATGTTGGCCGACACGAGTGCCCGGTTTGGTCATTTTCGCGAAGTGCTG
GTGGCCATGGAAGGCAGGGCGGACGCAAATGGGCTGGGGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig972:212809..214749-

>mRNA_A-nodosum_M_contig972.31.1 ID=mRNA_A-nodosum_M_contig972.31.1|Name=mRNA_A-nodosum_M_contig972.31.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig972:212809..214749- (Ascophyllum nodosum dioecious)
ACAACTCACGAAGGAGGAGCGAGGGAACCGCTGCGGGGCCCAGGCATGGG
GTGGGAGCACCCAGAACGGAAGCGGGCGAGAGTGGACACGATAGACCACC
AGGCAGGGGACTTTCGCGCGTTGCTGGACGGGAACTCTGCGCAGGCCGCG
TTACCGCGTGAGATGCTGTTGCTCTGCGACAAGGCGCGCGAAATGTTGGC
CGACACGAGTGCCCGGTTTGGTCATTTTCGCGAAGTGCTGGTGGCCATGG
AAGGCAGGGCGGACGCAAATGGGCTGGGG
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