|
|
Homology
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: D7G240_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G240_ECTSI) HSP 1 Score: 282 bits (722), Expect = 1.100e-90 Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACFNS 637
MIYNLYIFNRKGKCLYYREWNRPQNTLENAAD+GEEQRLMFGMLYSLKE+VTKMS DPA+ GLHALKT SYTLHHLET SGLRFVLNTDNNAGDLRPTLR LYSGIFVEYVAKHPQFNPVDGSPIRL AFD+RLEEYLRSLACF S
Sbjct: 1 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADDGEEQRLMFGMLYSLKEVVTKMSTDPASAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVEYVAKHPQFNPVDGSPIRLPAFDSRLEEYLRSLACFKS 146
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A835ZQ36_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ36_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.010e-53 Identity = 89/144 (61.81%), Postives = 107/144 (74.31%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACF 631
MI+N YIFNR GKCL+Y+EWNRPQNTL++ D+GEE+RLMFGMLYSL+ELV KM L + T SYTL+ ETASGLRFVLNTDN AGDL LRH+Y IFV+ V KHP F P G P++L F+ LE+Y++SL CF
Sbjct: 1 MIFNFYIFNRNGKCLFYKEWNRPQNTLQH--DDGEEKRLMFGMLYSLQELVGKMGGGDGKGALQSFTTDSYTLNFFETASGLRFVLNTDNRAGDLTAILRHIYGNIFVDLVVKHPMFEPKAGVPLQLPMFEEELEKYMKSLPCF 142
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A7S2AMS8_9STRA (Trafficking protein particle complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMS8_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.130e-52 Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACF 631
MIYN YIF+R+G CLYYREWNRP ++ + D EE++L+FGML+S+KELV++MS P GLH LKT ++TLHHLETASGLRFVLNTD + GDLRP+LRH++S IFVEYV K+P ++ + PI F L YL SL+CF
Sbjct: 1 MIYNFYIFDRRGTCLYYREWNRPYSSFSDY-DAAEERKLVFGMLFSIKELVSRMSSRPGTEGLHCLKTNNFTLHHLETASGLRFVLNTDGDTGDLRPSLRHIFSSIFVEYVIKNPLYDRLSTEPIDSPLFSRHLGVYLESLSCF 143
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A7S2RBL8_9STRA (Trafficking protein particle complex subunit n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBL8_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.340e-50 Identity = 84/152 (55.26%), Postives = 112/152 (73.68%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACFNS*LGVEG 655
MIYNLYIFNRKG CLYYREW RP N+ D+ EE++L+FGML+S+KE+V++M+ A GL +++TG++TLHHLET +G RFVLNTD DLR L+H+YS IFVEYV K+P F+P+ + I + FD+ L EY++ L+CF S V G
Sbjct: 1 MIYNLYIFNRKGVCLYYREWKRPFNSFP-PDDQDEERKLVFGMLFSIKEMVSRMTPRTADAGLSSIQTGNFTLHHLETVTGFRFVLNTDTATTDLRQNLQHIYSEIFVEYVLKNPLFDPMTSTSIEIPLFDSNLSEYIQLLSCFRSGAVVSG 151
