mRNA_A-nodosum_M_contig97.53.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig97.53.1
Unique NamemRNA_A-nodosum_M_contig97.53.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig97.53.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.200e-21
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    7 SPFPSMAHVTNARAKESLAAWRNLPILKCWILIGERPTVANLKMMEMQSLLREKVRVTTGVLEQLN 204
            +P  SM HV NARAKESLAAW NL I+K W+L+GERPTVANLK+++MQSL+++ VRVT GVLEQLN
Sbjct:   76 APPMSMVHVQNARAKESLAAWHNLSIMKVWMLMGERPTVANLKLIDMQSLMQDAVRVTAGVLEQLN 141
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig97.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE1.200e-2171.21Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig97contigA-nodosum_M_contig97:756174..756377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870493.4078534-CDS-A-nodosum_M_contig97:756173..7563561680870493.4078534-CDS-A-nodosum_M_contig97:756173..756356Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig97 756174..756356 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870493.420208-UTR-A-nodosum_M_contig97:756356..7563771680870493.420208-UTR-A-nodosum_M_contig97:756356..756377Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig97 756357..756377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig97.53.1prot_A-nodosum_M_contig97.53.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig97 756174..756356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig97.53.1

>prot_A-nodosum_M_contig97.53.1 ID=prot_A-nodosum_M_contig97.53.1|Name=mRNA_A-nodosum_M_contig97.53.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=61bp
MAHVTNARAKESLAAWRNLPILKCWILIGERPTVANLKMMEMQSLLREKV
RVTTGVLEQLN
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mRNA from alignment at A-nodosum_M_contig97:756174..756377-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig97.53.1 ID=mRNA_A-nodosum_M_contig97.53.1|Name=mRNA_A-nodosum_M_contig97.53.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at A-nodosum_M_contig97:756174..756377- (Ascophyllum nodosum dioecious)
GCTCCGTCGCCTTTCCCGTCCATGGCCCACGTCACCAACGCCCGTGCGAA
GGAGTCTCTCGCAGCTTGGCGCAACCTCCCGATCCTCAAATGTTGGATCC
TGATCGGGGAGCGACCCACCGTCGCCAACCTTAAGATGATGGAGATGCAG
TCCCTGCTACGGGAAAAAGTACGGGTGACGACCGGGGTCCTCGAGCAGCT
CAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig97:756174..756377-

>mRNA_A-nodosum_M_contig97.53.1 ID=mRNA_A-nodosum_M_contig97.53.1|Name=mRNA_A-nodosum_M_contig97.53.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=183bp|location=Sequence derived from alignment at A-nodosum_M_contig97:756174..756377- (Ascophyllum nodosum dioecious)
ATGGCCCACGTCACCAACGCCCGTGCGAAGGAGTCTCTCGCAGCTTGGCG
CAACCTCCCGATCCTCAAATGTTGGATCCTGATCGGGGAGCGACCCACCG
TCGCCAACCTTAAGATGATGGAGATGCAGTCCCTGCTACGGGAAAAAGTA
CGGGTGACGACCGGGGTCCTCGAGCAGCTCAAC
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