mRNA_A-nodosum_M_contig97.63.2 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: D7G5S2_ECTSI (Transmembrane protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S2_ECTSI) HSP 1 Score: 280 bits (715), Expect = 4.140e-86 Identity = 141/224 (62.95%), Postives = 166/224 (74.11%), Query Frame = 2
Query: 518 GFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVGWWVESIDARG---------GMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGFVSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDN--RDSLWGKVSDAPTDGRITSS 1156
GFHFFWACC N+ A +RL++ APRPFM+D RLRPLTDRYETSHG PSLETHMATVV GWW ES + G G+Q + RLLA+ YI FVGFTRVYACSRFVHQV LS++TGAVGL +GWRLS HL+ L RHHVRGT+VV+IIALG V+Y VENN S+LMGI+K EY+RVL+NI+ ES Q Q+AT G +E ++ W AP DGR SS
Sbjct: 19 GFHFFWACCINMAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTDSGGDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSIVTGAVGLAWGWRLSTHLDGLALTMRHHVRGTVVVVIIALGMVAYQVENNDSQLMGIRKHEYLRVLSNIVKESQQAQSATVGGAESEDGAEGGEWLLHDGAPWDGRAVSS 242
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: A0A7S3XSM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM3_HETAK) HSP 1 Score: 156 bits (395), Expect = 7.500e-40 Identity = 92/213 (43.19%), Postives = 120/213 (56.34%), Query Frame = 2
Query: 419 WMQRNLARVVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPL--TDRYETSHGFPSLETHMATVVVGWWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGFVSYHVENNTSELMGIKKQEYVRVLANIINES 1051
W Q + +VVS P DIS++TWF+F + +FGF F W C NL A +R +G RPF FD RLR TD+Y S+GFPSLETHMA VV G I G + L I I FVGFTRVYAC+RF+HQV LS TGA+GL + L ++ + +R H + L + L V E+N +G+ ++EY RVL I+ S
Sbjct: 41 WFQPYIDKVVSSNPFADISMLTWFSFIIAVTEFGFPFLWICTGNLFFAQVLRWTLGCRRPFEFDGRLRKAVKTDKYIWSYGFPSLETHMAVVVYG----GIAFYSGKWQLLWLFTPI-IAFVGFTRVYACARFIHQVALSGGTGALGLALAFWAVRSLRAWGVRYRCHYYWAFLALTVVLVVVGLWAESNECSWLGVPREEYRRVLRGILETS 248
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: F0Y7I7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7I7_AURAN) HSP 1 Score: 106 bits (265), Expect = 9.080e-22 Identity = 83/263 (31.56%), Postives = 119/263 (45.25%), Query Frame = 2
Query: 434 LARVVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVGWWVES--IDARGGMQSIARLL----AVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFG----------WRLSVHLNSFDLLFRHHVRGTIVVLIIALGFVSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDNRDSLWGKVSDAPTDGRITSSGRSRQR 1174
L V+S+ P RD++ +TW AF G G+HF C NL R ++ A RP +D L+ L DR ++G P L THMA VV E DARG I L A+ + V +R+ A SRFV+QV LS+ TGA+G+ WR H + + HV ++ +V+++ E+N+S I E+ RV+ I N+ G + R+ R + AP D S R QR
Sbjct: 45 LRHVISQNPTRDVTALTWVAFVAGIFYSGYHFTVNCAMNLGFVLLTRAVIAARRPVEYDVHLKQLADRTRGAYGSPDLATHMAVVVFLQLSEKGVDDARGTDYEIFEGLIWGGALALVALVALSRLVAGSRFVYQVALSLATGALGITAARTHVTSKIDPWRDEWHNLANN---AGHVVWLTIIWSCVAAYVAHYAEDNSSHFFSIPNDEFTRVMKGIYNQPGSRG---YAPKRRNKRGQQY-----APPDALSNLSARLSQR 296
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: A0A485LLT1_9STRA (Aste57867_22364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLT1_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.600e-20 Identity = 66/212 (31.13%), Postives = 111/212 (52.36%), Query Frame = 2
Query: 416 PWMQRNLARVVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVG--WWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGFVSYHVENNTSELMGIKKQEYVRVLANIIN 1045
P + + + VVSR +DIS++ W F GF + W C NLL+A ++ + A RP +D L + GFPS+++HMA VVV ++++S+ + + LLA + + + F+RV+ +RF Q++ S TG +GL G V + + + +H + V++ L ++ +VE N S G+ K E+ RVL +IIN