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A812VIE8_SYMMI (Trafficking protein particle complex subunit n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VIE8_SYMMI) HSP 1 Score: 153 bits (387), Expect = 4.810e-41 Identity = 70/141 (49.65%), Postives = 101/141 (71.63%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSL 622
MIYNLYI++RKGKCL+Y+EW+RP NTL A D GEE+RLMFGML+SLK+L K++ GLH +KT +YTLHH E+ +G+ F++N+D + DL L+H+Y+ IFVE V ++P + I F+ +LE+Y+R++
Sbjct: 1 MIYNLYIYDRKGKCLFYKEWSRPMNTL--ADDPGEEKRLMFGMLFSLKDLAAKLAPSIGPQGLHTVKTNAYTLHHFESVTGMSFIMNSDPSLPDLYHNLQHIYNNIFVECVIRNPLYRHCPHDAIDCPLFEKKLEDYVRTI 139
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A067CRD6_SAPPC (Trafficking protein particle complex subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRD6_SAPPC) HSP 1 Score: 151 bits (381), Expect = 4.560e-40 Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKT---GSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACF 631
MIYNLYIFNR G CL Y EWNR + + +D EE+RLMFG+++SLKE + KM+ + T +LKT +YT HHLETASGLRF+L +DNN GDL+ L+HLY ++VE V K+P + PI+ + F + Y+ SL CF
Sbjct: 1 MIYNLYIFNRAGACLLYEEWNRSSDAM-TLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVRHYMESLPCF 146
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A4D9D8U8_9STRA (Trafficking protein particle complex subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8U8_9STRA) HSP 1 Score: 150 bits (380), Expect = 6.570e-40 Identity = 82/149 (55.03%), Postives = 107/149 (71.81%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAAT---GLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDG-SPIRLR-AFDARLEEYLRSLACF 631
MIYNLYIF+R+G CL+YREW RP NTL A D EE++LMFGMLYS+K LV + A + GL+ L+T +YTLHH ET +GLRFVLNTDN+ D+R LRH+YSGI+V++V ++PQ+ +G S RL AF LE+Y+ +L F
Sbjct: 1 MIYNLYIFDRRGACLFYREWCRPLNTL--AEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSGIWVQHVVQNPQYKIGEGGSAGRLPPAFAQSLEQYVTNLPGF 147
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A6A4ZH59_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZH59_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.000e-38 Identity = 75/163 (46.01%), Postives = 103/163 (63.19%), Query Frame = 2
Query: 158 RIRVDARHAVPERAMIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGS---YTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACFNS 637
R+ +D P MIYN YIFNR G CL Y EWNR + + D EE+RLMFG+++SLKE + KMS + H+LKT YT HHLET SGLRF+L+TDN +GDL+ L+++Y ++VE V K+P + P++ + F A ++ Y+ SLACF S
