mRNA_A-nodosum_M_contig9638.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: D8LF45_ECTSI (Beta-xylosidase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF45_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 3.160e-16 Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 3
Query: 3 IGCYTDNSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILG-SATCTRTCLGDKSQICGGVFDMSVY 254
+GCYTD +DR+FSG + A+ + E C C+G A++G QY ++C+CG + +D T G S C C GD+ ICGGV+ M+VY
Sbjct: 4 LGCYTDRNDRVFSGP-MTSSADNSPETCKAACEGYAFYGLQYGKQCFCGASDEDFTRHGESQECLLRCTGDRKSICGGVWAMNVY 87
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 8.940e-16 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 3
Query: 3 IGCYTDNS-DRIFSGNFLLEF-AEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSAT-CTRTCLGDKSQICGGVFDMSVYEYE 263
+GC+ D+S DR+ SG+ +L + MT +CA FC+GS YFGT+Y EC+C + D P LG A+ C TC GD S+ CGG + VY E
Sbjct: 290 VGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVYMLE 379
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5KQV8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.620e-15 Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 3
Query: 3 IGCYTDNSD-RIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
+GCY+D +D R+F + A MT E C+ C GSAY+GTQY ECWCG D G+ C C GD +ICGG + MSVYE
Sbjct: 166 LGCYSDPADSRVFVQG--VSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 249
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 4.300e-15 Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 3
Query: 3 IGCYTDNSD-RIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
+GCY+D +D R+F + A MT E C+ C GSAY+GTQY ECWCG D G+ C C GD +ICGG + MSVYE
Sbjct: 336 LGCYSDPADSRVFVQG--VSSAAMTAEICSAACAGSAYYGTQYSVECWCGAEGADYDANGAGVCDMPCGGDADEICGGFYAMSVYE 419
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: D7G4N8_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N8_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.430e-13 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 3
Query: 69 MTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
MT E CA C GSAY+GTQY +ECWCG+ D G + C C G+ ++CGG + MSVY+
Sbjct: 1 MTAELCATLCTGSAYYGTQYSQECWCGDNVDYDAN-GFSVCDMPCSGNSDEMCGGAYTMSVYQ 62
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: UPI000444A20B (hypothetical protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A20B) HSP 1 Score: 79.7 bits (195), Expect = 2.160e-13 Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 3
Query: 3 IGCYTDNSDRIFSGNFLLEFAEMTTEFCAGFCQ--GSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYE 257
+GCYTD R+ S N + + +TTE C C G +Y GT+Y ECWCG++ GS CT TC G+ ++ICGG + +SVY+
Sbjct: 845 VGCYTDGDSRVLSTNLISGSSSLTTETCMATCASAGYSYGGTEYGDECWCGKSISSTASSGSG-CTMTCNGNANEICGGNWQISVYQ 930
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 4.100e-13 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query: 6 GCYTD-NSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVY 254
GCY+D ++R+F + + EMT E CA C SA++GTQY RECWCG+ ++ G C C G+ + CGG + M VY
Sbjct: 112 GCYSDPGTNRVFVQDDSSD--EMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVY 193
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 5.760e-13 Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 3
Query: 6 GCYTDNSD-RIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVYEYEYPSLQ*LRDWPSVFLLY 314
GCY+D +D RIF + MT E+CA C SA++GTQY +CWCG+ + G C C GD + CGG + MSVY ++ L +D S + Y
Sbjct: 337 GCYSDPADSRIFVEAGSSD--AMTAEYCATLCPDSAFYGTQYSTQCWCGDLNARYSENGEGVCDMPCSGDSDETCGGFYSMSVYAHDPAYLGCFQDSASRIMYY 438
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 7.850e-13 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query: 6 GCYTD-NSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSQICGGVFDMSVY 254
GCY+D ++R+F + + EMT E CA C SA++GTQY RECWCG+ ++ G C C G+ + CGG + M VY
Sbjct: 93 GCYSDPGTNRVFVQDDSSD--EMTAEVCAAQCDESAFYGTQYSRECWCGDINAQYSVNGVGVCDMPCSGNSEESCGGSYSMDVY 174
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 9.870e-13 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 3
Query: 3 IGCYTDNSDRIFSGNFLLEFAEMTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILG-SATCTRTCLGDKSQICGGVFDMSV 251
+GCY D RIFS ++ ++ + E C C G AY+G QYR+EC+CG A +D T+ G S C +C GD+S CGG + M V
Sbjct: 49 LGCYADTWSRIFSAPRIVS-SDNSVETCKAACVGYAYYGLQYRKECFCGTADEDYTVYGESDNCVLSCTGDESSTCGGFWAMDV 131 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9638.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9638.5.1 >prot_A-nodosum_M_contig9638.5.1 ID=prot_A-nodosum_M_contig9638.5.1|Name=mRNA_A-nodosum_M_contig9638.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp MTTEFCAGFCQGSAYFGTQYRRECWCGEATDDPTILGSATCTRTCLGDKSback to top mRNA from alignment at A-nodosum_M_contig9638:9530..10926+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9638.5.1 ID=mRNA_A-nodosum_M_contig9638.5.1|Name=mRNA_A-nodosum_M_contig9638.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1397bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:9530..10926+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9638:9530..10926+ >mRNA_A-nodosum_M_contig9638.5.1 ID=mRNA_A-nodosum_M_contig9638.5.1|Name=mRNA_A-nodosum_M_contig9638.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig9638:9530..10926+ (Ascophyllum nodosum dioecious)back to top |