mRNA_A-nodosum_M_contig970.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig970.3.1
Unique NamemRNA_A-nodosum_M_contig970.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 90.9 bits (224), Expect = 2.440e-21
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRK-RPDHRMTSYNRALEITGCESIETTLRTRRL 206
            IE L+YGC TWTL  +H+AKLR+ HH VLLR+IG QR+ R DH   SY +AL IT CESIETT+R RRL
Sbjct:    7 IETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRL 75
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BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.600e-18
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  112 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 179
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.880e-18
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  163 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 230
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.870e-18
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  131 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 198
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.070e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW  RQ+ Y  LRT+HHR+LLR+IG QR++  +R  SY + L+  GC+S+ETT+R RRL
Sbjct:  321 MEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRL 388
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.350e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  414 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 481
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.360e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  526 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 593
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.360e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  582 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 649
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  855 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 922
[Close]
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-17
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3 
Query:    3 IEALMYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEITGCESIETTLRTRRL 206
            +EAL+YGC TW+ R+ HY  L+T HHR+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRL
Sbjct:  911 VEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRL 978
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig970.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001AA1A1FE2.440e-2165.22hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JLH5_9PHAE2.600e-1855.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE4.880e-1855.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE6.870e-1855.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JS19_9PHAE1.070e-1755.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.350e-1755.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE1.360e-1755.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE1.360e-1755.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KX41_9PHAE1.370e-1755.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE1.370e-1755.88Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig970contigA-nodosum_M_contig970:42543..42748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size208
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870494.8934293-UTR-A-nodosum_M_contig970:42542..425561680870494.8934293-UTR-A-nodosum_M_contig970:42542..42556Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig970 42543..42556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870494.9047947-CDS-A-nodosum_M_contig970:42556..427481680870494.9047947-CDS-A-nodosum_M_contig970:42556..42748Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig970 42557..42748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig970.3.1prot_A-nodosum_M_contig970.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig970 42557..42748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig970.3.1

>prot_A-nodosum_M_contig970.3.1 ID=prot_A-nodosum_M_contig970.3.1|Name=mRNA_A-nodosum_M_contig970.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
MYGCSTWTLRQEHYAKLRTVHHRVLLRIIGAQRKRPDHRMTSYNRALEIT
GCESIETTLRTRRL
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mRNA from alignment at A-nodosum_M_contig970:42543..42748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig970.3.1 ID=mRNA_A-nodosum_M_contig970.3.1|Name=mRNA_A-nodosum_M_contig970.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=206bp|location=Sequence derived from alignment at A-nodosum_M_contig970:42543..42748+ (Ascophyllum nodosum dioecious)
CAATCGAAGCCCTCATGTATGGATGCAGTACGTGGACCCTCCGCCAGGAA
CACTACGCCAAACTTCGTACCGTACACCACCGGGTCTTGCTTCGCATCAT
CGGAGCGCAGCGCAAGAGACCAGACCACCGGATGACCTCGTACAACCGTG
CCCTTGAGATTACCGGGTGCGAGAGCATCGAGACAACGTTGCGCACGAGA
AGACTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig970:42543..42748+

>mRNA_A-nodosum_M_contig970.3.1 ID=mRNA_A-nodosum_M_contig970.3.1|Name=mRNA_A-nodosum_M_contig970.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig970:42543..42748+ (Ascophyllum nodosum dioecious)
ATGTATGGATGCAGTACGTGGACCCTCCGCCAGGAACACTACGCCAAACT
TCGTACCGTACACCACCGGGTCTTGCTTCGCATCATCGGAGCGCAGCGCA
AGAGACCAGACCACCGGATGACCTCGTACAACCGTGCCCTTGAGATTACC
GGGTGCGAGAGCATCGAGACAACGTTGCGCACGAGAAGACTT
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