mRNA_A-nodosum_M_contig964.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig964.10.1
Unique NamemRNA_A-nodosum_M_contig964.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig964.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig964contigA-nodosum_M_contig964:43173..44863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1693
Hectar predicted targeting categoryother localisation
Exons1
Cds size1554
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.7245994-CDS-A-nodosum_M_contig964:43172..447261680870480.7245994-CDS-A-nodosum_M_contig964:43172..44726Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig964 43173..44726 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.73526-UTR-A-nodosum_M_contig964:44726..448631680870480.73526-UTR-A-nodosum_M_contig964:44726..44863Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig964 44727..44863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig964.10.1prot_A-nodosum_M_contig964.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig964 43173..44726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig964.10.1

>prot_A-nodosum_M_contig964.10.1 ID=prot_A-nodosum_M_contig964.10.1|Name=mRNA_A-nodosum_M_contig964.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=518bp
MSLPAESGTFLSFQYTADSTTLAAAAIANNSPERESPGGAETTCGFQYTV
PSPSPTGPSCSFRPSPINGAGADISPVHLSSVAAVAGRRLDYVERGDGYG
AKPPTALTAAAAAAAALPSGSRLPSMEVHEGIEGDSRTTDLMGSSAVERR
GQGARVLATAAAPASSTTATAIDQTETLAVDTLSAPRRPSLVRATDVARP
SRQLFATLLDNIGLSQMTPSQPTREEDGAFAMGPGECGGCEAVVGSAVTA
LESARRHTTNEDAGVCGGDLEHDRKGRQQADAGEQCQRRRRPGSRCTAVG
GAASTMYYAKSQGSGCPTSAAVGAAAEVARATAQLNEDEGAAAGDVGLDL
PKGLWSMSAIRAAGKLALESQDAASSARPPFHALPPPSREAHDASAVTTA
MTTSEPDACRRPSPQVPILQVSSTKIRCGGFAGATIDSAVSVTSEADGVV
LADKARRNAGASLHPSRGSGRGAAGGVATDNVDAPMAPSGVRFVETRAPG
AEARRAGGGGGEGGSKHR
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mRNA from alignment at A-nodosum_M_contig964:43173..44863-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig964.10.1 ID=mRNA_A-nodosum_M_contig964.10.1|Name=mRNA_A-nodosum_M_contig964.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1691bp|location=Sequence derived from alignment at A-nodosum_M_contig964:43173..44863- (Ascophyllum nodosum dioecious)
CGATGGCGGGCTAGATCCCTGCTGTCGACACCATTATGTCGCCACGCGAT
CCACGGTAACATCAGTCTGATATACCTGCAGCATTGAAGCGGAAGTGGGG
TCGCCGTGGCAGCGGTGGCGTGGTTAAGAGGAAGCTCATGAGCCTCCCGG
CCGAGAGCGGGACCTTCTTGAGTTTTCAGTACACAGCCGACTCGACCACC
CTTGCAGCGGCTGCCATCGCCAACAACAGCCCTGAACGCGAAAGCCCTGG
AGGAGCAGAGACCACGTGTGGATTCCAGTATACGGTGCCCTCGCCGTCGC
CGACTGGGCCGTCCTGTTCGTTTCGCCCTAGTCCTATCAATGGCGCGGGA
GCAGACATCAGCCCGGTTCATTTGTCTTCGGTCGCTGCTGTGGCAGGGCG
AAGGTTGGATTACGTCGAACGAGGAGATGGATATGGGGCAAAACCACCAA
CAGCACTAACCGCAGCAGCAGCAGCAGCAGCAGCTTTACCATCAGGTTCG
CGTTTACCATCGATGGAGGTGCACGAAGGCATCGAAGGAGACAGCAGAAC
TACTGATCTCATGGGAAGCTCAGCTGTGGAACGACGAGGACAAGGGGCAC
GAGTGTTGGCAACGGCGGCGGCGCCAGCATCTTCAACAACAGCAACAGCG
ATAGACCAAACGGAAACGCTTGCGGTGGATACACTCTCGGCTCCACGGCG
