mRNA_A-nodosum_M_contig9638.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9638.5.1
Unique NamemRNA_A-nodosum_M_contig9638.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: D8LF45_ECTSI (Beta-xylosidase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF45_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.160e-16
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    3 IGCYTDNSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILG-SATCTRTCLGDKSQICGGVFDMSVY 254
            +GCYTD +DR+FSG  +   A+ + E C   C+G A++G QY ++C+CG + +D T  G S  C   C GD+  ICGGV+ M+VY
Sbjct:    4 LGCYTDRNDRVFSGP-MTSSADNSPETCKAACEGYAFYGLQYGKQCFCGASDEDFTRHGESQECLLRCTGDRKSICGGVWAMNVY 87          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 8.940e-16
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    3 IGCYTDNS-DRIFSGNFLLEF-AEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSAT-CTRTCLGDKSQICGGVFDMSVYEYE 263
            +GC+ D+S DR+ SG+ +L   + MT  +CA FC+GS YFGT+Y  EC+C  + D P  LG A+ C  TC GD S+ CGG   + VY  E
Sbjct:  290 VGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVYMLE 379          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.620e-15
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 3
Query:    3 IGCYTDNSD-RIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
            +GCY+D +D R+F     +  A MT E C+  C GSAY+GTQY  ECWCG    D    G+  C   C GD  +ICGG + MSVYE
Sbjct:  166 LGCYSDPADSRVFVQG--VSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 249          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.300e-15
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 3
Query:    3 IGCYTDNSD-RIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
            +GCY+D +D R+F     +  A MT E C+  C GSAY+GTQY  ECWCG    D    G+  C   C GD  +ICGG + MSVYE
Sbjct:  336 LGCYSDPADSRVFVQG--VSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 419          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: D7G4N8_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-13
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   69 MTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
            MT E CA  C GSAY+GTQY +ECWCG+  D     G + C   C G+  ++CGG + MSVY+
Sbjct:    1 MTAELCATLCTGSAYYGTQYSQECWCGDNVDYDAN-GFSVCDMPCSGNSDEMCGGAYTMSVYQ 62          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: UPI000444A20B (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A20B)

HSP 1 Score: 79.7 bits (195), Expect = 2.160e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 3
Query:    3 IGCYTDNSDRIFSGNFLLEFAEMTTEFCAGFCQ--GSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
            +GCYTD   R+ S N +   + +TTE C   C   G +Y GT+Y  ECWCG++       GS  CT TC G+ ++ICGG + +SVY+
Sbjct:  845 VGCYTDGDSRVLSTNLISGSSSLTTETCMATCASAGYSYGGTEYGDECWCGKSISSTASSGSG-CTMTCNGNANEICGGNWQISVYQ 930          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.100e-13
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query:    6 GCYTD-NSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVY 254
            GCY+D  ++R+F  +   +  EMT E CA  C  SA++GTQY RECWCG+     ++ G   C   C G+  + CGG + M VY
Sbjct:  112 GCYSDPGTNRVFVQDDSSD--EMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVY 193          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.760e-13
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 3
Query:    6 GCYTDNSD-RIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYEYEYPSLQ*LRDWPSVFLLY 314
            GCY+D +D RIF      +   MT E+CA  C  SA++GTQY  +CWCG+     +  G   C   C GD  + CGG + MSVY ++   L   +D  S  + Y
Sbjct:  337 GCYSDPADSRIFVEAGSSD--AMTAEYCATLCPDSAFYGTQYSTQCWCGDLNARYSENGEGVCDMPCSGDSDETCGGFYSMSVYAHDPAYLGCFQDSASRIMYY 438          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.850e-13
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query:    6 GCYTD-NSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVY 254
            GCY+D  ++R+F  +   +  EMT E CA  C  SA++GTQY RECWCG+     ++ G   C   C G+  + CGG + M VY
Sbjct:   93 GCYSDPGTNRVFVQDDSSD--EMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVY 174          
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.870e-13
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 3
Query:    3 IGCYTDNSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILG-SATCTRTCLGDKSQICGGVFDMSV 251
            +GCY D   RIFS   ++  ++ + E C   C G AY+G QYR+EC+CG A +D T+ G S  C  +C GD+S  CGG + M V
Sbjct:   49 LGCYADTWSRIFSAPRIVS-SDNSVETCKAACVGYAYYGLQYRKECFCGTADEDYTVYGESDNCVLSCTGDESSTCGGFWAMDV 131          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF45_ECTSI3.160e-1644.71Beta-xylosidase, putative n=1 Tax=Ectocarpus silic... [more]
D8LC73_ECTSI8.940e-1646.67Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KQV8_9PHAE1.620e-1547.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K646_9PHAE4.300e-1547.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4N8_ECTSI1.430e-1349.21WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI000444A20B2.160e-1342.53hypothetical protein n=1 Tax=Stereum hirsutum (str... [more]
A0A6H5KL84_9PHAE4.100e-1341.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K060_9PHAE5.760e-1338.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS7_9PHAE7.850e-1341.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPQ4_9PHAE9.870e-1344.05WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9638contigA-nodosum_M_contig9638:9530..10926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC73
PFAMsWSC
Model size729
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.31e-15
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size213
COG categoryU
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.5638745-UTR-A-nodosum_M_contig9638:9529..95971680870480.5638745-UTR-A-nodosum_M_contig9638:9529..9597Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9638 9530..9597 +
1680870480.6164749-UTR-A-nodosum_M_contig9638:10478..109261680870480.6164749-UTR-A-nodosum_M_contig9638:10478..10926Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9638 10479..10926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870480.5765138-CDS-A-nodosum_M_contig9638:9597..96091680870480.5765138-CDS-A-nodosum_M_contig9638:9597..9609Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 9598..9609 +
1680870480.5909028-CDS-A-nodosum_M_contig9638:9959..100161680870480.5909028-CDS-A-nodosum_M_contig9638:9959..10016Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 9960..10016 +
1680870480.6061432-CDS-A-nodosum_M_contig9638:10334..104781680870480.6061432-CDS-A-nodosum_M_contig9638:10334..10478Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9638 10335..10478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9638.5.1prot_A-nodosum_M_contig9638.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9638 9598..10478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9638.5.1