Sbjct: 48 PGVTQAIHSVVSRYRTQDISLLLWLIFFFLVPDLGFPYVWTCVGNLLVALVLQYAIDAKRPIDYDPDLHVYMCTDPDTRGFPSVDSHMAIVVVAPAFFLDSVS----LLTCLMLLACVGL--IAFSRVFVAARFPSQIVASWATGVLGLCVGDFCHVTMQLYRIPAYYHRVALVCVIVGTLFCIAQYVERNESRSFGLPKAEFTRVLESIIN 253
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: A0A7S3GX49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GX49_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.090e-19 Identity = 63/177 (35.59%), Postives = 98/177 (55.37%), Query Frame = 2
Query: 572 RLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVGWWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGFV---SYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERD 1093
R L+ A RP +D RL+PLTD S+GFPSLE++M+ V++G S + L I + +GF+RVY+ SRF HQ++ S + G VGL +N + HH G + V++I LG + + ++ENN S L I ++E++RV++NII+ ++T S D
Sbjct: 3 RCLIEAKRPVEYDIRLQPLTDTRADSYGFPSLESYMSVVIMGHLFLSFKNIWLLP-----LGAIVVFVIGFSRVYSRSRFPHQIVGSWLAGFVGLLVSMHCCERMNIHKM--SHHQHG-VCVMVIVLGVLCNFALNLENNESRLAQIPREEFIRVMSNIISGGDNNISSTVDVSTTD 171
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: A0A067CHI3_SAPPC (acidPPc domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHI3_SAPPC) HSP 1 Score: 92.8 bits (229), Expect = 3.270e-17 Identity = 80/266 (30.08%), Postives = 127/266 (47.74%), Query Frame = 2
Query: 443 VVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVG--WWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGF-VSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDNRDSLWGKVSDAPTDGRITSSGRSRQRLLEEHRDSFYFLHKTIERR 1231
+ SR +DISVV WF F + GF + W N L ++ ++ A RP +DSRL + GFPSL++HMA V+VG ++V S+ + + + +G+TRV+ RF QV+ S TG VG+ G L +++L ++ R +++L+ + F ++ VE ++G+ + E+ RVL+ I++ G GA E D PT TS+ R DSFYFL K++ R
Sbjct: 37 LASRYRTQDISVVLWFIFVFMTPELGFRYVWNVVGNFLAVVALQYVLQAKRPIDYDSRLYLPECTDPDTMGFPSLDSHMAVVIVGPTYFVSSVSP------VTCAIFTACVVLIGWTRVWIGMRFPSQVVASWATGIVGVIIGNLCHYTLVAYELP-AYYNRVCLLLLVASAAFCLATWVERAECRVVGVPRAEFTRVLSRILHGDGSN-----GAPETD---------PSPPT----TSTKR----------DSFYFLMKSMHAR 267
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: A0A1V9ZKU1_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKU1_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.460e-16 Identity = 75/264 (28.41%), Postives = 120/264 (45.45%), Query Frame = 2
Query: 443 VVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVGWWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGFVSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDNRDSLWGKVSDAPTDGRITSSGRSRQRLLEEH-RDSFYFLHKTIERR 1231
+ SR D+SVV WF F + GF + W+C N ++ ++ ++ A RP +D+RL + GFPSL++HMA V+VG + + ++ I VG +RV RF QV+ S +TGA+G+ + F L + ++V++ AL V+ VE + ++G+ K E+ RVL +I++ G +DG S+G + H RDSFYFL K + R
Sbjct: 474 LASRYRTHDVSVVLWFIFLFMTPELGFPYVWSCVGNFVVVLVMQNVIQARRPIDYDARLYLPACTDPDTMGFPSLDSHMAIVIVG----PALVLPSISGVTSMVFAAVILLVGASRVVVGMRFPSQVVASWVTGAIGVGVASFCHAAVRPFQLPAFVNRVVLLLVIVSALFCVAAWVERSECRVVGVPKAEFTRVLGSILHGDG--------------------------SDG---STGAPKPTSASAHKRDSFYFLMKALRSR 704
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: T0RZG9_SAPDV (acidPPc domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RZG9_SAPDV) HSP 1 Score: 89.4 bits (220), Expect = 5.290e-16 Identity = 73/266 (27.44%), Postives = 127/266 (47.74%), Query Frame = 2