Sbjct: 5 RLPID--RTTPTAVMIYNFYIFNRSGACLMYEEWNRSNDAM-TLNDAEEEKRLMFGLIFSLKEFLRKMSPPTSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNQSGDLQEALQYMYGNLYVELVTKNPVHDARSTKPVKCKLFRANIKAYIESLACFKS 164
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A7R9YCB9_9STRA (Trafficking protein particle complex subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCB9_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.160e-38 Identity = 75/146 (51.37%), Postives = 97/146 (66.44%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATG-----LHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSL 622
MI+N+YIF+R G CL+Y+EW+RP NTL D GE+ RLMFGML+SLKE+V KMS A G + ++T +Y+ H ET +GLRFVLN D A LR L +Y+GIFVE V K+P ++P DG P F+ LE YLR+L
Sbjct: 36 MIFNMYIFSRSGSCLFYKEWHRPLNTLSGEEDPGEDARLMFGMLFSLKEIVGKMSGRSAEKGERREDIQVMRTSTYSTHLYETQTGLRFVLNVDAAAPSLRGELEEIYAGIFVEKVIKNPLYDPRDGPPEIPEDFEEELEAYLRAL 181
BLAST of mRNA_A-nodosum_M_contig964.4.1 vs. uniprot
Match: A0A8J5XSS5_DIALT (Trafficking protein particle complex subunit n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSS5_DIALT) HSP 1 Score: 140 bits (354), Expect = 3.260e-36 Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 2
Query: 200 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLRHLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACFNS 637
MIYNLYI+N+ G CL Y EW RP T +A + Q+LMFG L+SLK++V K++ D G HA T + L++ ETA+GLRFVLNTD N GD+R +R++YS +FVEY +K+ + G P+ F L++Y+RSL F S
Sbjct: 1 MIYNLYIYNKHGVCLLYHEWKRPNITAGSAMAD---QKLMFGFLFSLKQVVNKLTPDSGMPGFHACSTNKFKLNYYETATGLRFVLNTDPNCGDMRECIRYIYSAVFVEYASKNALYTA--GEPLDNEQFLFALDKYVRSLPAFTS 141
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7G240 |
| Preferred name | TRAPPC1 |
| PFAMs | Sybindin |
| Model size | 1528 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K20300 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005768,GO:0005773,GO:0005775,GO:0005793,GO:0005794,GO:0005801,GO:0005829,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006955,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022607,GO:0030008,GO:0030141,GO:0031267,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060205,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098772,GO:0099023,GO:0099503,GO:1990070,GO:1990071,GO:1990072 |
| Exons | 3 |
| Evalue | 1.6e-96 |
| EggNOG OGs | KOG3368@1|root,KOG3368@2759|Eukaryota |