CCCAAGCCTCGTACGAGCAACCGACGTTGCTCGACCATCACGCCAACTGT
TCGCGACGTTGCTGGACAACATTGGCCTGTCCCAGATGACGCCGTCGCAA
CCGACCCGAGAAGAGGATGGCGCATTCGCTATGGGCCCGGGGGAGTGCGG
AGGCTGTGAAGCGGTGGTGGGATCAGCGGTGACGGCGCTGGAGTCGGCAA
GGAGACATACCACGAACGAAGATGCTGGGGTTTGCGGTGGAGATCTTGAG
CACGACCGGAAGGGCCGACAGCAGGCTGATGCTGGTGAACAATGCCAGAG
ACGTAGACGGCCGGGCTCACGCTGCACCGCTGTGGGCGGTGCAGCATCAA
CCATGTATTACGCGAAGTCACAGGGCTCAGGCTGCCCAACCTCGGCGGCG
GTGGGAGCAGCGGCCGAGGTAGCGAGGGCAACCGCTCAGTTAAATGAAGA
CGAGGGCGCTGCGGCTGGCGATGTTGGCCTTGACCTCCCGAAAGGGTTGT
GGAGTATGTCGGCGATCAGAGCCGCAGGGAAGCTCGCGTTGGAATCACAG
GACGCTGCAAGCAGCGCTCGGCCTCCTTTTCACGCTTTGCCGCCGCCCAG
CCGAGAGGCACACGATGCTTCAGCGGTGACAACGGCGATGACCACCTCCG
AGCCCGACGCCTGTCGTCGCCCGTCTCCACAGGTACCAATACTACAAGTT
TCTTCGACAAAAATAAGGTGCGGTGGCTTCGCGGGTGCGACGATCGACTC
CGCGGTGTCGGTTACCAGCGAAGCAGACGGAGTGGTGCTGGCGGACAAGG
CAAGAAGAAATGCAGGCGCGTCGCTTCATCCCAGCAGGGGATCGGGACGC
GGAGCGGCGGGGGGAGTGGCGACCGACAACGTAGACGCGCCAATGGCGCC
TTCCGGAGTGAGGTTTGTAGAGACCCGGGCGCCTGGCGCCGAAGCGAGGC
GAGCGGGTGGGGGTGGGGGCGAGGGTGGATCCAAGCATCGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig964:43173..44863-

>mRNA_A-nodosum_M_contig964.10.1 ID=mRNA_A-nodosum_M_contig964.10.1|Name=mRNA_A-nodosum_M_contig964.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at A-nodosum_M_contig964:43173..44863- (Ascophyllum nodosum dioecious)
ATGAGCCTCCCGGCCGAGAGCGGGACCTTCTTGAGTTTTCAGTACACAGC
CGACTCGACCACCCTTGCAGCGGCTGCCATCGCCAACAACAGCCCTGAAC
GCGAAAGCCCTGGAGGAGCAGAGACCACGTGTGGATTCCAGTATACGGTG
CCCTCGCCGTCGCCGACTGGGCCGTCCTGTTCGTTTCGCCCTAGTCCTAT
CAATGGCGCGGGAGCAGACATCAGCCCGGTTCATTTGTCTTCGGTCGCTG
CTGTGGCAGGGCGAAGGTTGGATTACGTCGAACGAGGAGATGGATATGGG
GCAAAACCACCAACAGCACTAACCGCAGCAGCAGCAGCAGCAGCAGCTTT
ACCATCAGGTTCGCGTTTACCATCGATGGAGGTGCACGAAGGCATCGAAG
GAGACAGCAGAACTACTGATCTCATGGGAAGCTCAGCTGTGGAACGACGA
GGACAAGGGGCACGAGTGTTGGCAACGGCGGCGGCGCCAGCATCTTCAAC
AACAGCAACAGCGATAGACCAAACGGAAACGCTTGCGGTGGATACACTCT
CGGCTCCACGGCGCCCAAGCCTCGTACGAGCAACCGACGTTGCTCGACCA
TCACGCCAACTGTTCGCGACGTTGCTGGACAACATTGGCCTGTCCCAGAT
GACGCCGTCGCAACCGACCCGAGAAGAGGATGGCGCATTCGCTATGGGCC
CGGGGGAGTGCGGAGGCTGTGAAGCGGTGGTGGGATCAGCGGTGACGGCG
CTGGAGTCGGCAAGGAGACATACCACGAACGAAGATGCTGGGGTTTGCGG
TGGAGATCTTGAGCACGACCGGAAGGGCCGACAGCAGGCTGATGCTGGTG
AACAATGCCAGAGACGTAGACGGCCGGGCTCACGCTGCACCGCTGTGGGC
GGTGCAGCATCAACCATGTATTACGCGAAGTCACAGGGCTCAGGCTGCCC
AACCTCGGCGGCGGTGGGAGCAGCGGCCGAGGTAGCGAGGGCAACCGCTC
AGTTAAATGAAGACGAGGGCGCTGCGGCTGGCGATGTTGGCCTTGACCTC
CCGAAAGGGTTGTGGAGTATGTCGGCGATCAGAGCCGCAGGGAAGCTCGC
GTTGGAATCACAGGACGCTGCAAGCAGCGCTCGGCCTCCTTTTCACGCTT
TGCCGCCGCCCAGCCGAGAGGCACACGATGCTTCAGCGGTGACAACGGCG
ATGACCACCTCCGAGCCCGACGCCTGTCGTCGCCCGTCTCCACAGGTACC
AATACTACAAGTTTCTTCGACAAAAATAAGGTGCGGTGGCTTCGCGGGTG
CGACGATCGACTCCGCGGTGTCGGTTACCAGCGAAGCAGACGGAGTGGTG
CTGGCGGACAAGGCAAGAAGAAATGCAGGCGCGTCGCTTCATCCCAGCAG
GGGATCGGGACGCGGAGCGGCGGGGGGAGTGGCGACCGACAACGTAGACG
CGCCAATGGCGCCTTCCGGAGTGAGGTTTGTAGAGACCCGGGCGCCTGGC
GCCGAAGCGAGGCGAGCGGGTGGGGGTGGGGGCGAGGGTGGATCCAAGCA
TCGT
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