mRNA_A-nodosum_M_contig9674.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9674.1.1
Unique NamemRNA_A-nodosum_M_contig9674.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A2R4QPY7_9PHAE (Uncharacterized protein ycf35 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 9.650e-35
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  105 KVINKLGYPYIENKRQQNQNIEVPMIYSDNLKSTIYQKAHRNYVAFKSNKLDYDIITDSQSWTKK-IITIFLKS 323
            KVINKLGYPYIENK Q+NQNIEVP+I+S+NLKSTIYQK HRNYVAFKS+KLDYDIITDSQSWTKK IIT FLK 
Sbjct:   19 KVINKLGYPYIENKCQKNQNIEVPVIFSENLKSTIYQKNHRNYVAFKSDKLDYDIITDSQSWTKKEIITRFLKK 92
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BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A0R6M4I4_UNDPI (Uncharacterized protein ycf35 n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4I4_UNDPI)

HSP 1 Score: 96.7 bits (239), Expect = 7.670e-23
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 3 
Query:  105 KVINKLGYPYIENKRQQNQNIEVPMIYSDNLKSTIYQKAHRNYVAFKSNKLDYDIITDSQSWTKK-IITIFLKS 323
            KVINKLGYPYIE+    N NIEVP+I+  NLKS+IY+ + +NY+AFKSN L YDIITDSQSWT+K II+ FLK 
Sbjct:   19 KVINKLGYPYIEHN---NNNIEVPVIFPKNLKSSIYENSDQNYLAFKSNNLSYDIITDSQSWTQKEIISNFLKK 89
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BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A125QZS2_9PHAE (Uncharacterized protein ycf35 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A125QZS2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.580e-22
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 3 
Query:  105 KVINKLGYPYIENKRQQNQNIEVPMIYSDNLKSTIYQKAHRNYVAFKSNKLDYDIITDSQSWTKK-IITIFLKS 323
            KVINKLGYPYIE+K   ++ IEVP++ SD LKS+IY   H+NY+AFK NKL YDIITDS+SWT+K II++FLK 
Sbjct:   19 KVINKLGYPYIEHKL--HETIEVPIVNSDYLKSSIYDTTHQNYLAFKYNKLSYDIITDSRSWTQKEIISLFLKK 90
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BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A8F0F8T3_9PHAE (Uncharacterized protein ycf35 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F8T3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.010e-20
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 3 
Query:  105 KVINKLGYPYIENKRQQNQNIEVPMIYSDNLKSTIYQKAHRNYVAFKSNKLDYDIITDSQSWTKK-IITIFLKS 323
            KVINKLGYPYIE+K   N++IEVP+++S NLKS+IY  + +NY++FK + L Y IITDSQSWT+K +I  FLK 
Sbjct:   19 KVINKLGYPYIEHK--YNKDIEVPLVFSKNLKSSIYNNSCQNYLSFKFDNLSYSIITDSQSWTQKEVINRFLKK 90
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BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A8F0JZI3_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZI3_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.940e-15
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:  317 KKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRLIFQRFVD 445
            KKLELNYGY ETI QALDLGF+RSKVITTNNKNNR IFQR V+
Sbjct:   89 KKLELNYGYLETINQALDLGFIRSKVITTNNKNNRFIFQRCVE 131
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BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: D1J707_ECTSI (Uncharacterized protein ycf35 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J707_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.970e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:  317 KKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRLIFQRFVD 445
            KK+ELNYGYSETI QALDLGF+RSKV TTN KNNR IFQR+V+
Sbjct:   89 KKIELNYGYSETITQALDLGFIRSKVFTTNKKNNRFIFQRYVE 131
[Close]
BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A8F0JYK6_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYK6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.970e-15
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:  317 KKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRLIFQRFVD 445
            KKLELNYGY+ETI QA+DLGFVRSKV+T NNKNNR +FQR+V+
Sbjct:   89 KKLELNYGYAETINQAIDLGFVRSKVLTANNKNNRFVFQRYVE 131
[Close]
BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A7T8G5F1_SCYLO (Uncharacterized protein ycf35 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5F1_SCYLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.950e-14
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:  317 KKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRLIFQRFVD 445
            KK+ELNYGYSETI QALDLGF+RSKV+TTN  NNR IFQR+V+
Sbjct:   89 KKIELNYGYSETITQALDLGFIRSKVLTTNRNNNRFIFQRYVE 131
[Close]
BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A6B7EZ45_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZ45_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.690e-14
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 2 
Query:  317 KKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRLIFQRFVD 445
            KK+ELNYGYSETI QAL+LGF+RSKV+TTN  NNR IFQR+V+
Sbjct:   89 KKIELNYGYSETIAQALELGFIRSKVLTTNKNNNRFIFQRYVE 131
[Close]
BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Match: A0A1I9LVW8_9PHAE (Uncharacterized protein ycf35 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.530e-13
Identity = 32/43 (74.42%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:  317 KKLELNYGYSETIYQALDLGFVRSKVITTNNKNNRLIFQRFVD 445
            KK+ELNYGYS+TI QAL+LGF+RSKV+TTN KNN+ IFQR+V+
Sbjct:   89 KKIELNYGYSKTIMQALNLGFIRSKVLTTNKKNNKFIFQRYVE 131
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2R4QPY7_9PHAE9.650e-3586.49Uncharacterized protein ycf35 n=3 Tax=Fucaceae Tax... [more]
A0A0R6M4I4_UNDPI7.670e-2367.57Uncharacterized protein ycf35 n=27 Tax=Laminariale... [more]
A0A125QZS2_9PHAE1.580e-2266.22Uncharacterized protein ycf35 n=13 Tax=Sargassacea... [more]
A0A8F0F8T3_9PHAE8.010e-2060.81Uncharacterized protein ycf35 n=2 Tax=Laminariales... [more]
A0A8F0JZI3_9PHAE4.940e-1586.05Uncharacterized protein ycf35 n=1 Tax=Desmarestia ... [more]
D1J707_ECTSI6.970e-1581.40Uncharacterized protein ycf35 n=2 Tax=Ectocarpus s... [more]
A0A8F0JYK6_9PHAE6.970e-1579.07Uncharacterized protein ycf35 n=1 Tax=Chorda asiat... [more]
A0A7T8G5F1_SCYLO1.950e-1479.07Uncharacterized protein ycf35 n=4 Tax=Scytosiphona... [more]
A0A6B7EZ45_9PHAE7.690e-1476.74Uncharacterized protein ycf35 n=1 Tax=Cladosiphon ... [more]
A0A1I9LVW8_9PHAE1.530e-1374.42Uncharacterized protein ycf35 n=1 Tax=Pleurocladia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9674contigA-nodosum_M_contig9674:11677..12138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size462
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870486.072765-UTR-A-nodosum_M_contig9674:11676..118121680870486.072765-UTR-A-nodosum_M_contig9674:11676..11812Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9674 11677..11812 -
1680870486.0976255-UTR-A-nodosum_M_contig9674:11962..121381680870486.0976255-UTR-A-nodosum_M_contig9674:11962..12138Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9674 11963..12138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870486.084691-CDS-A-nodosum_M_contig9674:11812..119621680870486.084691-CDS-A-nodosum_M_contig9674:11812..11962Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9674 11813..11962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9674.1.1prot_A-nodosum_M_contig9674.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9674 11813..11962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9674.1.1