| Ec32 ortholog description | Sybindin-like protein |
| Ec32 ortholog | Ec-11_002250.1 |
| Description | Rab guanyl-nucleotide exchange factor activity |
| Cds size | 441 |
| COG category | O |
| BRITE | ko00000,ko04131 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870481.2196472-UTR-A-nodosum_M_contig964:21866..22065 | 1680870481.2196472-UTR-A-nodosum_M_contig964:21866..22065 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig964 21867..22065 + |
| 1680870481.2669208-UTR-A-nodosum_M_contig964:29981..30869 | 1680870481.2669208-UTR-A-nodosum_M_contig964:29981..30869 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig964 29982..30869 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680870481.2322953-CDS-A-nodosum_M_contig964:22065..22098 | 1680870481.2322953-CDS-A-nodosum_M_contig964:22065..22098 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig964 22066..22098 + |
| 1680870481.2429936-CDS-A-nodosum_M_contig964:28741..28852 | 1680870481.2429936-CDS-A-nodosum_M_contig964:28741..28852 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig964 28742..28852 + |
| 1680870481.2560587-CDS-A-nodosum_M_contig964:29684..29981 | 1680870481.2560587-CDS-A-nodosum_M_contig964:29684..29981 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig964 29685..29981 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig964.4.1 >prot_A-nodosum_M_contig964.4.1 ID=prot_A-nodosum_M_contig964.4.1|Name=mRNA_A-nodosum_M_contig964.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKEL
VTKMSKDPAATGLHALKTGSYTLHHLETASGLRFVLNTDNNAGDLRPTLR
HLYSGIFVEYVAKHPQFNPVDGSPIRLRAFDARLEEYLRSLACFNS* back to topmRNA from alignment at A-nodosum_M_contig964:21867..30869+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig964.4.1 ID=mRNA_A-nodosum_M_contig964.4.1|Name=mRNA_A-nodosum_M_contig964.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9003bp|location=Sequence derived from alignment at A-nodosum_M_contig964:21867..30869+ (Ascophyllum nodosum dioecious)
ACAGCTGCCGCTCGGATGAAACCTTGAAGACGACGTACTTGGTTCTGTGG
TGACCTTTCATCGATCCGCAGTTGATTTTTGCAGGGTCTCGTTCGCCTCG
CTACCCCCCGCTGCTGCTGTGCGTTCTGTTGCTTCGACGCGGGCCCATCC
TCGATAGCGTATTCGAGTCGACGCTCGACACGCTGTACCTGAGAGAGCCA
TGATCTACAACCTGTACATCTTTAATAGGAAGGTGGGTACGGCACTTATG
CTGATGGACTTTGTATTGGCCTTGGTTATGCTCCTGTCTATGGTGGGTGT
GTTTTTTGTTTGATTGTTATCCTCCTTGGCCCCTTGACTGGAAAGTACAG
CTGTACAGTACTAGACTACACTGTCTGTAGTACTTGTTACTCGTCTACAC
GTCTTTTGAAAATCTGAACGCGTCTAGACTAGACCTTCTGAGCATCCCCC