Query: 443 VVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRLRPLTDRYETSHGFPSLETHMATVVVG--WWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGTIVVLIIALGF-VSYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDNRDSLWGKVSDAPTDGRITSSGRSRQRLLEEHRDSFYFLHKTIERR 1231
+ SR +DIS+V WF F + GF + W NL ++ +V A RP +D+RL + GFPSL++HMA V+VG ++V S+ + + + +G+TRV+ RF QV+ S TG VG+ G L ++++ ++ R +++LI + F ++ VE ++G+ + E+ RVL+ I++ G AP + + ++++R DSFYFL K+++ R
Sbjct: 38 LTSRYRTQDISLVLWFIFVAMTPELGFRYVWNVVGNLFAVFALQYVVQAKRPIDYDARLHLPECTDPDTMGFPSLDSHMAIVIVGPTYFVPSVSP------VTSAIFTACVLLIGWTRVWIGMRFPSQVVASWFTGIVGVIVGNLCHYTLLAYEVP-AYYNRVCLLLLIASAAFCLATWVERAECRVVGVPRAEFTRVLSRILHGDGSDG---------------------APVTDQTLLTPQTKKR------DSFYFLMKSMQAR 269
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: W4GKK8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKK8_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 4.750e-12 Identity = 87/293 (29.69%), Postives = 128/293 (43.69%), Query Frame = 2
Query: 443 VVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIRLLVGAPRPFMFDSRL--RPLTDRYETSHGFPSLETHMATVVVGWWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGLFFGWRLSVHLNSFDLLFRHHVRGT-------IVVLIIALGFV---SYHVENNTSELMGIKKQEYVRVLANIINESGQTQNATFGASERDNRDSLWGKVSDAPTDGRITSSGRSRQRLLEEHRDSFYFLHKTIERRAAEKAAVQRNNSFRGSQF 1285
+VSR +DIS++ W F G +F+ C NL++A ++ + A RP +D L TD T GFPS+++HMA VV+ ++ + L+AV + FTRV+ RF Q++ S TG VGL V N + HH IVV+ +G V + VE + S GI + E+ RVL I+ SG T + AS +S+A + RSR DSFY+L +++ R + AV R QF
Sbjct: 50 LVSRYRTQDISILLWLFFFYLVTDLGIPYFYTCVGNLVVAAALQHSINAKRPIDYDDSLYIHACTDPDTT--GFPSIDSHMAIVVI---TPALTSNSVSALTFSLMAVSGFA-IAFTRVFVGVRFPSQIVGSWGTGLVGL-------VVANFIHVSVLHHAAAAVPPSFHRIVVVCFVVGAVCCVASWVEASDSRNFGIPRHEFTRVLKAIVG-SG-TDDVAVAAS-----------LSEA-----VDQESRSR--------DSFYYLMQSVHSRRRNETAVAPPPQSRMVQF 303
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Match: A0A6A4Z2K5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2K5_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.130e-8 Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 2
Query: 443 VVSRQPLRDISVVTWFAFSMGCHQFGFH--------FFWACCANLLLAGFIRLLVGAPRPFMFDSRL--RPLTDRYETSHGFPSLETHMATVVVGWWVESIDARGGMQSIARLLAVIYICFVGFTRVYACSRFVHQVLLSVITGAVGL 856
+VSR +DIS++ W+ C F F+ +F+ C NL++A ++ + A RP +D L TD T GFPS+++HMA VV+ + S RL+AV + FTRV+ RF Q++ S TG VGL
Sbjct: 55 LVSRYRTQDISILLWYMIDP-CWLFFFYLVTDLGIPYFYTCVGNLVVAAALQHSINAKRPIDYDDSLYIHACTDPDTT--GFPSIDSHMAIVVITPALTSNSVSALTDETTRLMAVSGFA-IAFTRVFVGVRFPSQIVGSWGTGLVGL 198 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.63.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig97.63.2 >prot_A-nodosum_M_contig97.63.2 ID=prot_A-nodosum_M_contig97.63.2|Name=mRNA_A-nodosum_M_contig97.63.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=330bp MQRNLARVVSRQPLRDISVVTWFAFSMGCHQFGFHFFWACCANLLLAGFIback to top mRNA from alignment at A-nodosum_M_contig97:824616..828110+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig97.63.2 ID=mRNA_A-nodosum_M_contig97.63.2|Name=mRNA_A-nodosum_M_contig97.63.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3495bp|location=Sequence derived from alignment at A-nodosum_M_contig97:824616..828110+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig97:824616..828110+ >mRNA_A-nodosum_M_contig97.63.2 ID=mRNA_A-nodosum_M_contig97.63.2|Name=mRNA_A-nodosum_M_contig97.63.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at A-nodosum_M_contig97:824616..828110+ (Ascophyllum nodosum dioecious)back to top |