>prot_A-nodosum_M_contig9674.1.1 ID=prot_A-nodosum_M_contig9674.1.1|Name=mRNA_A-nodosum_M_contig9674.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MIYSDNLKSTIYQKAHRNYVAFKSNKLDYDIITDSQSWTKKIITIFLKS*
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mRNA from alignment at A-nodosum_M_contig9674:11677..12138-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9674.1.1 ID=mRNA_A-nodosum_M_contig9674.1.1|Name=mRNA_A-nodosum_M_contig9674.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=462bp|location=Sequence derived from alignment at A-nodosum_M_contig9674:11677..12138- (Ascophyllum nodosum dioecious)
AATCTTTCAGTTTATAAATTTCTCGATATTAAAAAAAAGATATATATAAA
TATGTCTCATTATACTTCTATTAAAACAAAATATACTAATTCTAATATTT
TTAAAAAGTGATAAATAAGCTTGGTTATCCTTATATAGAAAATAAGCGTC
AACAGAATCAAAATATTGAAGTTCCAATGATTTATTCTGACAATTTAAAA
TCTACTATATATCAAAAGGCTCATAGGAATTACGTAGCTTTTAAATCTAA
TAAATTAGATTATGATATAATTACAGACTCACAATCTTGGACTAAAAAAA
TTATTACTATATTTTTAAAAAGTTAGAACTAAATTACGGTTATTCTGAAA
CTATTTATCAAGCTCTTGATTTAGGATTTGTTAGGTCAAAAGTTATTACA
ACGAATAATAAGAATAACAGACTTATTTTTCAACGGTTTGTTGACCCTAA
TTTCTAATAAAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9674:11677..12138-

>mRNA_A-nodosum_M_contig9674.1.1 ID=mRNA_A-nodosum_M_contig9674.1.1|Name=mRNA_A-nodosum_M_contig9674.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig9674:11677..12138- (Ascophyllum nodosum dioecious)
ATGATTTATTCTGACAATTTAAAATCTACTATATATCAAAAGGCTCATAG
GAATTACGTAGCTTTTAAATCTAATAAATTAGATTATGATATAATTACAG
ACTCACAATCTTGGACTAAAAAAATTATTACTATATTTTTAAAAAGTTAG
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