AGTCAGGGGGGGGAAATGTCAAAACGTTTAGGTGGGATCATAGGCTGCAA
AGCCACATTCAGCGTATTGGTTGCCAACCCGAAAAACCTACTTTACACGG
TGGCCAATCCCGCTCTCCTCGTGGTCTTCTGATCAGGGAAAAGAGAACAA
AAGAAAAAGTCTGGCGGCATACTGTGTGCTGTACTGTATATTGCGCACAA
CCGTCCAACTCTAATAATACTGTAGTCTAGTTACAACAGAGCTACAAACA
GTTACAACATAAAGTTACAGAAGTAGTTCAACGGGGCCCCTTTTTCCTAT
GTGTGTGTGTTTTCTTCCCATTCATTCTGGACTTCAAGTTCGTTGGACGT
ACCAGCCGGGGCGACACAAGAGGAAGGGTTACACAGGATTTGTCATCCAC
CTTCTTTCTCCGGACGGTTATTTTTCTCGTGAGAAGGATTCAGCCATTCC
TTTCCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGACCGGAGAT
TCGATGCCGCTTGGATCGGCTCCAACGCTGGAGGAGACAAGACGAGCAAT
CCGGGGGATGCAAAACTGGAAAGCGCCTGGCCCTGACTCCCTCGTGGCAG
AGCTACTCAAGATCGATGAACCCGCCGAGCCCATCGTTCTCGAACGTTTC
CATGCCATTCTTGTCGAAGTGTGGACTGGAGGGGAAGTTCTACAGCAGTG
GAAAGACGCCACCATCAAGGTGCTCTACAAGAAGTCGGACCGATCCAACT
GTAATAACTACAGGGGGATCTCACTTCTCTCGCACGCAGGCAAAGTGCTT
CTGAAGGTCGTAGCCAACCGCCTCAGCGACTACTTCGAAACCCACGGCAT
CCTACCAGACGAACAGTGCGGCTTCCGACCGGAACGATCCACCGTCCACA
TGCTGTTCGTAGTGCGTCGACTTCAGGAACTAGCGCGGCGGCGGAGAATA
CCGCTGTACATGTGCTTCGTTGACCTCCAAAAGGCTTACGATTCGGTCGA
CCGAGAGCTGCTGTGGAAAGTGTTGGCCCGAGCCGGTGTCCCGGAGGAGA
TGATCGCAGTTATCCGCCAGTTCCATGACGGCATGCAGGCTCAGGTGCGC
ATGGACGACGGGGAACTCTCGGACTGGTTCGAGGTTACGCAGGGATTGAG
ACAAGGATGTGTGCTATTTCCGCTACTGTTCAACATTTTCTTTGCAGCGG
CGACCGAGGTCGTTCTTGTGCGTTTCAGCGAGGACGACACGATCCTAAAG
GATCTGGTGTACCTCGAAGAGGAGGCTGGGGTGGGGACGGGGACACCGTT
AGAACGCGCGCGGAGGGCGGTTTGGGGAATGTTTTATGCGGACGACGCCG
GCGTCGTATCGAGATCCCAAGAAGGGTTGGCGAAAATGATGATCACTATC
GTGGAAGTGTTTGGGGAATTTGGCCTGACAGTGTCGGAGAAGAAGACAGA
GACTCTCTTGATGTGGGCGCCGGAGAAACAGCCGAAGAAAGGGGGATCGC
CGCCACCACCACTTGTCATCGAAGCAGCGGGGCAAAAGTACGCCCAGACC
GCCCAGTTCCTATACTTGGGCGGCCTTGTCAACGAAGATGGCAAACTCAC
GCAGGAGATCAACCACCGGAGCAGAGCAGCGTGGGCAAGCATCAGGAGGT
TCTCCCGGGAGCTCTTCGACCGGCCGAGAGCACCGTGGAGACTTAAGGTT
CGACTGTTGAGAGCGGAGGCGATGAAGGCCCTACTATACGGATGCATGAC
GTGGCCCCCCCGCCTCGACCACTACCGGTTACTGAGGAGGACACACCACC
GACTACTCCTGCGAGCTATCGGGTACCGCCGCGAGCGCGGCACCTACCGA
CAGCTTTCGTACGCTCAGGCCCTCAAGAAGACTGGGTGCCAAAGCGTGGA
AGCTACCATTCGACAACGGCGACTTTTGTTCGCGGGAGCCATGGCCAGAC
AACCCGCCGGGCGCCTCCCGAAACGGCTGATGGACGGAACACTAGTCGGG
GGGGAAGATCCAGGCAAGGGACGCCCGGAGCAGAATTGGATGGATTGTCA
CAAGGACGACTTCCAAGCGTTCGGCGCCACAGACGGCTCTACGGTGGACA
ACCGGCTCACATTCGGAGTTGACAGAGCCGTATGGACCCTTGCGGCGAAG
ATGGACGATGGGGTGCCGTGGCACAAGGGGCTGTTGCAGGGAGCGGAAAA
GTTCATGACCTCCTGGCACAAGGAAGAAGAGGAGGCCAGCCGACGACGTG
CGACCAAACGAGACTTTCGTGATCTTGAGCCCCCCACACATTTGTAGGTA
