mRNA_A-nodosum_M_contig971.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig971.3.1
Unique NamemRNA_A-nodosum_M_contig971.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig971.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig971contigA-nodosum_M_contig971:27008..27524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categorysignal peptide
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870495.2845473-UTR-A-nodosum_M_contig971:27007..271541680870495.2845473-UTR-A-nodosum_M_contig971:27007..27154Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig971 27008..27154 -
1680870495.3814242-UTR-A-nodosum_M_contig971:27481..275241680870495.3814242-UTR-A-nodosum_M_contig971:27481..27524Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig971 27482..27524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870495.298637-CDS-A-nodosum_M_contig971:27154..274811680870495.298637-CDS-A-nodosum_M_contig971:27154..27481Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig971 27155..27481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig971.3.1prot_A-nodosum_M_contig971.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig971 27155..27481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig971.3.1

>prot_A-nodosum_M_contig971.3.1 ID=prot_A-nodosum_M_contig971.3.1|Name=mRNA_A-nodosum_M_contig971.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MSVAKLATETGLLLCPLPCFLLSSSLETIGVDRNRVTSCDKFNLRCPKIS
RGIPDSCRSYGLFQSLRQVPCQPHLKAKLANKCSDFVEKCQSRKIRRAMG
REPRKRRA*
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mRNA from alignment at A-nodosum_M_contig971:27008..27524-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig971.3.1 ID=mRNA_A-nodosum_M_contig971.3.1|Name=mRNA_A-nodosum_M_contig971.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=517bp|location=Sequence derived from alignment at A-nodosum_M_contig971:27008..27524- (Ascophyllum nodosum dioecious)
TTGCCAACCCGAGTTGAGGATAAGCCGGTCGGATCGATCGGAGATGTCTG
TAGCAAAGCTGGCGACTGAAACTGGCCTGCTGTTGTGTCCACTTCCATGT
TTCCTCTTATCTTCGAGTTTGGAGACGATTGGTGTTGATAGAAACCGCGT
GACATCGTGCGATAAATTCAACCTTCGGTGTCCAAAAATCTCTCGTGGCA
TTCCTGATTCCTGTCGGAGCTATGGCCTGTTCCAGAGTCTACGACAGGTG
CCGTGTCAGCCGCACCTTAAGGCAAAGCTTGCAAATAAATGTTCCGACTT
TGTCGAAAAGTGTCAAAGTCGTAAGATCAGGCGAGCGATGGGGCGGGAAC
CTCGCAAACGGCGCGCTTGATTTGCCCGTCGAAATCGCTCTAGTTTGGTT
GGATGTGAGATATACTCACTTGTGACAAGGCTTTGCACTAAACAAGCAAA
CTTACCGTCATCGCACTATTAAACGTGTGGTCGTCACTTTCTCTTGTTTT
CGATTTTACGCTGGCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig971:27008..27524-

>mRNA_A-nodosum_M_contig971.3.1 ID=mRNA_A-nodosum_M_contig971.3.1|Name=mRNA_A-nodosum_M_contig971.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig971:27008..27524- (Ascophyllum nodosum dioecious)
ATGTCTGTAGCAAAGCTGGCGACTGAAACTGGCCTGCTGTTGTGTCCACT
TCCATGTTTCCTCTTATCTTCGAGTTTGGAGACGATTGGTGTTGATAGAA
ACCGCGTGACATCGTGCGATAAATTCAACCTTCGGTGTCCAAAAATCTCT
CGTGGCATTCCTGATTCCTGTCGGAGCTATGGCCTGTTCCAGAGTCTACG
ACAGGTGCCGTGTCAGCCGCACCTTAAGGCAAAGCTTGCAAATAAATGTT
CCGACTTTGTCGAAAAGTGTCAAAGTCGTAAGATCAGGCGAGCGATGGGG
CGGGAACCTCGCAAACGGCGCGCTTGA
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