mRNA_A-nodosum_M_contig9691.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9691.2.1
Unique NamemRNA_A-nodosum_M_contig9691.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: D8LQF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF6_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.070e-36
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 1
Query:    1 VRMNLSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            V+ NLSNA+LASK+EATTD+E+EVEMLLTAGGASEAGLAE EMEEL++KAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK
Sbjct:  381 VKTNLSNAALASKMEATTDMEKEVEMLLTAGGASEAGLAENEMEELKSKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 466          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A7S3H1C8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1C8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.830e-14
Identity = 37/79 (46.84%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   25 SLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSKA 261
            S+ ++ E TTD+E+E++M+L   GA++   A++E++ELQ +  +++E++E+QAEL+K++ALMFY++ K+H +NKIKSKA
Sbjct:  204 SMLNRFEPTTDMEKEIQMVLVKHGANDQDAAQREVDELQGRNMSLQEIREKQAELAKVKALMFYEQMKRHRLNKIKSKA 282          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A8K1FHZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHZ2_PYTOL)

HSP 1 Score: 73.6 bits (179), Expect = 2.510e-13
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 NLSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            NL+ A LASK  A T LE++VE LL   G S+  +A++E +EL  K  + EEV +RQ ELSKMRALMFY+E+K   + KIKSK
Sbjct:  286 NLTAAGLASKFSAETSLEKDVEALLKTSGLSDRTIAKEEHDELMQKKVSTEEVMQRQKELSKMRALMFYEEQKAKRVKKIKSK 368          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A2D4CIU8_PYTIN (U3 small nucleolar RNA-associated protein, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIU8_PYTIN)

HSP 1 Score: 71.2 bits (173), Expect = 1.620e-12
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   10 NLSNASLASKLEATTDLEREVEMLLTAGG-ASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            NL++ASLASK  A T +E+ VE LL AGG   +  +A++E +EL  K  + EEV +RQ EL+KMRALMFY+E+K   + KIKSK
Sbjct:  175 NLTSASLASKFSAETSMEKSVEALLKAGGLGDDRAVAKEEHDELVQKKVSTEEVMQRQKELAKMRALMFYEEQKAKRVKKIKSK 258          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A835Z4Q6_9STRA (Small-subunit processome (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.630e-11
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   13 LSNASLA-SKLEATTDLEREVEMLLTAGGASEA-GLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            LSNA LA SK +    +E E+  +LT  G+++   +AE E + L AK +T EEV  RQAEL +MRAL+FY ERK+H +NKIKSK
Sbjct:   37 LSNADLAISKFKPQDGMEAEIAAMLTGSGSADTKAMAEAEEKSLAAKHFTPEEVASRQAELQRMRALLFYHERKRHQINKIKSK 120          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A1Y1YL80_9FUNG (Small-subunit processome n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YL80_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 6.880e-11
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 NLSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSKA 261
            N++NASLASK EA+ +LE++V+ +L   G  E+ L  KE EEL+    +VEEV+ R+ EL  MR LMF +ERK   ++KIKSKA
Sbjct:  337 NITNASLASKFEASNELEKQVQTVLEESGIKESNL--KEYEELELNKLSVEEVQARRRELRLMRELMFREERKAKRVSKIKSKA 418          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: UPI0007115F7E (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007115F7E)

HSP 1 Score: 64.7 bits (156), Expect = 3.240e-10
Identity = 35/81 (43.21%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 LSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKS 255
            +++ SLA+K E TT++E+E++++L      E G+ +KE  +L     +V+EV+ R  EL+KM++LMFYQE+K   +NKIKS
Sbjct:   95 VTSNSLAAKFEPTTEMEKEIDVILEKSDMKEKGIRDKESRDLAVNKLSVDEVRARNQELAKMKSLMFYQEQKNKRINKIKS 175          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A7S1YUJ8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUJ8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.280e-10
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   16 SNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEME--------ELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            S   L  K   TTD E+E+ M L   G  E  +AEKE E        +L     T+EE K R  EL+K RAL+FY+E+K+HHMNKIKSK
Sbjct:  266 SKEELVGKFVPTTDFEKEIAMALEKAGGDEETMAEKEREALLGIDGDDLGENKITMEEYKRRVGELAKTRALLFYEEQKRHHMNKIKSK 354          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: A0A3R7ALA4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ALA4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.450e-9
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   10 NLSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            NL+ ASL SK      LE +V  LL A G S+  + ++E  EL A   +V+EV+ RQ EL+KMRA+MFYQE+K   + KIKSK
Sbjct:  292 NLTVASLTSKFVPEKPLENDVAALLEASGWSDKTMLKEEAAELAANEVSVDEVRARQGELAKMRAMMFYQEQKNKRIKKIKSK 374          
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Match: W4HDF6_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HDF6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-9
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   10 NLSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYTVEEVKERQAELSKMRALMFYQERKQHHMNKIKSK 258
            NL+ ASL SK      LE +V  LL A G S+  + ++E  EL A   +V+EV+ RQ EL+KMRA+MFYQE+K   + KIKSK
Sbjct:  292 NLTVASLTSKFVPEKPLENDVAALLEASGWSDKTMLKEEAAELAANEVSVDEVRARQGELAKMRAMMFYQEQKNKRIKKIKSK 374          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9691.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF6_ECTSI1.070e-3689.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3H1C8_9STRA2.830e-1446.84Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1FHZ2_PYTOL2.510e-1354.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CIU8_PYTIN1.620e-1253.57U3 small nucleolar RNA-associated protein, putativ... [more]
A0A835Z4Q6_9STRA3.630e-1152.38Small-subunit processome (Fragment) n=1 Tax=Tribon... [more]
A0A1Y1YL80_9FUNG6.880e-1151.19Small-subunit processome n=1 Tax=Basidiobolus meri... [more]
UPI0007115F7E3.240e-1043.21hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A7S1YUJ8_9STRA3.280e-1047.19Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A3R7ALA4_9STRA1.450e-949.40Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4HDF6_9STRA1.560e-949.40Uncharacterized protein n=11 Tax=Aphanomyces astac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9691contigA-nodosum_M_contig9691:17228..18389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQF6
Preferred nameUTP14A
PFAMsUtp14
Model size263
Max annot lvl2759|Eukaryota
KEGG koko:K02350,ko:K14567
KEGG Pathwayko01100,ko01524,ko03008,ko03460,map01100,map01524,map03008,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016319,GO:0019953,GO:0022414,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051704,GO:0060322,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
Exons2
Evalue1.04e-36
EggNOG OGsCOG5644@1|root,KOG2172@2759|Eukaryota
EC2.7.7.7
Descriptionmaturation of SSU-rRNA
Cds size255
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.0108829-CDS-A-nodosum_M_contig9691:17227..173411680870489.0108829-CDS-A-nodosum_M_contig9691:17227..17341Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9691 17228..17341 -
1680870489.0265357-CDS-A-nodosum_M_contig9691:18242..183831680870489.0265357-CDS-A-nodosum_M_contig9691:18242..18383Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9691 18243..18383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870489.0368848-UTR-A-nodosum_M_contig9691:18383..183891680870489.0368848-UTR-A-nodosum_M_contig9691:18383..18389Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9691 18384..18389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9691.2.1prot_A-nodosum_M_contig9691.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9691 17228..18383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9691.2.1