GGTGTAGGGAATGGCCTGGCCGGTGCAAACCCGGCGGTGAGTACACCCCG
GCCTAGTAGGGGTACAAGGATAGAATCATGCGATTTTATTGTCTTGATTG
GTGATCCTTGATTCTTCTTTTTCGTTTCATTTTGCTTGACCTCGCGTGTC
GAGTGGGAGCGATGGGCTCTATCTATCTCCTTTGTCGTGTCGCCTGCGAC
GTCTGACTGTCTGGAGCCTTATTTTTCTGGGGGGGGTTATTTTATTTTCC
AATTATCGCGTGTGTGTTGACTTTTCTGGGTCCTTTCATTTCTTTCCGAT
ATGTGTACCCTGTCTGGGTAGTTAGCCTGTGACCACGGAAGGCGTTCGCG
CCAGTTGGACCAGTACGGATGTTAGAAAGTACTGAGTAGAGATCGGAACG
GCTTTTAATGTGAAGACAACAACTATAACAACGATTTTTCTTTAAACAAC
AACGACTTTAATCCTGCTCCACCCGTTGGGCATTTTTAGTTTTGTTTTTT
AGTTTTTAAGTGAGAAAAATCCCGTTTGCCGGGGTCGAACTACGAGGTAC
CTCTGAGCTACCGGGGCGACCGGCTCATAGGAATAGAAAACCTCATTTAT
ACTTCGTATGATTTAAAAATAAAAAATGCCCAACGGGTGGAGAACGATTA
AATCGTTAGTACACAAAATTCGACTTCACAGTCGACGAGGGAAAGGAATG
GCTGAATCCATCTCGCGAGAAAAATGAAGGCACGCACCGCAGAAAGAAGG
TGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTAC
GTCCAACGAACTTGATGTCCAGAATGAATGGGAAGAAAACACGCAAGTGC
ACATCCGGCGATAGGGCAGTCTACCTGCACCGAGCTGGCTCGGGGTCCAT
GGGTCACAGGAGGTGTTTGAAGGGTTATGACCGTCCGTCCAAATAGTATA
GTGAGAAATAACGAGGAACGGTCCTGGGCTCCGACACGATTTCCTTGGTA
TCATGCCACATGACCTACAAGCCCCCCCAGGCCGATAGCCCTCAGTCATA
GGATCACATCGCCGGTACTTTTAACATGCCCACTCCATACCAACAGTGAT
TGTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCTGCCAAGGC
AGCACTCGTTCGGAATTACCTTGAGTTTTAATGGCCCCGTGCCGGCGAAC
TTTCGGCAGTGAACACCATCGGTACGCAATTGCGTGACCCGATAAACTCG
GGACTGACCCGATGGCGTATGGCGGTTATAATTGAATAAATGGACGCCGC
CGCGGAACTCGGGAGGGATCCCGTAAGTAAGTACCAGATTCAGCCTGAGT
ATGGAGATGAGCAGGCTGACGCGGGATGGAACTGCCGAGCCCGTCTCGCG
AGACCAAATTCTCAGGCACGAACGCGGACAGGGAAATATTCATTTTTTCT
GTTCAGTTGACCACGTGCAGGACTGGCAACCTTACCCGGTTGATCCATAA
TTCTTGCTATATGTGTGACCATACATATGTACCGCCGGTACTTTCAACAT
ACCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGTGAAAATTAATT
GGTCCATGGTGACCTGCCAAGGTAGCACTCGTTCGGAACTACCTCGAGGT
TTACTGGCCCCGTGCCGGCGGACTTTCGGCAGTGAACGCCATCAATACGC
AATTGCGTGACCTGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTT
ATAAGTGAATAAATGGACGCCGCCGCGGAACTCGGGAGCAATCCCGTAAG
TAAGATCAGATTCAGCCTGAGTATGGAGACGATCAGGCTGACGCGGGACG
AGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGAACGCAGA
CAGGGAAATATTCATTTTTCCTGTTCAGCTGACCACGTGCAGGACTGGCA
ACCTTACCCGGTTGATCCATACTCTTGCTATATGTGTGACCATACATATG
TACCTTGCATAGCTGCCATGGCGCCGCGGTTGCTCCGTTATCCGAGGTGC
CCAAACAAGGCTCTTCTTCAGTTTTCTCTCTGTTTTCTCTAATAAAGCTC
CATCTGACCTCCCACCCATTGGCTAGTAGCTACAGTCGTGTGACGGTTGC
ATCAGTATTTTGTGCCCAAAATATATATATTTTTCGGCCCAAGTGTGTGG
GGCCCCGTTAAAAAATCAAACTCAGCGCATCTAGACCTTCTGAGCATTCC
CCAGTCGGGGAAAAATATCAAAACGTTGAGAGATGGAATTCATAGGCTGC
