mRNA_A-nodosum_M_contig967.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig967.16.1
Unique NamemRNA_A-nodosum_M_contig967.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5L4V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.410e-18
Identity = 36/62 (58.06%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+LKK+G +RIT +Y+RLN
Sbjct:   56 KPVASRPYRINPLMQKKVDAVLDQYLAAGVIQHSTSPWASPLVVILKKDGSVRITVNYKRLN 117
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5KUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.830e-18
Identity = 37/66 (56.06%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLNEATV 198
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+LKK+G +RIT +Y+RLN   V
Sbjct:  189 KPVASRPYRTNPLMQKKVDTVLDQYLAAGLIQHSTSPWASPLVVILKKDGSVRITVNYKRLNALIV 254
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5KVK4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.980e-18
Identity = 35/62 (56.45%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP + K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:   56 KPVASRPYRINPFMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 117
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5K9P3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.280e-18
Identity = 35/62 (56.45%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+   SP+A+P+VVVLKK+G +R T +Y+RLN
Sbjct:   12 KPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHPTSPWASPLVVVLKKDGSVRTTVNYKRLN 73
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5KZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ53_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.630e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:   78 KPVASRLYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 139
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5KDT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:  196 KPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 257
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5KDL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:  189 KPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 250
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5K4H4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:  885 KPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 946
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5K6L2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:  629 KPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 690
[Close]
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.730e-17
Identity = 35/62 (56.45%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNGKIRITCDYRRLN 186
            KP+ASR YR NP++ K+VD+++D+YL AG+I+ S SP+A+P+VV+ KK+G +RIT +Y+RLN
Sbjct:  709 KPVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLN 770
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig967.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4V5_9PHAE1.410e-1858.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUR5_9PHAE1.830e-1856.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVK4_9PHAE3.980e-1856.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K9P3_9PHAE7.280e-1856.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KZ53_9PHAE1.630e-1756.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDT3_9PHAE1.720e-1756.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDL4_9PHAE1.720e-1756.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H4_9PHAE1.720e-1756.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6L2_9PHAE1.720e-1756.45Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L323_9PHAE1.730e-1756.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig967contigA-nodosum_M_contig967:64037..64234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog936053.I1CG80
PFAMsAsp_protease_2,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC
Model size198
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.96e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size198
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870484.8734615-CDS-A-nodosum_M_contig967:64036..642341680870484.8734615-CDS-A-nodosum_M_contig967:64036..64234Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig967 64037..64234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig967.16.1prot_A-nodosum_M_contig967.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig967 64037..64234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig967.16.1

>prot_A-nodosum_M_contig967.16.1 ID=prot_A-nodosum_M_contig967.16.1|Name=mRNA_A-nodosum_M_contig967.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp
KPIASRSYRYNPVVAKEVDSIIDKYLKAGIIRRSQSPYAAPIVVVLKKNG
KIRITCDYRRLNEATV
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mRNA from alignment at A-nodosum_M_contig967:64037..64234-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig967.16.1 ID=mRNA_A-nodosum_M_contig967.16.1|Name=mRNA_A-nodosum_M_contig967.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig967:64037..64234- (Ascophyllum nodosum dioecious)
AAACCAATCGCTTCGCGCAGCTACAGATACAATCCAGTGGTAGCGAAAGA
GGTCGACTCGATAATAGACAAGTACCTAAAGGCAGGCATAATAAGACGCT
CACAATCGCCATACGCTGCTCCGATAGTTGTGGTACTAAAGAAGAATGGA
AAAATTCGAATTACCTGCGACTACAGACGCTTAAACGAAGCTACAGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig967:64037..64234-

>mRNA_A-nodosum_M_contig967.16.1 ID=mRNA_A-nodosum_M_contig967.16.1|Name=mRNA_A-nodosum_M_contig967.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig967:64037..64234- (Ascophyllum nodosum dioecious)
AAACCAATCGCTTCGCGCAGCTACAGATACAATCCAGTGGTAGCGAAAGA
GGTCGACTCGATAATAGACAAGTACCTAAAGGCAGGCATAATAAGACGCT
CACAATCGCCATACGCTGCTCCGATAGTTGTGGTACTAAAGAAGAATGGA
AAAATTCGAATTACCTGCGACTACAGACGCTTAAACGAAGCTACAGTG
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