>prot_A-nodosum_M_contig9691.2.1 ID=prot_A-nodosum_M_contig9691.2.1|Name=mRNA_A-nodosum_M_contig9691.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MNLSNASLASKLEATTDLEREVEMLLTAGGASEAGLAEKEMEELQAKAYT
VEEVKERQAELSKMRALMFYQERKQHHMNKIKSKA
back to top

mRNA from alignment at A-nodosum_M_contig9691:17228..18389-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9691.2.1 ID=mRNA_A-nodosum_M_contig9691.2.1|Name=mRNA_A-nodosum_M_contig9691.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1162bp|location=Sequence derived from alignment at A-nodosum_M_contig9691:17228..18389- (Ascophyllum nodosum dioecious)
GTGAGAATGAACCTCAGCAACGCCTCTCTGGCTTCTAAGCTAGAAGCGAC GACGGACTTGGAGAGGGAGGTGGAGATGCTGCTGACCGCCGGCGGCGCCT CTGAGGCTGGGTTGGCCGAAAAGGAGATGGAAGAGCTCCAGGCCAAGGTA ATGTACCGCTCGTGCGTGTGCTGTACCGCGGAAAGGGGCGAGGTTAGGCG GGAGAGGGGGGAGGAGGGTGTTGGGATATCTTTCAGAACCGTAGAAGACC ATTGAACCAGCCGCTGGGGATAAGCAGTACCTTTTTGGGGGGGTAATTTT CATTCTATCTCCCCCTCCCCCCCGTACCCGAGGGAAATATCGATCGTTCA CCACACAAAAGTATCCCTGGATCAAACACGTAGTCACCTGGCTTTCCGCG TAGGCCCCCACGTTGCGCAGAAAATCGCATCATATAACACAGAGGGGGCG TGGAGCATTGTCGTTTAGCGCCGGTAGTTTCAACATGCCCACTTCATCCA TTAGTAGTTATGGGAAAATATATGCGCACATTCATTGGTCCATGGTGACC TGCAAAGGCAGCACCCGTTGCTGGAACTACCTTGAAAACTACTGGCCCTG TGCCGGAGGAGTTTCGGCAGTGAACGCCATCGGTACGCAATTGCGTAATC CGCTAAACTCGGGACTGACGCGATGGCTTATGGCGGTTTAAATAAACGGA CGCCACGGCGGAAATCGGGAGGAACCCCGTGAGTAAGCAACAGATTCAAC CTGAGTGTGGAGAATGAGCAGGCTGACGCGGAAAGAGACGGCCGAACCTG TCTCGCGAGACCAAATTCTCAGACGCAAACGGGGACAGGGAAATATCAAT TTTCCATGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGA TCCATACTCTGCTATATGTGATGGACATGAAAATTAAACACCGGAGGGCG AGCATCATGTGTGTGTGTGCCCTGCGGTATCGAATGCACGCCGGACACGA AACAAGTGCGCTGAGACTTGAGACACCCGAACGACGCTTCTCGCGCAGGC GTACACAGTGGAGGAGGTGAAGGAGCGGCAGGCTGAGCTGTCCAAGATGC GCGCCCTGATGTTCTACCAGGAGCGGAAGCAGCACCACATGAACAAGATC AAATCGAAGGCA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9691:17228..18389-

>mRNA_A-nodosum_M_contig9691.2.1 ID=mRNA_A-nodosum_M_contig9691.2.1|Name=mRNA_A-nodosum_M_contig9691.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig9691:17228..18389- (Ascophyllum nodosum dioecious)
ATGAACCTCAGCAACGCCTCTCTGGCTTCTAAGCTAGAAGCGACGACGGA
CTTGGAGAGGGAGGTGGAGATGCTGCTGACCGCCGGCGGCGCCTCTGAGG
CTGGGTTGGCCGAAAAGGAGATGGAAGAGCTCCAGGCCAAGGCGTACACA
GTGGAGGAGGTGAAGGAGCGGCAGGCTGAGCTGTCCAAGATGCGCGCCCT
GATGTTCTACCAGGAGCGGAAGCAGCACCACATGAACAAGATCAAATCGA
AGGCA
back to top