AAGTACAAAACCTCACCATGGCATTCAAACGGGTTCCCCGATGGTAGTAA
CATTGGGTCAACAGTTGTTATACACCCCCTCGCACCTGTTCGAGGTACTG
TACATCGTGTGTACAGTAGGCCTTTTAAGAAAAATCTGAACGCATCTAAA
CCTCTGAGCACCCACCCTCAGGGGAAAAAAATGTCGAAATATTTAGGTGG
GGACATTGGCTGTAGGGACAAAAACTTTTCATAGTTATCTCAAAAGGGTT
CCCCAATGTAGCTCTAGTCACATAGGATCAACAGAGTATAGTATCGGGGA
GAAGCCCACCGTGAGACTGTACACTTGCATCAATCACCATTCAGGGACAC
CAAAACCACAATAATTTGAAGTTATTAATAGTTGTTCTCATTTATCTCGA
TCAAGGGGATCTCAATGGGCACTTCGAATCTGATATAACTTTATGAAAGA
CAACGTCCCATCTGCTTTATCGTGTGCGTAAAAGAAAAATATGAACGCAT
CTAAACCTTCTGAGCATCCCCCAAGACATTGATCTCCTCCGCCCCCATCT
GGCTAGGTTCTCCAGTGGGCCGCACGAGCCAATGATCCATCTCGTACGTA
TTGTAATAATCTATAACATTTACCAGGTACACAGTGTATGGTGGAGCTCT
AGAGGTGCTTACTTGTGCATGTCCTTCGCTCGTGCCCAGCAGAATGACCA
CCGTTGCAACAGCAGAAACAGTATCCTGTGGATGACTCATCCTGCCTACC
CTGGTAGTCCTCGTCTCTCCCTGGCCGCACCTCCTGCGCGTTTTTTTTTT
TTTTTTTTTTTTGACGTTGGAAGGGGAAAAAAAGGCATTCGCCTGCCTCC
ATGAGCGAAATTCCTACCGATTGATGCCGATTCGTTTTGAAAGCTGCATG
CTGCTCAAGCGGCATGTAGACGTACCCACTACAATACTCTTGTTACTAAC
AAGGACAAACCCGATTAACCCTTTTGGTACTATCGGTCTGACAACGGCTA
TTTTTTCTTCTTCTTGACAGTCCTGTGCTGCTCGCGCTTTTTTACGTGGG
CCAGCCACCATGATCAGTCATTTTACAGTACACTGTTTACATACCCCAAG
CAGTATACGCCTACTTCGTCTCTAACCGTGGGTGTCAAGAGGTTGCTAGT
GCCAAATTAGTACGACATTTTTCTGGGAAGTTATAGTAAAGTCAAGTGAA
GAACAAAATTGGTTTGGGGTTTACATTTTGTACCGTGCACAGGTTTGCGG
GGTTGATTCATGGTAGATCCTTGCTGAGCCGTATCTTGGGACTGCTTTTG
GTTTGGGAAGGTGCTGTACTCGGGCTCCTGATCTCGCTGCCTAATCAAGG
CTGGAAAATAAACAGGCGGTCGACCGCCTGTTAAGCCCTTTCAAGTACCA
AAGGGGTTGAGTGTCATGAAGATATTTTATCTTGGCCCTTTTATCTTTGC
AGCATATGACCCCCTCCTAAATGTTTTGACAAAAAAAAAACTGACTGAGG
GATATGCTCAGAATGTCTAGATGCGTTCAGTTTTTGTTTTTAAATAAGGA
CAGTACTGCGTTGTATATTCGACGTAAGTCTTGGCGCATGATTCTGCTGT
TTTGAAGACTCCAAATGCAGCAGCACCAACTAATGAGTCGGCAGTCGATA
AAGTTTCTTTGAACAATCATCGGCATCCTTTTGGTAGAACGCCTTACCCT
CTGTCTAACAAAACCGAAAAAACAACAACCCTCGTCCGCATCTTCTGTCT
TACGCACCTCCGTGACGGCAACACCTCGCCTTGCCTTAACCTGCCTTACC
CCCCATTGCACGATGAACGTAACAGGGCAAGTGCCTCTACTATCGTGAAT
GGAACCGCCCCCAGAACACGCTGGAGAACGCCGCCGACGAAGGCGAGGAG
CAGCGGCTCATGTTTGGCATGCTCTACTCTCTCAAGGCAAGCGGGTTAAT
ACATATTCGTTGTAATATTACAAAGATGCCTTAAGGTGTCGTGAATTTCG
GCATTTCATGCTGTATATTACAGTGTAAAAGACTTGTGCCGGAAGCTGCT
GCTGGAGAGCCACTTTTAGTTTTATAGCTCTAGTGTTTAGTTACTAAGTA
ATAATATAATATTAGACTACTCTTGCCTGAGCTGTTCCTTCATGCCAATA
TTAGGATATTTTGAAGCCCTTTTATTGTGCTATTAGTAAGTACAATAGTT
GGATAGTTGGAGCCACTGTCTGTATCCGCCCGTGTGTGTCAGCTCCATAC
TCGTACGTTTGTATCCATTGATACGGTAGAGTCTACACGTCATGGAGTAA
GGCGTCCGTTTGCGATGTGTCCTAATTGAGAGCGCCTAGTTTTACGCAGG
