mRNA_A-nodosum_M_contig970.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig970.4.1
Unique NamemRNA_A-nodosum_M_contig970.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig970.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig970contigA-nodosum_M_contig970:47344..49109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size526
Hectar predicted targeting categoryother localisation
Exons3
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870494.6175826-CDS-A-nodosum_M_contig970:47345..474231680870494.6175826-CDS-A-nodosum_M_contig970:47345..47423Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig970 47346..47423 -
1680870494.6340046-CDS-A-nodosum_M_contig970:48396..485971680870494.6340046-CDS-A-nodosum_M_contig970:48396..48597Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig970 48397..48597 -
1680870494.775119-CDS-A-nodosum_M_contig970:48866..491091680870494.775119-CDS-A-nodosum_M_contig970:48866..49109Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig970 48867..49109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig970.4.1prot_A-nodosum_M_contig970.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig970 47346..49109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig970.4.1

>prot_A-nodosum_M_contig970.4.1 ID=prot_A-nodosum_M_contig970.4.1|Name=mRNA_A-nodosum_M_contig970.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=174bp
DDVDTVELLENESIESAGVVVLHDKITPAKSATSLLRRLMEAKLLKTKTA
VLVLYSGRTLLTREQDPRESEMSGRVRQGLQEIAGEDGHVGVVRCHLELK
TQQDETAGGKLPLVQKQTSTKPVFIDFSAFSAKEVLQFDVFQGKNPPAWV
FHPEDVAGDMPDTFKLHTITGPRI
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mRNA from alignment at A-nodosum_M_contig970:47344..49109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig970.4.1 ID=mRNA_A-nodosum_M_contig970.4.1|Name=mRNA_A-nodosum_M_contig970.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1766bp|location=Sequence derived from alignment at A-nodosum_M_contig970:47344..49109- (Ascophyllum nodosum dioecious)
GACGACGTGGACACGGTAGAGCTTCTCGAGAATGAGTCTATCGAGTCAGC
AGGCGTCGTAGTCCTGCACGACAAAATAACGCCTGCTAAGAGCGCAACGT
CGTTGCTGCGACGACTGATGGAAGCGAAACTACTGAAGACCAAAACAGCT
GTGCTGGTTCTGTATAGTGGACGAACACTTCTGACTCGAGAACAAGACCC
AAGGGAGTCAGAGATGTCCGGCAGAGTACGACAGGGTTTACAGGTTATCG
TATGGGTGTTTGTTTCGAGTGTGTGCGGGGTGCAGAAGTATATTGGACTG
TCATTTTTGGTACATATAATATTATGGCCGTGTACAGCGTCGGTATGCAG
TAGCGTATACCGTAAATTACACCACTCCAGGGCTTATCATGACACTACCA
CTCCAGAACCACAAACTACGTGCGCCCTAGATCTACTTTGTTCAAGAATA
ACGTGAAGTGCTTCCTCATAATTAACACTAATATCAACTGGAATGTCGCG
CGGCGCGTATAGGAGATCGCTGGTGAAGACGGGCACGTCGGTGTTGTACG
TTGCCACCTCGAACTCAAGACCCAACAGGACGAAACCGCCGGGGGTAAAT
TACCCCTTGTTCAAAAACAGACTTCCACAAAGCCCGTCTTCATCGATTTC
TCGGCATTTTCGGCAAAGGAGGTCCTCCAGTTTGACGTCTTCCAGGGCAA
AAACCCACCTGCTGTAAGCAAAACATTGTTTGGTTACTATTTACGATGCT
AAACATAGGTTTTACCGGTAGCCCCGGTAGCTCAGAGGTACCCCGTAACA
CTCCGACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTATGCCC
GACGGGTGGAGAACGATTAAATCGTTAGTACACAAAATTCGACTCCACTG
TCGACGAGAAAAAGGTATGGCTGAATCCTTCTCGCGAGAAAATTAAGGCA
TGCACCGCAGAAAGAAGGTGGAGGAGAAATCCGCTTTGACCTTCTTCCTG
TGTGACCCCGGCTGGTGCGTCCAACGAACTTGATGTACAAAATGAATGGG
AAGAAAACACTCTCACACACACACACACACACACACACACACACACGGGA
GCACAAGGAACTCTGAGCTTAAGTAAGAATTGTACAAGTAGAGAGAGCGT
GTCCCCTTTGTCGCGTCTGATCAGAGGTTTTCGTAATAAGTATCATTGAT
CCCCCCTCGGGAGGATCAAGGCGAGTGGCATAGAATGACTAGGATGACAG
GGCCGGATTGCGTGGTTATGTGCAATTTAATAGATACACACACACACACA
CACACACACACACACACAGCCCCTTTGTCGCGTCTGATCAGAGGTTTTCG
TAATAAGTATCATTGACCCCCCCTCGGGAGGATCAATGCGAGTGGCATAG
AATGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAA
ATACACACACACACACACACACACACATAGATGTGGTAAATGATAATGGG
GGGGGGAGGGGGGATCGCGATGAAAGTAGATGTCTAAATTACATTCAGTG
GGGGCAACGTTCGGGGTAGGATTATTGGATGAAAAATGATATGCGACAAT
TCTGTCTCGTACTAGTAACTGCTGATATACTGCTACTATTACGATTAATA
TCGCGGTGATGAATGTCCTTTCGCGCGTCGGCACAGTGGGTATTTCACCC
TGAAGATGTAGCAGGGGACATGCCCGATACTTTCAAGCTCCACACGATCA
CGGGCCCGCGAATATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig970:47344..49109-

>mRNA_A-nodosum_M_contig970.4.1 ID=mRNA_A-nodosum_M_contig970.4.1|Name=mRNA_A-nodosum_M_contig970.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at A-nodosum_M_contig970:47344..49109- (Ascophyllum nodosum dioecious)
GACGACGTGGACACGGTAGAGCTTCTCGAGAATGAGTCTATCGAGTCAGC
AGGCGTCGTAGTCCTGCACGACAAAATAACGCCTGCTAAGAGCGCAACGT
CGTTGCTGCGACGACTGATGGAAGCGAAACTACTGAAGACCAAAACAGCT
GTGCTGGTTCTGTATAGTGGACGAACACTTCTGACTCGAGAACAAGACCC
AAGGGAGTCAGAGATGTCCGGCAGAGTACGACAGGGTTTACAGGAGATCG
CTGGTGAAGACGGGCACGTCGGTGTTGTACGTTGCCACCTCGAACTCAAG
ACCCAACAGGACGAAACCGCCGGGGGTAAATTACCCCTTGTTCAAAAACA
GACTTCCACAAAGCCCGTCTTCATCGATTTCTCGGCATTTTCGGCAAAGG
AGGTCCTCCAGTTTGACGTCTTCCAGGGCAAAAACCCACCTGCTTGGGTA
TTTCACCCTGAAGATGTAGCAGGGGACATGCCCGATACTTTCAAGCTCCA
CACGATCACGGGCCCGCGAATA
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