mRNA_A-nodosum_M_contig972.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig972.2.1
Unique NamemRNA_A-nodosum_M_contig972.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5K4E2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.980e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  D+ +LRE H +   +W+ G VP
Sbjct:    1 MANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVP 45
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5JTI2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.310e-8
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  DR  LRE H +   +W+ G VP
Sbjct:   49 MANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 93
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5KAJ5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 7.330e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KA+GPD LPAEL+KL L  DR  LRE H +   +W+ G VP
Sbjct:   67 MANRKAIGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 111
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5KWL7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.190e-7
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  D+ +LRE H +   +W+ G +P
Sbjct:    1 MANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDIP 45
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.210e-7
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  DR +LRE H +   +W+ G VP
Sbjct:  379 MANRKAVGPDDLPAELIKLFLDGDRGLLREFHAIVVDVWQTGDVP 423
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5K8I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  D+ +LRE H +   +W+ G VP
Sbjct:  114 MANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVP 158
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5JTX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  D+ +LRE H +   +W+ G VP
Sbjct:   96 MANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVP 140
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5JY13_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY13_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.440e-7
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  DR  LRE H +   +W+ G VP
Sbjct:    1 MANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 45
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.600e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  D+ +LRE H +   +W+ G VP
Sbjct:   83 MANRKAVGPDDLPAELIKLFLDGDQGLLREFHSIVVDVWQTGDVP 127
[Close]
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.660e-7
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  151 MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVP 285
            MAN KAVGPD LPAEL+KL L  DR  LRE H +   +W+ G VP
Sbjct:   81 MANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVP 125
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig972.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4E2_9PHAE1.980e-857.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI2_9PHAE5.310e-860.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KAJ5_9PHAE7.330e-857.78Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KWL7_9PHAE1.190e-755.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE1.210e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I2_9PHAE1.340e-757.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX5_9PHAE1.340e-757.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JY13_9PHAE1.440e-760.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JQE0_9PHAE1.600e-757.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KE31_9PHAE1.660e-760.00Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig972contigA-nodosum_M_contig972:14209..14496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size288
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870497.0726485-CDS-A-nodosum_M_contig972:14208..143461680870497.0726485-CDS-A-nodosum_M_contig972:14208..14346Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig972 14209..14346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870497.0835233-UTR-A-nodosum_M_contig972:14346..144961680870497.0835233-UTR-A-nodosum_M_contig972:14346..14496Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig972 14347..14496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig972.2.1prot_A-nodosum_M_contig972.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig972 14209..14346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig972.2.1

>prot_A-nodosum_M_contig972.2.1 ID=prot_A-nodosum_M_contig972.2.1|Name=mRNA_A-nodosum_M_contig972.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=46bp
MANAKAVGPDGLPAELLKLRLQQDRTILRELHRLTTLIWRQGKVPR
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mRNA from alignment at A-nodosum_M_contig972:14209..14496-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig972.2.1 ID=mRNA_A-nodosum_M_contig972.2.1|Name=mRNA_A-nodosum_M_contig972.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig972:14209..14496- (Ascophyllum nodosum dioecious)
AGACAACAAGAATTATCCGCTGAAGATGGGAGCGATCGGGACACGCGAAC
CAGAGGAGCAGCTTTTGAGCTGGCCATGGATCATCTCGGTCCTTGATTCA
AAAGGGTACTGTTGTATCGTGACTGGAGTATAACGTTTTTTAGTACTTGA
ATGGCAAACGCGAAAGCGGTGGGACCAGATGGCCTTCCCGCAGAACTACT
GAAACTCCGACTTCAACAAGACCGGACCATCCTGCGGGAGCTTCATCGGC
TTACCACCCTCATCTGGCGCCAGGGAAAAGTCCCACGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig972:14209..14496-

>mRNA_A-nodosum_M_contig972.2.1 ID=mRNA_A-nodosum_M_contig972.2.1|Name=mRNA_A-nodosum_M_contig972.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=138bp|location=Sequence derived from alignment at A-nodosum_M_contig972:14209..14496- (Ascophyllum nodosum dioecious)
ATGGCAAACGCGAAAGCGGTGGGACCAGATGGCCTTCCCGCAGAACTACT
GAAACTCCGACTTCAACAAGACCGGACCATCCTGCGGGAGCTTCATCGGC
TTACCACCCTCATCTGGCGCCAGGGAAAAGTCCCACGG
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