>prot_A-nodosum_M_contig9638.5.1 ID=prot_A-nodosum_M_contig9638.5.1|Name=mRNA_A-nodosum_M_contig9638.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKS
QICGGVFDMSVYEYEYPSLQ*
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mRNA from alignment at A-nodosum_M_contig9638:9530..10926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9638.5.1 ID=mRNA_A-nodosum_M_contig9638.5.1|Name=mRNA_A-nodosum_M_contig9638.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1397bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:9530..10926+ (Ascophyllum nodosum dioecious)
ATATTGGGTGCTACACTGATAACTCCGATCGTATTTTTTCAGGGAATTTC TTGCTAGAGTTTGCCGAGATGACCACGGAGGTGAGCCGTGAGTGGGTTTG GGAGTTAAATATATTGTTTCTATTTCACAGTTTGAGCGACGCATGAACCA TATACGGACTTCTTCGGTTCTGGTAATGAGTAGTGATAAACTGGTGTCGT CGAAAGCCCGTTAACTGTAAAGGGCCTTGTCCAATTGTTCCCCCTACAGT ATTTCAGACATGTACTCATCGATCAATGATGACGAGTCGACCTGGGTCAC ACTCCCTCCAGAAATGAGAACTTACCATCAGCCGTCGTATTTTTACTATG ACCATGCGGAAACCAACGTGCTCACATGCTCCTCTTCGCCTGAATCTCCT GGGTCTTCTACCGTTTGGCGGTGTACTCAGTTTTGCGCCGGATTTTGCCA GGGATCGGCTTACTTCGGCACTCAGTACAGGCGCGAGGTGAGTCAGCATG GTCCCGAAAGTCTCCTTAGTAGTCCAAACCAGTTTATAGTTTTGCGCTAC GTACCTTCTCAAGGCCTACGTGACGGCTTCAAAAATCATGTACCACCCAA AGATATATACCAAACCTAGAAGAGGTGGAGCAAGGGAAAGGCTTGAAGTA GACACCAGGTGGCTTAGCTCTCAAAACCACCCACCAAATGTTGTACTAAC TCTTTGCAGCACGCGGAGTCATAAATCGATGAAAATTTCGACACCTTCCT CTCGTACCGATCGCGTCATCGTGTTTCGGCGTTATCGAATCCATTCATCG CGCAGTGTTGGTGTGGAGAAGCAACGGATGATCCTACGATCCTTGGTTCT GCAACCTGTACCAGGACCTGCCTTGGTGATAAATCACAGATTTGCGGAGG CGTCTTTGACATGTCCGTGTACGAGTACGAATACCCATCTCTACAGTGAC TCCGAGACTGGCCATCAGTGTTTCTGTTATATCTTATGACCTTACCCCAG AAACGCAAATAATGGGTTTTGGTGCCAATCGCTCCGTCTCTACCTCTGTG ATGCACTCGAAACCGGCGCATTGATACCAATGCCTTCTCGAAGCGGCTGT ATTGTCAACAATCGGCACGACGAGGTCGCGTGTGACCATTATGGACGGAG GTAATAACAATCCGGAAGAGCCTACAACTACTCTGTCTTGATTTGTAAGT TTACACTTTGGGGTTATTTGTACAGAAAAGACGGCGGGGTGAGCGAGACA GTTTTGGCTAGGCGACAGAACTTCGCTTACGTTTGAGGTGCCCAATCAAT GAAGGACCCGTGCATAACCTTCTCCTGTATGCAGTGTCTCCCAAGACCTA GTAATAATAGCATTTGTTCTCCTAAACCCTTGAATATTGGCTTTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9638:9530..10926+

>mRNA_A-nodosum_M_contig9638.5.1 ID=mRNA_A-nodosum_M_contig9638.5.1|Name=mRNA_A-nodosum_M_contig9638.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:9530..10926+ (Ascophyllum nodosum dioecious)
ATGACCACGGAGTTTTGCGCCGGATTTTGCCAGGGATCGGCTTACTTCGG
CACTCAGTACAGGCGCGAGTGTTGGTGTGGAGAAGCAACGGATGATCCTA
CGATCCTTGGTTCTGCAACCTGTACCAGGACCTGCCTTGGTGATAAATCA
CAGATTTGCGGAGGCGTCTTTGACATGTCCGTGTACGAGTACGAATACCC
ATCTCTACAGTGA
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