CAATGATCGGCATTTTGTGAAGCTACCTGACAGTCTCGTGCCGCCAGGGA
ACAGAAGTACGTACAGTACAGTACAAAACAGTACAGTACAGTATAGCAGA
GTATATTCACAACTCGAGTACACTTGAAAATGCCATGCTTGTATACGTGA
TGCTGTGGCTCTTTTAAGGGCGGTGTGGAGTGTGTGCGCACCAGTTGGGC
CCCCTTTCCAGAGTTTCGATTGAGAACGCTCAAGTCATGGTTGACCGATC
AAGGCTGGGATGGGATCCTAATGCGCGAATCTCCACCAAGTACAGCACAA
CAATACAAGCGATGCGTCCGTCAATCCTTAAGCTGCGTTCCGACCGCGCT
CTCGCTACCACTCGCTCCCCTTTCACCATCATGCTATCCTATCCTATCCT
ATCCTATCCTGTCCCCAGGAACTGGTGACCAAGATGTCCAAGGACCCTGC
CGCGACAGGACTGCACGCCCTCAAGACGGGCTCTTACACGCTCCACCACC
TGGAAACGGCCAGCGGGCTCCGCTTCGTCCTCAACACGGACAACAACGCG
GGCGACCTGCGGCCGACCCTTCGGCACCTCTACTCGGGGATCTTCGTGGA
GTACGTGGCCAAGCACCCGCAGTTCAATCCGGTCGACGGGTCTCCTATCC
GGCTGAGGGCGTTCGACGCTCGGTTAGAAGAATACCTCAGGAGCTTGGCG
TGCTTCAATTCGTGACTCGGGGTGGAGGGGGGGAGAGGAGAGGTATAACG
CATACCACAGCACTGTTGTAGTACTTCCTCTGTCTCATAAGTCTGGGGCG
TTATGGGCGTGAGATTGTTCGAGTATAACGGGGTTGCCAATAACCATAAA
CTTGGGTTCGTTGTAAAGATGAAGCGCAGACAAAGCTGATGAAAAAAAAA
AAAAAAATGAGCATTTTTCCAATCCAAAAATTCAGTCAAAATATTCCCAA
TTTTGACACGTTAGAACGGGTGTGGCAAAGCCTCTTCAAGGTTTACAACC
AAACACTCCGTCAGATGGGCGATAACGACTTTAGTGTGGAGCATACCGGG
GTGAGGGTGCGGCAGATGGCGGGGACGTTGGAAAGAGTGGTAAAATACGA
TGCGGTGGCCTTCCAAAGGCTTGGGACTTTCTGGCGTCCAGCCACGACGA
GGACAACTATTTATTTTTTTTCGTCGAATTATTTTCCCCAGAAAGGGAGC
AAAATATGGCCTTTTGGGGGGCGACTGTTTGTTTTTGCAGCCGTTGGCCC
ATGCAGGGTAATGAGCTTAGATTTTAAAAAAAAGTTTCGACTAAAAAAAC
GTCAAAGATTTCGAAAAAATCATCGCCGAGGGCATCGGACACGGGCAAGG
GCTCGTATAAACATAACGCCCCAGACTTATGGGGCAGAGTGTTATACGCC
GGGGCTCCCCTATTTCCGAGGTTTCGTGTGCCTTCCGTGGGCTGCTCGAT
CGCCGCGGGCGAGGCTCGGAAGGGTGCAGCATCGTACTGATCAGGGTCGT
GAACTTATCTGCTTGAGAGACTCATGTTATGTCGTGTTGTGTGTGTATGT
CAGCGGGGGGATTACTCCCATAGGGAAAGTATTCCTACTGTAGTAGGAAT
ATT back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig964:21867..30869+ >mRNA_A-nodosum_M_contig964.4.1 ID=mRNA_A-nodosum_M_contig964.4.1|Name=mRNA_A-nodosum_M_contig964.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig964:21867..30869+ (Ascophyllum nodosum dioecious)
ATGATCTACAACCTGTACATCTTTAATAGGAAGGGCAAGTGCCTCTACTA
TCGTGAATGGAACCGCCCCCAGAACACGCTGGAGAACGCCGCCGACGAAG
GCGAGGAGCAGCGGCTCATGTTTGGCATGCTCTACTCTCTCAAGGAACTG
GTGACCAAGATGTCCAAGGACCCTGCCGCGACAGGACTGCACGCCCTCAA
GACGGGCTCTTACACGCTCCACCACCTGGAAACGGCCAGCGGGCTCCGCT
TCGTCCTCAACACGGACAACAACGCGGGCGACCTGCGGCCGACCCTTCGG
CACCTCTACTCGGGGATCTTCGTGGAGTACGTGGCCAAGCACCCGCAGTT
CAATCCGGTCGACGGGTCTCCTATCCGGCTGAGGGCGTTCGACGCTCGGT
TAGAAGAATACCTCAGGAGCTTGGCGTGCTTCAATTCGTGA back to top
|